Rw6G018650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002389
Physical Location & Seq
Reverse (-)
37018789 .. 37022367
3579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018650.1

Sequence Viewer

Length: 1029 bp
ATGGTAACTGTCTGTCTAACATGTGGTGATAGAGGCTTCGAAAAGGTTACGGTAAACTGTTCAAAGTGTCAAGATAGTCGACAACATATTTATTGCCTTGACGTGACACCAGAAAAATATTTTGAGAAAGATTTTACTTGGGTTTGTGACGAGTGTAAACCAGTCTCTATCTCTTCGAAAAGTCATCATAACCAAAACTCTAAGAAGAAGAAGAGGAAGAAGTTGAAAAAGAAGAGTAATAGAAAGAAATTCACTGGGTCTGTGGCTAAAACGAAGGTTCAGATATGTGAAGGTAGCCCTCCTGAACACGAGGCTAAGGGCAGTGAAAATTGTGATAATGTTCTAAAGATTGGTAATCGGTCGGGACAGGTTCTTGAAGATCAGGTCAATTCCTCCCATGATCTGGCCGCATCTTTAAAGACCCCTCAAATAGCGGCTAGTGACCCTTTGAAAATCAATGAAGACTGTTATGTTGCTGCACAGCCTATTATTGATCCAACTTGGAGGGGAAGTCTAAGCATAATGAACAAAGACTTCAGCATCATTAGTGGACTTGTAGCTCATCTTTCAAGCTTAGCATGTGCTAAAGTGTTTGAAGAGGCGAAATTACTACCAATGCTGCTGTTTCCAGATTTGGTTTGTAGGGTTGATGTGTGGCCAAAGGCGTTTGAGAGCTGCGGACCAAGTGATCAGAGTATTGCTCTTTATTTTTTTCCTGACAGCAAAAGTAATGAGAAGGATTTTGATAACCTAGTGGTTAGCATGATCCAAGAGGATCTTGCTATGAGGGCAGTGCTGGATAATGCTGAGCTTTTAGTTTTCACTTCAAGTGTACTGCCCAAGCAGTTTCAGAGATTCCAGACAAAGCTTTATTTGTGGGGTGCATTTAGGGGGAAGCAGTCTTCCCCATTAACAAATGATAATGACCCCAGAGGTGAGAAAGACCTCACAAAGCCCTTACCTAGTTGCACACAGAGTCCAGTTAGTCCGTTGAGCAACAATGTGGACTGTCGTTCTGAATCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

38.16

Weight (kDa)

