Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000441.1

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Forward (+)

78300 .. 83751

Gene Structure 5452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000441.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

atggtaactgtctgtctaacatgtggtgatagaggcttcgaaaaggttacggtaaactgttcaaagtgtcaagatagtccacaacatatttattgccttgacgtgacaccagaaaaatattttgagaaagattttacttgggtttgtgacgagtgtaaaccagtctctatcccttcgaaaagtcatcataacgaaaactctgagaagaagaagaggaagaagttgaaaaagaagagtaatagaaagaaattcactgggtctgtggctaaaacgaaggttcagatatgtgaaggtagccctcctgaacacgaggctaagggcagtgaaaattgtgataatgttctaaagattggtaatcggtcgggacaggttcttgaagatcaggtcaattcctcccatgatctggccgcatctttaaagacccctcaaatagcggctagtgaccctttgaaaatcaatgaagactgttatgttgctgcacagcctattattgatccaacttggaggggaagtctaagcataatgaacaaagacttcagcatcattagtggacttgtagctcatctttcaagcttggcatgtgctaaagtgtttgaagaggcgaaattgctaccaatgctgctgtttccagatttggtttgtagggttgatgtgtggccaaaggcgtttgagagctgcggaccaagtgatcagagtattgctctttatttttttcctgacagcaaaagtaatgagaaggattttgataacctagtggttagcatgatccaagaggatcttgctatgagggcagtgctggataatgctgagcttttagttttcacttcaagtgtactgcccaagcagtttcagagattccagacaaagctttatttgtggggtgcatttagggggaagcagtcttcccccttaacaaatgataatgaccccagaggtgagaaagacctcacaaagcccttaccttgttgtacacagagtccgaaaaagaagagagggagagagtcttcgagtgcgacctctcccaaccgaacgctgctggctccctgccgctgcgttccggtccaggagaggaagttttttcgggctagcggcatggatctctggcggaggcttggttcacgaatggtggaaggtggtttgacgccggacagggcaaatcgggtgagatctcctcctcttgggtcatgggtgagatttgacaaggaacagcgaaggggtgcttgccggcggcaattcctggcttcacggatggttcaaggtacatcaactaggtttgggggtggccggctttgtggtgaggcagtgcggtggcgtaggaatgcgttgctgcaacgtggcggtgcaaggcggcggtgtggtgacgtggagagagagctgacagcaagtttggaggagggaggcgctggctccttgcgggaagtggaggttgggccgggccgctgtgtttggtcaattttttattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

54.51

Weight (kDa)

