Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

19953729 .. 19958018

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGTAAACTGTCCAAGGTGTCAAGATAGTGCACAACATGTTTATTGCCTTGATGTGATACCAGTAAAATATTATGAGGACGATTTTACCTGGGTTTGTGACGATTGCAAGAAGAGGAAGAGGTTTAAAAAGAAGAGTAATAGAAAGAAACTCACTGGGTCTGTGGCTAAAACCAAGGTTCAGATATGTGAAGGTAACCCTCCTGAACACAAGGCTAAGGGCAGTGAAGATCAGGTCAATTCCTCCCATGATTTGGCCGCATCTGTAAAGACCCTTCAATTAGCTGCTAGCGACCCTTCAGAAATCAATGAAGACTGTTATATTGCTGCACAGCCTATTATTGATCTAACTTGGAGGGGAAGTCTAAGCATAATGAACAAAGACTTCAGCATCATTAGTGGCCTTGTAGCCCATCTCTCAAGCTTAGCATGTGCTAAAGTGTTTGAAGAGGCGAAATTGCTACCGATGATGCTGTTTCCAGATTTGGTTTGTAGGGTTGATGTGTGGCCAAAGGCATTTCAGAGCTCCGGACCGAGTGATCATAGTATTGCTCTTTATTTTTTTCCTGCCAGCGAAAGTAATGAGATGGATTTTGACAACCTAGTTGTTAGCATGATCCAGGAGGATCTTGCTATGAGGGCAGTGCTGGATAACACTGAGCTCTTAGTCTTCACTTCAATTGTACTGCCTGAGCATATTCAAAGATTCCAGACAAAGCTTTATTTGTGGGGAGTATTTAGGGGGAAGCAGTCTTCCCCCATTAACAAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.03

Weight (kDa)

