Rroxscaffold_6G00428820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002389
Physical Location & Seq
Forward (+)
49169139 .. 49169753
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00428820.1

Sequence Viewer

Length: 615 bp
ATGGATATTAGAAGCACTTGCCTAGCTTGTGGTAGTGGAGCCTTTAGGGGAGTTCTGGTCTACTGTAGTAAGTGCAAGGAGTATGCACAGCATGGATATTGCCTTGGAGTGTCAATAGACGAGTATGTTCGTCGTGGGCGTATTTGGTACTGTGAAGATTGCCAAGAGGTGAAGCCAGCTGCCTCCTTTTCCACTCATGATCTCGATGAATGTGAATCCATGGATACCGGAGAAGTGCTGCAAAGCACTCCTCCTTCTGCCGGGACAAGTAGTATCCCTGATGGTACCAATAAGAACTTGAAGGCCAAGAACACCAAGAAGCTGAAAAAGAAGAGTCAGAAGAAGAAATCCAATCGATCTGGATTTGTGGCTAAAACGGTATTAGAGACGATACATGAAGGTAATGAAGAGGCTGAGGATGAGGGCACCGAAATCAATTGTGATGATGGTCACAAGCTAGTTAATGATCAAGAAGGGCATGGTCTTGAAAAAGATCAATTTGATGCCTCCGATGACACTACGGAAATAGATGAAGATGGCGATTCTACTCATGTTGCTGCTCAACCGGTTGCTATTCCAACTTGGAGGAAGCCTAAACATATTGAACAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.48

Weight (kDa)

