Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2318402 .. 2322085

Gene Structure 3684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1018200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATGCAGGTGACTGTTTGTCAAACGTGTGGGGACAAAGGTATCGAAGATGCTTTGCTTTACTGTGACAAGTGCCAGAATTACGCTCTTCATCGTTATTGCCTTAATGTACCAGCACAGAATATTTTTGATGAAGATCTGACTTGGCTTTGTGAGGATTGTGATCCAAAGATTGTAAAACCTTCTAGAATTGATAAATCAGTAAGATCAACGGAAATTTGTCTTAACAAGAAGTTCAAGAAGAGGAAAAAGAAGTTCAAGAAGAGGAAAAAGAAGAGTAACAGAAAGACTTTACCTATATACAGGGCTAAAAAGAAGGTGCGGAAATGTGAAGGGGCTAACATGAAGGTGCAGATATGTGAAGGGCCTAACATGAAGGTATATGAAGGGGCTAACACAAAGGTGCAGATATGTGAAGGTAGTACCTCTGAACATGAGGCCGAGGGTAGTAATGATTGTGATAATGGTCAGAAGCTTGGTAGTCGGTGCAGTGAGGTTCATAAGGATGAATTCAATTCCTCCAATGACATTGCCAAATCTGTGGAAACCTCTCTAGTTACTACTTGCGACCCTTTAAAAATCTCAGCAATCATTTGTTATGTTGCTGCACAGCCTATTATTGATCCAATCTGGAGGGGAAGTCTCAGCATATTCAACAAAGACTTCAACATTGTTAGTGGACTTGTAGCCCATCTTTCTAGCTTAGCATGTCCTAAAGTACGTGAGGAGGCAGAATTGCTACCGTTGCTGCTTTTTCCAGAACTGGTTAATAGAACAGATGTGTGGCCCAAAGCTTTCGAGAAGTGTGGACCTAACGATCAGAGTATTGCTCTTTATTTCTTTCCTGATAACGAAAGAGATGAGAAGGATTTTGATACCCTGGTGGTTAGCATGATCCAGGATGATTTAGCTATGAGAGCTGTGCTGGAGGATGCTGAGCTCTTAGTTTTCACGTCAGTTATACTGCCAGAGCAGTATCGAAGATTTCAGACAAAGTTTTATTTGTGGGGAGTATTTAGGGCAAAGCAATTTCCACAGTTAACAAATAGTAGTGTTGGTGTCGGGGAGAAAGACGTTGCGATGCCCTTAACCTGTTACGGGCAGAGTCCAGTTAGTACGTTGAGCAACAATGTTGATATTACTTGTGCTCCCGTGCCTCTGAATTCATATTGTCCATCGGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

44.55

Weight (kDa)