8.27

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 168 - 296 1.7e-45 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 403
AccI GTMKAC 1 cut(s) 79
AciI CCGC 3 cut(s) 408, 434, 678
AclWI GGATC 3 cut(s) 488, 760, 783
AcoI YGGCCR 2 cut(s) 405, 656
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 520
AfaI GTAC 1 cut(s) 834
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 7 cut(s) 63, 226, 377, 451, 570, 596, 828
AjiI CACGTC 1 cut(s) 103
AluBI AGCT 5 cut(s) 560, 573, 675, 811, 868
AluI AGCT 5 cut(s) 560, 573, 675, 811, 868
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 3 cut(s) 488, 760, 783
AoxI GGCC 2 cut(s) 405, 656
ApeKI GCWGC 3 cut(s) 476, 619, 675
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 38, 947
AsuII TTCGAA 2 cut(s) 39, 176
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 658
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 468, 894
BbvI GCAGC 3 cut(s) 463, 606, 662
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 3 cut(s) 438, 752, 963
BisI GCNGC 5 cut(s) 408, 435, 477, 620, 676
BlpI GCTNAGC 2 cut(s) 574, 807
BlsI GCNGC 5 cut(s) 409, 436, 478, 621, 677
Bme18I GGWCC 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 419, 549
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 2 cut(s) 468, 894
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 2 cut(s) 574, 807
Bpu14I TTCGAA 2 cut(s) 39, 176
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse1I ACTGG 3 cut(s) 161, 259, 980
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 3 cut(s) 161, 259, 980
BseXI GCAGC 3 cut(s) 463, 606, 662
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 407, 658
BsiEI CGRYCG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 2 cut(s) 407, 658
Bsp119I TTCGAA 2 cut(s) 39, 176
Bsp143I GATC 6 cut(s) 379, 400, 493, 688, 765, 775
Bsp1720I GCTNAGC 2 cut(s) 574, 807
BspACI CCGC 3 cut(s) 408, 434, 678
BspANI GGCC 2 cut(s) 407, 658
BspCNI CTCAG 1 cut(s) 799
BspPI GGATC 3 cut(s) 488, 760, 783
BspT104I TTCGAA 2 cut(s) 39, 176
BsrI ACTGG 3 cut(s) 161, 259, 980
BssMI GATC 6 cut(s) 379, 400, 493, 688, 765, 775
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 5 cut(s) 10, 52, 59, 467, 1010
Bst6I CTCTTC 4 cut(s) 178, 206, 227, 591
BstBI TTCGAA 2 cut(s) 39, 176
BstDEI CTNAG 5 cut(s) 201, 315, 515, 574, 807
BstKTI GATC 6 cut(s) 382, 403, 496, 691, 768, 778
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 6 cut(s) 379, 400, 493, 688, 765, 775
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 788
BstNSI RCATGY 2 cut(s) 24, 582
BstV1I GCAGC 3 cut(s) 463, 606, 662
BstV2I GAAGAC 2 cut(s) 468, 894
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BsuRI GGCC 2 cut(s) 407, 658
BtrI CACGTC 1 cut(s) 103
BtsI GCAGTG 2 cut(s) 328, 798
BtsIMutI CAGTG 3 cut(s) 252, 328, 798
Cfr13I GGNCC 1 cut(s) 680
Csp6I GTAC 1 cut(s) 833
CviAII CATG 4 cut(s) 21, 398, 579, 763
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 5 cut(s) 201, 315, 515, 574, 807
DpnI GATC 6 cut(s) 381, 402, 495, 690, 767, 777
DpnII GATC 6 cut(s) 379, 400, 493, 688, 765, 775
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 405, 656
Eam1104I CTCTTC 4 cut(s) 178, 206, 227, 591
EarI CTCTTC 4 cut(s) 178, 206, 227, 591
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 520
FaeI CATG 4 cut(s) 24, 401, 582, 766
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 378
FatI CATG 4 cut(s) 20, 397, 578, 762
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 5 cut(s) 408, 435, 477, 620, 676
Fsp4HI GCNGC 5 cut(s) 408, 435, 477, 620, 676
FspBI CTAG 3 cut(s) 438, 752, 963
GluI GCNGC 5 cut(s) 408, 435, 477, 620, 676
HaeIII GGCC 2 cut(s) 407, 658
Hin1II CATG 4 cut(s) 24, 401, 582, 766
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HindIII AAGCTT 2 cut(s) 571, 866
HinfI GANTC 3 cut(s) 855, 976, 1019
HphI GGTGA 2 cut(s) 38, 947
Hpy166II GTNNAC 6 cut(s) 55, 80, 158, 551, 833, 1006
Hpy188I TCNGA 4 cut(s) 282, 693, 852, 1018
Hpy188III TCNNGA 7 cut(s) 71, 302, 363, 374, 629, 716, 859
Hpy8I GTNNAC 6 cut(s) 55, 80, 158, 551, 833, 1006
HpyAV CCTTC 3 cut(s) 268, 284, 730
HpyCH4III ACNGT 5 cut(s) 10, 52, 59, 467, 1010
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 479, 884, 969
HpyF10VI GCNNNNNNNGC 1 cut(s) 788
HpyF3I CTNAG 5 cut(s) 201, 315, 515, 574, 807
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 4 cut(s) 24, 401, 582, 766
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 6 cut(s) 379, 400, 493, 688, 765, 775
Lsp1109I GCAGC 3 cut(s) 463, 606, 662
LweI GCATC 2 cut(s) 419, 549
MaeI CTAG 3 cut(s) 438, 752, 963
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 5 cut(s) 4, 46, 103, 146, 440
MalI GATC 6 cut(s) 381, 402, 495, 690, 767, 777
MboI GATC 6 cut(s) 379, 400, 493, 688, 765, 775
MflI RGATCY 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 4 cut(s) 248, 328, 388, 605
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 1 cut(s) 985
MmeI TCCRAC 1 cut(s) 521
Mox20I TGGCCA 1 cut(s) 658
MscI TGGCCA 1 cut(s) 658
MseI TTAA 2 cut(s) 416, 911
Msp20I TGGCCA 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 788
NdeII GATC 6 cut(s) 379, 400, 493, 688, 765, 775
NlaIII CATG 4 cut(s) 24, 401, 582, 766
NmuCI GTSAC 3 cut(s) 103, 146, 440
NspI RCATGY 2 cut(s) 24, 582
NspV TTCGAA 2 cut(s) 39, 176
PciI ACATGT 1 cut(s) 20
PfeI GAWTC 2 cut(s) 855, 1019
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 5 cut(s) 409, 436, 478, 621, 677
PleI GAGTC 1 cut(s) 984
PpsI GAGTC 1 cut(s) 984
PscI ACATGT 1 cut(s) 20
PspPI GGNCC 1 cut(s) 680
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
SalI GTCGAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 416, 911
SatI GCNGC 5 cut(s) 408, 435, 477, 620, 676
Sau3AI GATC 6 cut(s) 379, 400, 493, 688, 765, 775
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 1 cut(s) 985
SfaNI GCATC 2 cut(s) 419, 549
SfuI TTCGAA 2 cut(s) 39, 176
SinI GGWCC 1 cut(s) 680
Sse9I AATT 4 cut(s) 248, 328, 388, 605
SsiI CCGC 3 cut(s) 408, 434, 678
SspI AATATT 1 cut(s) 119
SspMI CTAG 3 cut(s) 438, 752, 963
TaaI ACNGT 5 cut(s) 10, 52, 59, 467, 1010
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 39, 79, 176
TaqII GACCGA 1 cut(s) 348
TasI AATT 4 cut(s) 248, 328, 388, 605
TatI WGTACW 1 cut(s) 832
TauI GCSGC 2 cut(s) 410, 437
TfiI GAWTC 2 cut(s) 855, 1019
Tru1I TTAA 2 cut(s) 416, 911
Tru9I TTAA 2 cut(s) 416, 911
TscAI CASTG 3 cut(s) 259, 328, 798
TseFI GTSAC 3 cut(s) 103, 146, 440
TseI GCWGC 3 cut(s) 476, 619, 675
Tsp45I GTSAC 3 cut(s) 103, 146, 440
TspDTI ATGAA 2 cut(s) 474, 539
TspGWI ACGGA 1 cut(s) 978
TspRI CASTG 3 cut(s) 259, 328, 798
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 24, 582
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 3 cut(s) 438, 752, 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.