9.24

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AclWI	GGATC	4 cut(s)	488, 760, 783, 1104
AcoI	YGGCCR	3 cut(s)	405, 656, 1282
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	1142
AfaI	GTAC	3 cut(s)	834, 970, 1261
AfiI	CCNNNNNNNGG	2 cut(s)	403, 1178
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	8 cut(s)	63, 226, 377, 451, 570, 596, 828, 1256
AjiI	CACGTC	2 cut(s)	103, 1363
AjnI	CCWGG	2 cut(s)	1062, 1236
AjuI	GAANNNNNNNTTGG	2 cut(s)	1410, 1442
AloI	GAACNNNNNNTCC	2 cut(s)	1099, 1131
AluBI	AGCT	6 cut(s)	560, 573, 675, 811, 868, 1375
AluI	AGCT	6 cut(s)	560, 573, 675, 811, 868, 1375
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	4 cut(s)	488, 760, 783, 1104
AoxI	GGCC	5 cut(s)	405, 656, 1282, 1430, 1435
ApeKI	GCWGC	6 cut(s)	476, 619, 675, 1033, 1050, 1327
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	1369, 1401
AspLEI	GCGC	1 cut(s)	1403
AspS9I	GGNCC	4 cut(s)	680, 1060, 1430, 1435
AsuC2I	CCSGG	1 cut(s)	1434
AsuHPI	GGTGA	6 cut(s)	38, 947, 1174, 1201, 1307, 1370
AsuII	TTCGAA	2 cut(s)	39, 176
AsuNHI	GCTAGC	1 cut(s)	1085
AvaII	GGWCC	2 cut(s)	680, 1060
BalI	TGGCCA	1 cut(s)	658
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	3 cut(s)	468, 894, 996
BbvI	GCAGC	6 cut(s)	463, 606, 662, 1020, 1037, 1314
BccI	CCATC	1 cut(s)	1243
BciT130I	CCWGG	2 cut(s)	1064, 1238
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	1434
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	4 cut(s)	438, 752, 1086, 1269
BfoI	RGCGCY	1 cut(s)	1404
BglII	AGATCT	1 cut(s)	1166
BlpI	GCTNAGC	1 cut(s)	807
Bme1390I	CCNGG	3 cut(s)	1064, 1238, 1434
Bme18I	GGWCC	2 cut(s)	680, 1060
BmgBI	CACGTC	2 cut(s)	103, 1363
BmgT120I	GGNCC	4 cut(s)	680, 1060, 1430, 1435
BmiI	GGNNCC	2 cut(s)	1041, 1408
BmrFI	CCNGG	3 cut(s)	1064, 1238, 1434
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	419, 549
BmtI	GCTAGC	1 cut(s)	1089
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	3 cut(s)	468, 894, 996
BplI	GAGNNNNNCTC	4 cut(s)	685, 717, 1156, 1188
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	2 cut(s)	39, 176
BpuMI	CCSGG	1 cut(s)	1434
BsaHI	GRCGYC	1 cut(s)	1142
BsaWI	WCCGGW	1 cut(s)	1057
BsaXI	ACNNNNNCTCC	6 cut(s)	496, 526, 1058, 1088, 1099, 1129
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 1178
Bse118I	RCCGGY	2 cut(s)	1224, 1284
Bse1I	ACTGG	2 cut(s)	161, 259
BseBI	CCWGG	2 cut(s)	1064, 1238
BseGI	GGATG	1 cut(s)	1254
BseLI	CCNNNNNNNGG	2 cut(s)	403, 1178
BseMII	CTCAG	2 cut(s)	192, 798
BseNI	ACTGG	2 cut(s)	161, 259
BseRI	GAGGAG	3 cut(s)	1161, 1164, 1406
BseXI	GCAGC	6 cut(s)	463, 606, 662, 1020, 1037, 1314
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	407, 658, 1284, 1432, 1437
BsiEI	CGRYCG	1 cut(s)	362
BsiSI	CCGG	5 cut(s)	1058, 1145, 1225, 1285, 1433
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	403, 1178
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	1324
BsnI	GGCC	5 cut(s)	407, 658, 1284, 1432, 1437
Bsp119I	TTCGAA	2 cut(s)	39, 176
Bsp1407I	TGTACA	1 cut(s)	968
Bsp143I	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
Bsp1720I	GCTNAGC	1 cut(s)	807
BspANI	GGCC	5 cut(s)	407, 658, 1284, 1432, 1437
BspCNI	CTCAG	2 cut(s)	193, 799
BspLI	GGNNCC	2 cut(s)	1041, 1408
BspOI	GCTAGC	1 cut(s)	1089
BspPI	GGATC	4 cut(s)	488, 760, 783, 1104
BspT104I	TTCGAA	2 cut(s)	39, 176
BsrFI	RCCGGY	2 cut(s)	1224, 1284
BsrGI	TGTACA	1 cut(s)	968