7.97

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	7 - 54	6.4e-06	PHD-finger
PHD_pln	PF25054	10 - 37	9.1e-06	PHD-type zinc finger
SPOC_AIPP2	PF23121	211 - 339	2.9e-46	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	3 cut(s)	158, 617, 889
AcsI	RAATTY	3 cut(s)	216, 509, 1162
AfaI	GTAC	4 cut(s)	111, 424, 720, 1117
AfiI	CCNNNNNNNGG	1 cut(s)	1098
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	238, 259, 514, 655, 667
AhdI	GACNNNNNGTC	1 cut(s)	18
AjiI	CACGTC	1 cut(s)	954
AjnI	CCWGG	2 cut(s)	879, 897
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	6 cut(s)	475, 702, 794, 911, 920, 940
AluI	AGCT	6 cut(s)	475, 702, 794, 911, 920, 940
Alw21I	GWGCWC	2 cut(s)	942, 1150
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	3 cut(s)	158, 617, 889
AoxI	GGCC	3 cut(s)	365, 438, 785
ApeKI	GCWGC	2 cut(s)	605, 748
ApoI	RAATTY	3 cut(s)	216, 509, 1162
AspS9I	GGNCC	3 cut(s)	365, 786, 809
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	809
BaeI	ACNNNNGTAYC	4 cut(s)	25, 58, 867, 900
BanII	GRGCYC	1 cut(s)	942
Bbv12I	GWGCWC	2 cut(s)	942, 1150
BbvI	GCAGC	2 cut(s)	592, 735
BccI	CCATC	2 cut(s)	699, 1183
BciT130I	CCWGG	2 cut(s)	881, 899
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	3 cut(s)	186, 554, 699
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	606, 749
BlpI	GCTNAGC	2 cut(s)	703, 936
BlsI	GCNGC	2 cut(s)	607, 750
Bme1390I	CCNGG	2 cut(s)	881, 899
Bme18I	GGWCC	1 cut(s)	809
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgBI	CACGTC	1 cut(s)	954
BmgT120I	GGNCC	3 cut(s)	365, 786, 809
BmrFI	CCNGG	2 cut(s)	881, 899
BmsI	GCATC	3 cut(s)	40, 922, 1071
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	2 cut(s)	652, 947
Bpu1102I	GCTNAGC	2 cut(s)	703, 936
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	2 cut(s)	135, 162
BsaJI	CCNNGG	2 cut(s)	441, 879
BsaXI	ACNNNNNCTCC	4 cut(s)	625, 655, 1132, 1162
Bsc4I	CCNNNNNNNGG	1 cut(s)	1098
Bse1I	ACTGG	2 cut(s)	768, 1109
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	2 cut(s)	135, 162
BseBI	CCWGG	2 cut(s)	881, 899
BseDI	CCNNGG	2 cut(s)	441, 879
BseGI	GGATG	3 cut(s)	511, 907, 937
BseJI	GATNNNNATC	2 cut(s)	135, 162
BseLI	CCNNNNNNNGG	1 cut(s)	1098
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	3 cut(s)	597, 658, 927
BseNI	ACTGG	2 cut(s)	768, 1109
BseRI	GAGGAG	1 cut(s)	740
BseXI	GCAGC	2 cut(s)	592, 735
BsgI	GTGCAG	4 cut(s)	371, 425, 508, 591
BshFI	GGCC	3 cut(s)	367, 440, 787
BsiHKAI	GWGCWC	2 cut(s)	942, 1150
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	1098
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	367, 440, 787
Bsp1286I	GDGCHC	2 cut(s)	942, 1150
Bsp143I	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
Bsp1720I	GCTNAGC	2 cut(s)	703, 936
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	3 cut(s)	367, 440, 787
BspCNI	CTCAG	3 cut(s)	596, 657, 928
BspPI	GGATC	3 cut(s)	158, 617, 889
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	768, 1109
BssECI	CCNNGG	2 cut(s)	441, 879
BssMI	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
Bst2UI	CCWGG	2 cut(s)	881, 899
Bst4CI	ACNGT	4 cut(s)	16, 65, 744, 1038
Bst6I	CTCTTC	4 cut(s)	93, 236, 257, 269
BstBAI	YACGTR	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	583, 644, 703, 936, 943
BstF5I	GGATG	3 cut(s)	511, 907, 937
BstKTI	GATC	6 cut(s)	139, 166, 209, 625, 820, 897
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
BstMWI	GCNNNNNNNGC	2 cut(s)	745, 917
BstNI	CCWGG	2 cut(s)	881, 899
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	2 cut(s)	879, 897
BstV1I	GCAGC	2 cut(s)	592, 735
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	367, 440, 787
BtgZI	GCGATG	1 cut(s)	1094
BtrI	CACGTC	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	511, 907, 937
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	365, 786, 809
Csp6I	GTAC	4 cut(s)	110, 423, 719, 1116
CviAII	CATG	6 cut(s)	343, 373, 434, 708, 892, 1183
CviQI	GTAC	4 cut(s)	110, 423, 719, 1116
DdeI	CTNAG	5 cut(s)	583, 644, 703, 936, 943
DpnI	GATC	6 cut(s)	138, 165, 208, 624, 819, 896
DpnII	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
DraI	TTTAAA	1 cut(s)	576
DriI	GACNNNNNGTC	1 cut(s)	18
Eam1104I	CTCTTC	4 cut(s)	93, 236, 257, 269
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	4 cut(s)	93, 236, 257, 269
Ecl136II	GAGCTC	1 cut(s)	940