6.31

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_pln	PF25054	8 - 52	1.9e-06	PHD-type zinc finger
SPOC_AIPP2	PF23121	134 - 251	1.4e-38	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	2 cut(s)	610, 633
AcoI	YGGCCR	2 cut(s)	255, 506
AcuI	CTGAAG	2 cut(s)	282, 370
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	4 cut(s)	278, 446, 678, 701
AjnI	CCWGG	2 cut(s)	89, 618
AluBI	AGCT	5 cut(s)	284, 423, 525, 661, 718
AluI	AGCT	5 cut(s)	284, 423, 525, 661, 718
Alw21I	GWGCWC	3 cut(s)	34, 527, 663
Alw44I	GTGCAC	1 cut(s)	30
AlwI	GGATC	2 cut(s)	610, 633
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	3 cut(s)	255, 400, 506
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	284, 326
AspS9I	GGNCC	1 cut(s)	530
AsuNHI	GCTAGC	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	527, 663
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BbsI	GAAGAC	3 cut(s)	318, 661, 744
Bbv12I	GWGCWC	3 cut(s)	34, 527, 663
BbvI	GCAGC	2 cut(s)	271, 313
BccI	CCATC	2 cut(s)	420, 580
BciT130I	CCWGG	2 cut(s)	91, 620
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	2 cut(s)	288, 602
BisI	GCNGC	3 cut(s)	258, 285, 327
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	3 cut(s)	259, 286, 328
Bme1390I	CCNGG	2 cut(s)	91, 620
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmrFI	CCNGG	2 cut(s)	91, 620
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	3 cut(s)	269, 399, 459
BmtI	GCTAGC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	165
BpiI	GAAGAC	3 cut(s)	318, 661, 744
Bpu10I	CCTNAGC	2 cut(s)	216, 690
Bpu1102I	GCTNAGC	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	14, 90, 174
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	62, 160
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	91, 620
BseDI	CCNNGG	3 cut(s)	14, 90, 174
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	648, 681
BseNI	ACTGG	2 cut(s)	62, 160
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	271, 313
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	257, 402, 508
BsiHKAI	GWGCWC	3 cut(s)	34, 527, 663
BsiSI	CCGG	1 cut(s)	528
BslI	CCNNNNNNNGG	1 cut(s)	253
BsnI	GGCC	3 cut(s)	257, 402, 508
Bsp1286I	GDGCHC	3 cut(s)	34, 527, 663
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	5 cut(s)	229, 343, 538, 615, 625
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	3 cut(s)	257, 402, 508
BspCNI	CTCAG	2 cut(s)	649, 682
BspEI	TCCGGA	1 cut(s)	527
BspOI	GCTAGC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	610, 633
BsrI	ACTGG	2 cut(s)	62, 160
BssECI	CCNNGG	3 cut(s)	14, 90, 174
BssMI	GATC	5 cut(s)	229, 343, 538, 615, 625
BssT1I	CCWWGG	2 cut(s)	14, 174
Bst2UI	CCWGG	2 cut(s)	91, 620
Bst4CI	ACNGT	2 cut(s)	11, 317
Bst6I	CTCTTC	4 cut(s)	107, 113, 128, 441
BstC8I	GCNNGC	2 cut(s)	289, 571
BstDEI	CTNAG	6 cut(s)	216, 365, 424, 657, 664, 690
BstEII	GGTNACC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	232, 346, 541, 618, 628
BstMBI	GATC	5 cut(s)	229, 343, 538, 615, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	2 cut(s)	91, 620
BstNSI	RCATGY	2 cut(s)	41, 432
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	89, 618
BstSLI	GKGCMC	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	271, 313
BstV2I	GAAGAC	3 cut(s)	318, 661, 744
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	257, 402, 508
BtsI	GCAGTG	2 cut(s)	229, 648
BtsIMutI	CAGTG	4 cut(s)	153, 229, 648, 654
Cac8I	GCNNGC	2 cut(s)	289, 571
Cfr13I	GGNCC	1 cut(s)	530
CpoI	CGGWCCG	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	683
CspI	CGGWCCG	1 cut(s)	530
CviAII	CATG	4 cut(s)	38, 248, 429, 613
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	6 cut(s)	216, 365, 424, 657, 664, 690
DpnI	GATC	5 cut(s)	231, 345, 540, 617, 627
DpnII	GATC	5 cut(s)	229, 343, 538, 615, 625
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	255, 506
Eam1104I	CTCTTC	4 cut(s)	107, 113, 128, 441
EarI	CTCTTC	4 cut(s)	107, 113, 128, 441
Ecl136II	GAGCTC	2 cut(s)	525, 661
Eco130I	CCWWGG	2 cut(s)	14, 174
Eco24I	GRGCYC	2 cut(s)	527, 663
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	2 cut(s)	525, 661
Eco57I	CTGAAG	2 cut(s)	282, 370
Eco91I	GGTNACC	1 cut(s)	194
EcoICRI	GAGCTC	2 cut(s)	525, 661
EcoO65I	GGTNACC	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	89, 618
EcoT14I	CCWWGG	2 cut(s)	14, 174
EcoT38I	GRGCYC	2 cut(s)	527, 663
ErhI	CCWWGG	2 cut(s)	14, 174
FaeI	CATG	4 cut(s)	41, 251, 432, 616
FatI	CATG	4 cut(s)	37, 247, 428, 612
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	258, 285, 327
FriOI	GRGCYC	2 cut(s)	527, 663
Fsp4HI	GCNGC	3 cut(s)	258, 285, 327
FspBI	CTAG	2 cut(s)	288, 602
GluI	GCNGC	3 cut(s)	258, 285, 327
HaeIII	GGCC	3 cut(s)	257, 402, 508
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	4 cut(s)	41, 251, 432, 616
HindIII	AAGCTT	2 cut(s)	421, 716
HinfI	GANTC	1 cut(s)	705
HpaII	CCGG	1 cut(s)	528
Hpy166II	GTNNAC	2 cut(s)	7, 32
Hpy188I	TCNGA	3 cut(s)	183, 301, 522
Hpy188III	TCNNGA	5 cut(s)	23, 203, 479, 528, 709
Hpy8I	GTNNAC	2 cut(s)	7, 32
HpyAV	CCTTC	3 cut(s)	185, 284, 306
HpyCH4III	ACNGT	2 cut(s)	11, 317
HpyCH4V	TGCA	3 cut(s)	32, 108, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	6 cut(s)	216, 365, 424, 657, 664, 690
Hsp92II	CATG	4 cut(s)	41, 251, 432, 616
Kpn2I	TCCGGA	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	229, 343, 538, 615, 625
LmnI	GCTCC	1 cut(s)	530
Lsp1109I	GCAGC	2 cut(s)	271, 313
LweI	GCATC	3 cut(s)	269, 399, 459
MaeI	CTAG	2 cut(s)	288, 602
MaeIII	GTNAC	2 cut(s)	98, 194
MalI	GATC	5 cut(s)	231, 345, 540, 617, 627
MboI	GATC	5 cut(s)	229, 343, 538, 615, 625
MboII	GAAGA	8 cut(s)	124, 130, 145, 239, 323, 458, 661, 744
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	34, 527, 663
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	4 cut(s)	238, 278, 455, 678
MluNI	TGGCCA	1 cut(s)	508
MnlI	CCTC	9 cut(s)	70, 108, 114, 210, 253, 348, 442, 616, 630
Mox20I	TGGCCA	1 cut(s)	508
MroI	TCCGGA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	2 cut(s)	126, 762
Msp20I	TGGCCA	1 cut(s)	508
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	2 cut(s)	91, 620
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	91, 620
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	5 cut(s)	229, 343, 538, 615, 625
NheI	GCTAGC	1 cut(s)	287
NlaIII	CATG	4 cut(s)	41, 251, 432, 616
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	2 cut(s)	41, 432
PciI	ACATGT	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	705
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	3 cut(s)	259, 286, 328
PscI	ACATGT	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	527, 663
Psp6I	CCWGG	2 cut(s)	89, 618
PspEI	GGTNACC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	89, 618
PspPI	GGNCC	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
Rsr2I	CGGWCCG	1 cut(s)	530
RsrII	CGGWCCG	1 cut(s)	530
SacI	GAGCTC	2 cut(s)	527, 663
SaqAI	TTAA	2 cut(s)	126, 762
SatI	GCNGC	3 cut(s)	258, 285, 327
Sau3AI	GATC	5 cut(s)	229, 343, 538, 615, 625
Sau96I	GGNCC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	91, 620
SduI	GDGCHC	3 cut(s)	34, 527, 663
SfaNI	GCATC	3 cut(s)	269, 399, 459
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	4 cut(s)	238, 278, 455, 678
SsiI	CCGC	1 cut(s)	258
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	2 cut(s)	288, 602
SstI	GAGCTC	2 cut(s)	527, 663
StyD4I	CCNGG	2 cut(s)	89, 618
StyI	CCWWGG	2 cut(s)	14, 174
TaaI	ACNGT	2 cut(s)	11, 317
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	4 cut(s)	238, 278, 455, 678
TatI	WGTACW	1 cut(s)	682
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	705
Tru1I	TTAA	2 cut(s)	126, 762
Tru9I	TTAA	2 cut(s)	126, 762
TscAI	CASTG	4 cut(s)	160, 229, 648, 661
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	284, 326
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	324, 389
TspRI	CASTG	4 cut(s)	160, 229, 648, 661
Van91I	CCANNNNNTGG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	530
XceI	RCATGY	2 cut(s)	41, 432
XspI	CTAG	2 cut(s)	288, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.