BsrI	ACTGG	2 cut(s)	161, 259
BssAI	RCCGGY	2 cut(s)	1224, 1284
BssMI	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
BssNI	GRCGYC	1 cut(s)	1142
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	1064, 1238
Bst4CI	ACNGT	4 cut(s)	10, 52, 59, 467
Bst6I	CTCTTC	4 cut(s)	206, 227, 591, 983
BstACI	GRCGYC	1 cut(s)	1142
BstAUI	TGTACA	1 cut(s)	968
BstBI	TTCGAA	2 cut(s)	39, 176
BstC8I	GCNNGC	6 cut(s)	1038, 1087, 1222, 1226, 1286, 1405
BstDEI	CTNAG	4 cut(s)	201, 315, 515, 807
BstF5I	GGATG	1 cut(s)	1254
BstH2I	RGCGCY	1 cut(s)	1404
BstHHI	GCGC	1 cut(s)	1403
BstKTI	GATC	8 cut(s)	382, 403, 496, 691, 768, 778, 1099, 1169
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 788
BstNI	CCWGG	2 cut(s)	1064, 1238
BstNSI	RCATGY	2 cut(s)	24, 582
BstSCI	CCNGG	3 cut(s)	1062, 1236, 1432
BstV1I	GCAGC	6 cut(s)	463, 606, 662, 1020, 1037, 1314
BstV2I	GAAGAC	3 cut(s)	468, 894, 996
BstX2I	RGATCY	3 cut(s)	775, 1096, 1166
BstYI	RGATCY	3 cut(s)	775, 1096, 1166
BsuRI	GGCC	5 cut(s)	407, 658, 1284, 1432, 1437
BtrI	CACGTC	2 cut(s)	103, 1363
BtsCI	GGATG	1 cut(s)	1254
BtsI	GCAGTG	3 cut(s)	328, 798, 1308
BtsIMutI	CAGTG	4 cut(s)	252, 328, 798, 1308
Cac8I	GCNNGC	6 cut(s)	1038, 1087, 1222, 1226, 1286, 1405
CfoI	GCGC	1 cut(s)	1403
Cfr10I	RCCGGY	2 cut(s)	1224, 1284
Cfr13I	GGNCC	4 cut(s)	680, 1060, 1430, 1435
CseI	GACGC	1 cut(s)	1150
Csp6I	GTAC	3 cut(s)	833, 969, 1260
CviAII	CATG	6 cut(s)	21, 398, 579, 763, 1093, 1185
CviQI	GTAC	3 cut(s)	833, 969, 1260
DdeI	CTNAG	4 cut(s)	201, 315, 515, 807
DpnI	GATC	8 cut(s)	381, 402, 495, 690, 767, 777, 1098, 1168
DpnII	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
DraI	TTTAAA	1 cut(s)	417
EaeI	YGGCCR	3 cut(s)	405, 656, 1282
Eam1104I	CTCTTC	4 cut(s)	206, 227, 591, 983
EarI	CTCTTC	4 cut(s)	206, 227, 591, 983
EciI	GGCGGA	1 cut(s)	1120
Eco47I	GGWCC	2 cut(s)	680, 1060
Eco57I	CTGAAG	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	1062, 1236
FaeI	CATG	6 cut(s)	24, 401, 582, 766, 1096, 1188
FalI	AAGNNNNNCTT	4 cut(s)	762, 794, 1204, 1236
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	6 cut(s)	20, 397, 578, 762, 1092, 1184
FauI	CCCGC	1 cut(s)	1407
FbaI	TGATCA	1 cut(s)	688
FokI	GGATG	1 cut(s)	1261
FspBI	CTAG	4 cut(s)	438, 752, 1086, 1269
GlaI	GCGC	1 cut(s)	1402
HaeII	RGCGCY	1 cut(s)	1404
HaeIII	GGCC	5 cut(s)	407, 658, 1284, 1432, 1437
HapII	CCGG	5 cut(s)	1058, 1145, 1225, 1285, 1433
HgaI	GACGC	1 cut(s)	1150
HhaI	GCGC	1 cut(s)	1403
Hin1I	GRCGYC	1 cut(s)	1142
Hin1II	CATG	6 cut(s)	24, 401, 582, 766, 1096, 1188
Hin6I	GCGC	1 cut(s)	1401
HinP1I	GCGC	1 cut(s)	1401
HindIII	AAGCTT	2 cut(s)	571, 866
HinfI	GANTC	3 cut(s)	855, 976, 1001
HpaII	CCGG	5 cut(s)	1058, 1145, 1225, 1285, 1433
HphI	GGTGA	6 cut(s)	38, 947, 1174, 1201, 1307, 1370
Hpy166II	GTNNAC	7 cut(s)	55, 80, 158, 551, 833, 971, 1118
Hpy188I	TCNGA	5 cut(s)	202, 282, 693, 852, 981
Hpy188III	TCNNGA	8 cut(s)	71, 302, 363, 374, 629, 716, 859, 1119
Hpy8I	GTNNAC	7 cut(s)	55, 80, 158, 551, 833, 971, 1118
HpyAV	CCTTC	6 cut(s)	183, 268, 284, 730, 1124, 1206
HpyCH4III	ACNGT	4 cut(s)	10, 52, 59, 467
HpyCH4IV	ACGT	3 cut(s)	102, 1333, 1362
HpyCH4V	TGCA	4 cut(s)	479, 884, 1330, 1343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 788
HpyF3I	CTNAG	4 cut(s)	201, 315, 515, 807
HpySE526I	ACGT	3 cut(s)	102, 1333, 1362
Hsp92I	GRCGYC	1 cut(s)	1142
Hsp92II	CATG	6 cut(s)	24, 401, 582, 766, 1096, 1188