Eco24I	GRGCYC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	940
EcoICRI	GAGCTC	1 cut(s)	940
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	2 cut(s)	509, 1162
EcoRII	CCWGG	2 cut(s)	879, 897
EcoT38I	GRGCYC	1 cut(s)	942
FaeI	CATG	6 cut(s)	346, 376, 437, 711, 895, 1186
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	6 cut(s)	342, 372, 433, 707, 891, 1182
Fnu4HI	GCNGC	2 cut(s)	606, 749
FokI	GGATG	3 cut(s)	518, 914, 944
FriOI	GRGCYC	1 cut(s)	942
Fsp4HI	GCNGC	2 cut(s)	606, 749
FspBI	CTAG	3 cut(s)	186, 554, 699
GluI	GCNGC	2 cut(s)	606, 749
GsuI	CTGGAG	2 cut(s)	652, 947
HaeIII	GGCC	3 cut(s)	367, 440, 787
Hin1II	CATG	6 cut(s)	346, 376, 437, 711, 895, 1186
HincII	GTYRAC	1 cut(s)	1041
HindII	GTYRAC	1 cut(s)	1041
HindIII	AAGCTT	2 cut(s)	473, 792
HinfI	GANTC	1 cut(s)	1105
HpaI	GTTAAC	1 cut(s)	1041
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	680, 809, 1041
Hpy188I	TCNGA	6 cut(s)	141, 430, 471, 822, 990, 1161
Hpy188III	TCNNGA	7 cut(s)	186, 238, 259, 631, 758, 799, 845
Hpy8I	GTNNAC	3 cut(s)	680, 809, 1041
HpyAV	CCTTC	9 cut(s)	192, 310, 326, 340, 356, 370, 380, 410, 859
HpyCH4III	ACNGT	4 cut(s)	16, 65, 744, 1038
HpyCH4IV	ACGT	5 cut(s)	26, 721, 953, 1074, 1118
HpyCH4V	TGCA	5 cut(s)	7, 352, 406, 489, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	745, 917
HpyF3I	CTNAG	5 cut(s)	583, 644, 703, 936, 943
HpySE526I	ACGT	5 cut(s)	26, 721, 953, 1074, 1118
Hsp92II	CATG	6 cut(s)	346, 376, 437, 711, 895, 1186
KspAI	GTTAAC	1 cut(s)	1041
Kzo9I	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	1153
Lsp1109I	GCAGC	2 cut(s)	592, 735
LweI	GCATC	3 cut(s)	40, 922, 1071
MaeI	CTAG	3 cut(s)	186, 554, 699
MaeII	ACGT	5 cut(s)	26, 721, 953, 1074, 1118
MaeIII	GTNAC	5 cut(s)	10, 65, 278, 556, 1094
MalI	GATC	6 cut(s)	138, 165, 208, 624, 819, 896
MboI	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
MboII	GAAGA	7 cut(s)	59, 80, 146, 253, 274, 286, 993
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	942, 1150
MluCI	AATT	8 cut(s)	79, 189, 216, 509, 514, 734, 1028, 1162
MlyI	GAGTC	1 cut(s)	1114
MseI	TTAA	6 cut(s)	105, 225, 575, 768, 1040, 1088
MslI	CAYNNNNRTG	3 cut(s)	347, 401, 504
MspR9I	CCNGG	2 cut(s)	881, 899
MvaI	CCWGG	2 cut(s)	881, 899
MwoI	GCNNNNNNNGC	2 cut(s)	745, 917
NdeII	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
NlaIII	CATG	6 cut(s)	346, 376, 437, 711, 895, 1186
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	2 cut(s)	10, 65
NspI	RCATGY	1 cut(s)	711
OliI	CACNNNNGTG	1 cut(s)	401
PciSI	GCTCTTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	2 cut(s)	607, 750
PleI	GAGTC	1 cut(s)	1113
PpsI	GAGTC	1 cut(s)	1113
Ppu21I	YACGTR	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	942
Psp6I	CCWGG	2 cut(s)	879, 897
PspGI	CCWGG	2 cut(s)	879, 897
PspPI	GGNCC	3 cut(s)	365, 786, 809
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	4 cut(s)	111, 424, 720, 1117
RsaNI	GTAC	4 cut(s)	110, 423, 719, 1116
RseI	CAYNNNNRTG	3 cut(s)	347, 401, 504
SacI	GAGCTC	1 cut(s)	942
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	6 cut(s)	105, 225, 575, 768, 1040, 1088
SatI	GCNGC	2 cut(s)	606, 749
Sau3AI	GATC	6 cut(s)	136, 163, 206, 622, 817, 894
Sau96I	GGNCC	3 cut(s)	365, 786, 809
SchI	GAGTC	1 cut(s)	1114
ScrFI	CCNGG	2 cut(s)	881, 899
SduI	GDGCHC	2 cut(s)	942, 1150
SfaNI	GCATC	3 cut(s)	40, 922, 1071
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	3 cut(s)	347, 401, 504
Sse9I	AATT	8 cut(s)	79, 189, 216, 509, 514, 734, 1028, 1162
SsiI	CCGC	1 cut(s)	322
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	3 cut(s)	186, 554, 699
SstI	GAGCTC	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	879, 897
TaaI	ACNGT	4 cut(s)	16, 65, 744, 1038
TaiI	ACGT	5 cut(s)	29, 724, 956, 1077, 1121
TaqI	TCGA	3 cut(s)	45, 798, 979
TaqII	GACCGA	1 cut(s)	1168
TasI	AATT	8 cut(s)	79, 189, 216, 509, 514, 734, 1028, 1162
Tru1I	TTAA	6 cut(s)	105, 225, 575, 768, 1040, 1088
Tru9I	TTAA	6 cut(s)	105, 225, 575, 768, 1040, 1088
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	10, 65
TseI	GCWGC	2 cut(s)	605, 748
Tsp45I	GTSAC	2 cut(s)	10, 65
TspDTI	ATGAA	8 cut(s)	80, 147, 359, 389, 399, 488, 522, 1155
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	3 cut(s)	216, 509, 1162
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	711
XspI	CTAG	3 cut(s)	186, 554, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.