5.11

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 7 - 54 1.6e-06 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 284
AccB1I GGYRCC 2 cut(s) 284, 425
AccI GTMKAC 1 cut(s) 60
AfaI GTAC 2 cut(s) 149, 286
AfiI CCNNNNNNNGG 1 cut(s) 260
AgeI ACCGGT 1 cut(s) 565
AgsI TTSAA 3 cut(s) 301, 488, 605
AluBI AGCT 4 cut(s) 26, 179, 322, 457
AluI AGCT 4 cut(s) 26, 179, 322, 457
Alw26I GTCTC 1 cut(s) 380
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 179, 238, 557
AsiGI ACCGGT 1 cut(s) 565
Asp718I GGTACC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 428
BanI GGYRCC 2 cut(s) 284, 425
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 166, 225, 544
BccI CCATC 3 cut(s) 275, 440, 530
BciVI GTATCC 2 cut(s) 217, 284
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 2 cut(s) 23, 458
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 2 cut(s) 217, 284
BisI GCNGC 3 cut(s) 180, 239, 558
BlsI GCNGC 3 cut(s) 181, 240, 559
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 3 cut(s) 40, 286, 427
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 493
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 262
Bsa29I ATCGAT 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 103, 219
BsaWI WCCGGW 2 cut(s) 227, 565
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 565
BseCI ATCGAT 1 cut(s) 355
BseDI CCNNGG 2 cut(s) 103, 219
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 405
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 3 cut(s) 166, 225, 544
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 2 cut(s) 284, 425
BshTI ACCGGT 1 cut(s) 565
BshVI ATCGAT 1 cut(s) 355
BsiSI CCGG 3 cut(s) 228, 261, 566
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 4 cut(s) 199, 356, 466, 493
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 355
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 3 cut(s) 40, 286, 427
BspT107I GGYRCC 2 cut(s) 284, 425
BsrFI RCCGGY 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 103, 219
BssMI GATC 4 cut(s) 199, 356, 466, 493
BssT1I CCWWGG 2 cut(s) 103, 219
Bst4CI ACNGT 3 cut(s) 65, 152, 379
Bst6I CTCTTC 2 cut(s) 326, 402
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 424
BstKTI GATC 4 cut(s) 202, 359, 469, 496
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 4 cut(s) 199, 356, 466, 493
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 3 cut(s) 166, 225, 544
Bsu15I ATCGAT 1 cut(s) 355
BsuI GTATCC 2 cut(s) 217, 284
BsuRI GGCC 1 cut(s) 305
BsuTUI ATCGAT 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 355
Csp6I GTAC 2 cut(s) 148, 285
CspAI ACCGGT 1 cut(s) 565
CviAII CATG 6 cut(s) 92, 197, 220, 395, 479, 551
CviQI GTAC 2 cut(s) 148, 285
DdeI CTNAG 1 cut(s) 414
DpnI GATC 4 cut(s) 201, 358, 468, 495
DpnII GATC 4 cut(s) 199, 356, 466, 493
Eam1104I CTCTTC 2 cut(s) 326, 402
EarI CTCTTC 2 cut(s) 326, 402
Eco130I CCWWGG 2 cut(s) 103, 219
EcoT14I CCWWGG 2 cut(s) 103, 219
ErhI CCWWGG 2 cut(s) 103, 219
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 6 cut(s) 95, 200, 223, 398, 482, 554
FaiI YATR 9 cut(s) 84, 93, 126, 198, 221, 396, 480, 552, 600
FaqI GGGAC 1 cut(s) 277
FatI CATG 6 cut(s) 91, 196, 219, 394, 478, 550
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 180, 239, 558
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 180, 239, 558
FspBI CTAG 2 cut(s) 23, 458
GluI GCNGC 3 cut(s) 180, 239, 558
HaeIII GGCC 1 cut(s) 305
HapII CCGG 3 cut(s) 228, 261, 566
Hin1II CATG 6 cut(s) 95, 200, 223, 398, 482, 554
HinfI GANTC 3 cut(s) 215, 334, 542
HpaII CCGG 3 cut(s) 228, 261, 566
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 339, 511
Hpy188III TCNNGA 5 cut(s) 197, 203, 360, 470, 485
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 4 cut(s) 264, 295, 392, 467
HpyCH4III ACNGT 3 cut(s) 65, 152, 379
HpyCH4V TGCA 3 cut(s) 75, 86, 241
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 6 cut(s) 95, 200, 223, 398, 482, 554
KpnI GGTACC 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 199, 356, 466, 493
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 7 cut(s) 41, 189, 241, 274, 291, 345, 579
Lsp1109I GCAGC 3 cut(s) 166, 225, 544
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 23, 458
MaeIII GTNAC 1 cut(s) 449
MalI GATC 4 cut(s) 201, 358, 468, 495
MboI GATC 4 cut(s) 199, 356, 466, 493
MboII GAAGA 6 cut(s) 167, 343, 352, 355, 419, 545
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 2 cut(s) 436, 497
MlyI GAGTC 1 cut(s) 343
MmeI TCCRAC 1 cut(s) 602
MnlI CCTC 8 cut(s) 160, 193, 261, 403, 409, 415, 517, 579
MseI TTAA 2 cut(s) 462, 613
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 3 cut(s) 228, 261, 566
MspR9I CCNGG 1 cut(s) 262
MunI CAATTG 1 cut(s) 436
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 219
NdeII GATC 4 cut(s) 199, 356, 466, 493
NlaIII CATG 6 cut(s) 95, 200, 223, 398, 482, 554
NlaIV GGNNCC 3 cut(s) 40, 286, 427
NmuCI GTSAC 1 cut(s) 449
PagI TCATGA 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 2 cut(s) 215, 542
PinAI ACCGGT 1 cut(s) 565
PkrI GCNGC 3 cut(s) 181, 240, 559
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 40, 286, 427
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 149, 286
RsaNI GTAC 2 cut(s) 148, 285
SaqAI TTAA 2 cut(s) 462, 613
SatI GCNGC 3 cut(s) 180, 239, 558
Sau3AI GATC 4 cut(s) 199, 356, 466, 493
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 428
SetI ASST 6 cut(s) 28, 171, 181, 324, 403, 459
SfaNI GCATC 1 cut(s) 493
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 2 cut(s) 436, 497
SspMI CTAG 2 cut(s) 23, 458
StyD4I CCNGG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 103, 219
TaaI ACNGT 3 cut(s) 65, 152, 379
TaqI TCGA 2 cut(s) 204, 355
TasI AATT 2 cut(s) 436, 497
TfiI GAWTC 2 cut(s) 215, 542
Tru1I TTAA 2 cut(s) 462, 613
Tru9I TTAA 2 cut(s) 462, 613
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 3 cut(s) 179, 238, 557
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 4 cut(s) 222, 411, 420, 546
TspGWI ACGGA 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 2 cut(s) 23, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.