HspAI	GCGC	1 cut(s)	1401
KroI	GCCGGC	2 cut(s)	1224, 1284
KroNI	GCCGGC	2 cut(s)	1226, 1286
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
LmnI	GCTCC	2 cut(s)	1045, 1412
Lsp1109I	GCAGC	6 cut(s)	463, 606, 662, 1020, 1037, 1314
LweI	GCATC	2 cut(s)	419, 549
MaeI	CTAG	4 cut(s)	438, 752, 1086, 1269
MaeII	ACGT	3 cut(s)	102, 1333, 1362
MaeIII	GTNAC	6 cut(s)	4, 46, 103, 146, 440, 1358
MalI	GATC	8 cut(s)	381, 402, 495, 690, 767, 777, 1098, 1168
MboI	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
MflI	RGATCY	3 cut(s)	775, 1096, 1166
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	6 cut(s)	248, 328, 388, 605, 1232, 1452
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	985, 1010
MmeI	TCCRAC	1 cut(s)	521
Mox20I	TGGCCA	1 cut(s)	658
MroNI	GCCGGC	2 cut(s)	1224, 1284
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	2 cut(s)	416, 911
Msp20I	TGGCCA	1 cut(s)	658
MspA1I	CMGCKG	2 cut(s)	1050, 1440
MspI	CCGG	5 cut(s)	1058, 1145, 1225, 1285, 1433
MspR9I	CCNGG	3 cut(s)	1064, 1238, 1434
Mva1269I	GAATGC	1 cut(s)	1324
MvaI	CCWGG	2 cut(s)	1064, 1238
MwoI	GCNNNNNNNGC	2 cut(s)	616, 788
NaeI	GCCGGC	2 cut(s)	1226, 1286
NciI	CCSGG	1 cut(s)	1434
NdeII	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
NgoMIV	GCCGGC	2 cut(s)	1224, 1284
NheI	GCTAGC	1 cut(s)	1085
NlaIII	CATG	6 cut(s)	24, 401, 582, 766, 1096, 1188
NlaIV	GGNNCC	2 cut(s)	1041, 1408
NmuCI	GTSAC	4 cut(s)	103, 146, 440, 1358
NspI	RCATGY	2 cut(s)	24, 582
NspV	TTCGAA	2 cut(s)	39, 176
PciI	ACATGT	1 cut(s)	20
PctI	GAATGC	1 cut(s)	1324
PdiI	GCCGGC	2 cut(s)	1226, 1286
PfeI	GAWTC	1 cut(s)	855
PflMI	CCANNNNNTGG	1 cut(s)	403
PfoI	TCCNGGA	1 cut(s)	1062
PleI	GAGTC	2 cut(s)	984, 1009
PpsI	GAGTC	2 cut(s)	984, 1009
PscI	ACATGT	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	1062, 1236
PspGI	CCWGG	2 cut(s)	1062, 1236
PspN4I	GGNNCC	2 cut(s)	1041, 1408
PspPI	GGNCC	4 cut(s)	680, 1060, 1430, 1435
PsuI	RGATCY	3 cut(s)	775, 1096, 1166
RsaI	GTAC	3 cut(s)	834, 970, 1261
RsaNI	GTAC	3 cut(s)	833, 969, 1260
SaqAI	TTAA	2 cut(s)	416, 911
Sau3AI	GATC	8 cut(s)	379, 400, 493, 688, 765, 775, 1096, 1166
Sau96I	GGNCC	4 cut(s)	680, 1060, 1430, 1435
SchI	GAGTC	2 cut(s)	985, 1010
ScrFI	CCNGG	3 cut(s)	1064, 1238, 1434
SfaNI	GCATC	2 cut(s)	419, 549
SfuI	TTCGAA	2 cut(s)	39, 176
SinI	GGWCC	2 cut(s)	680, 1060
Sse9I	AATT	6 cut(s)	248, 328, 388, 605, 1232, 1452
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	4 cut(s)	438, 752, 1086, 1269
StyD4I	CCNGG	3 cut(s)	1062, 1236, 1432
TaaI	ACNGT	4 cut(s)	10, 52, 59, 467
TaiI	ACGT	3 cut(s)	105, 1336, 1365
TaqI	TCGA	3 cut(s)	39, 176, 1007
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	6 cut(s)	248, 328, 388, 605, 1232, 1452
TatI	WGTACW	2 cut(s)	832, 968
TauI	GCSGC	7 cut(s)	410, 437, 1050, 1092, 1231, 1351, 1440
TfiI	GAWTC	1 cut(s)	855
Tru1I	TTAA	2 cut(s)	416, 911
Tru9I	TTAA	2 cut(s)	416, 911
TscAI	CASTG	4 cut(s)	259, 328, 798, 1308
TseFI	GTSAC	4 cut(s)	103, 146, 440, 1358
TseI	GCWGC	6 cut(s)	476, 619, 675, 1033, 1050, 1327
Tsp45I	GTSAC	4 cut(s)	103, 146, 440, 1358
TspDTI	ATGAA	2 cut(s)	474, 539
TspGWI	ACGGA	1 cut(s)	1261
TspRI	CASTG	4 cut(s)	259, 328, 798, 1308
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	680, 1060
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	2 cut(s)	24, 582
XspI	CTAG	4 cut(s)	438, 752, 1086, 1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.