Rh6AG213200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002389
Physical Location & Seq
Reverse (-)
38034544 .. 38038835
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG213200.1

Sequence Viewer

Length: 732 bp
ATGGTAACTGTCTGTCTAACATGTGGTGATAGAGGCTTCGAAAAGGTTACGGTAAACTGTTCAAAGTGTCAAGATAGTCCACAACATATTTATTGCCTTGACGTGACACCAGAAAAATATTTTGAGAAAGATTTTACTTGGGTTTGTGACGAGTGTAAACCAGTCTCTATCCCTTCGAAAAGTCATCATAACGAAAACTCCGAGAAGAAGAAGAGGAAGAAGTTGAAAAAGAAGAGTAATAGAAAGAAATTCACTGGGTCTGTGGCTAAAACGAAGGTTCAGATATGTGAAGGTAGCCCTCCTGAACACGAGGCTAAGGGCAGTGAAAATTGTGATAATGTTCTAAAGATTGGTAATCGGTCGGGACAGGTTCTTGAAGATCAGGTCAATTCCTCCCATGATCTGGCCGCATCTTTAAAGACCCCTCAAATAGCGGCTAGTGACCCTTTGAAAATCAATGAAGACTGTTATGTTGCTGCACAGCCTATTATTGATCCAACTTGGAGGGGAAGTCTAAGCATAATGAACAAAGACTTCAGCATCATTAGTGGACTTGTAGCTCATCTTTCAAGCTTAGCATGTGCTAAAGTGTTTGAAGAGGCGAAATTGCTACCAATGCTGCTGTTTCCAGATTTGGTTTGTAGGGTTGATGTGTGGCCAAAGGCGTTTGAGAGCTGCGGACCAAGTGATCAGAGTATTGCTCTTTATTTTTTTCCTGACAGCAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.04

Weight (kDa)

8.17

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOC_AIPP2 PF23121 168 - 241 1.4e-20 AIPP2, SPOC-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 403
AciI CCGC 3 cut(s) 408, 434, 678
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 2 cut(s) 405, 656
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 520
AfiI CCNNNNNNNGG 1 cut(s) 403
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 6 cut(s) 63, 226, 377, 451, 570, 596
AjiI CACGTC 1 cut(s) 103
AluBI AGCT 3 cut(s) 560, 573, 675
AluI AGCT 3 cut(s) 560, 573, 675
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 488
AoxI GGCC 2 cut(s) 405, 656
ApeKI GCWGC 3 cut(s) 476, 619, 675
ApoI RAATTY 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 2 cut(s) 39, 176
AvaII GGWCC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 658
BauI CACGAG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 463, 606, 662
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 438
BisI GCNGC 5 cut(s) 408, 435, 477, 620, 676
BlpI GCTNAGC 1 cut(s) 574
BlsI GCNGC 5 cut(s) 409, 436, 478, 621, 677
Bme18I GGWCC 1 cut(s) 680
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 680
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 419, 549
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 685, 717
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 574
Bpu14I TTCGAA 2 cut(s) 39, 176
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 496, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse1I ACTGG 2 cut(s) 161, 259
BseLI CCNNNNNNNGG 1 cut(s) 403
BseNI ACTGG 2 cut(s) 161, 259
BseXI GCAGC 3 cut(s) 463, 606, 662
BsgI GTGCAG 1 cut(s) 462
Bsh1285I CGRYCG 1 cut(s) 362
BshFI GGCC 2 cut(s) 407, 658
BsiEI CGRYCG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 2 cut(s) 407, 658
Bsp119I TTCGAA 2 cut(s) 39, 176
Bsp143I GATC 4 cut(s) 379, 400, 493, 688
Bsp1720I GCTNAGC 1 cut(s) 574
BspACI CCGC 3 cut(s) 408, 434, 678
BspANI GGCC 2 cut(s) 407, 658
BspPI GGATC 1 cut(s) 488
BspT104I TTCGAA 2 cut(s) 39, 176
BsrI ACTGG 2 cut(s) 161, 259
BssMI GATC 4 cut(s) 379, 400, 493, 688
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst4CI ACNGT 4 cut(s) 10, 52, 59, 467
Bst6I CTCTTC 3 cut(s) 206, 227, 591
BstBI TTCGAA 2 cut(s) 39, 176
BstDEI CTNAG 3 cut(s) 315, 515, 574
BstKTI GATC 4 cut(s) 382, 403, 496, 691
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 379, 400, 493, 688
BstMCI CGRYCG 1 cut(s) 362
BstMWI GCNNNNNNNGC 1 cut(s) 616
BstNSI RCATGY 2 cut(s) 24, 582
BstV1I GCAGC 3 cut(s) 463, 606, 662
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 407, 658
BtrI CACGTC 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 252, 328
Cfr13I GGNCC 1 cut(s) 680
CviAII CATG 3 cut(s) 21, 398, 579
DdeI CTNAG 3 cut(s) 315, 515, 574
DpnI GATC 4 cut(s) 381, 402, 495, 690
DpnII GATC 4 cut(s) 379, 400, 493, 688
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 405, 656
Eam1104I CTCTTC 3 cut(s) 206, 227, 591
EarI CTCTTC 3 cut(s) 206, 227, 591
Eco47I GGWCC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 520
FaeI CATG 3 cut(s) 24, 401, 582
FaiI YATR 8 cut(s) 22, 87, 189, 286, 399, 471, 521, 580
FaqI GGGAC 1 cut(s) 378
FatI CATG 3 cut(s) 20, 397, 578
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 408, 435, 477, 620, 676
Fsp4HI GCNGC 5 cut(s) 408, 435, 477, 620, 676
FspBI CTAG 1 cut(s) 438
GluI GCNGC 5 cut(s) 408, 435, 477, 620, 676
HaeIII GGCC 2 cut(s) 407, 658
Hin1II CATG 3 cut(s) 24, 401, 582
HindIII AAGCTT 1 cut(s) 571
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 4 cut(s) 55, 80, 158, 551
Hpy188I TCNGA 3 cut(s) 202, 282, 693
Hpy188III TCNNGA 6 cut(s) 71, 302, 363, 374, 629, 716
Hpy8I GTNNAC 4 cut(s) 55, 80, 158, 551
HpyAV CCTTC 3 cut(s) 183, 268, 284
HpyCH4III ACNGT 4 cut(s) 10, 52, 59, 467
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 616
HpyF3I CTNAG 3 cut(s) 315, 515, 574
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 24, 401, 582
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 4 cut(s) 379, 400, 493, 688
LpnPI CCDG 8 cut(s) 123, 174, 240, 315, 353, 368, 389, 642
Lsp1109I GCAGC 3 cut(s) 463, 606, 662
LweI GCATC 2 cut(s) 419, 549
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 5 cut(s) 4, 46, 103, 146, 440
MalI GATC 4 cut(s) 381, 402, 495, 690
MboI GATC 4 cut(s) 379, 400, 493, 688
MboII GAAGA 8 cut(s) 217, 220, 223, 229, 244, 389, 473, 608
MlsI TGGCCA 1 cut(s) 658
MluCI AATT 4 cut(s) 248, 328, 388, 605
MluNI TGGCCA 1 cut(s) 658
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 8 cut(s) 26, 207, 304, 309, 403, 435, 498, 592
Mox20I TGGCCA 1 cut(s) 658
MscI TGGCCA 1 cut(s) 658
MseI TTAA 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 616
NdeII GATC 4 cut(s) 379, 400, 493, 688
NlaIII CATG 3 cut(s) 24, 401, 582
NmuCI GTSAC 3 cut(s) 103, 146, 440
NspI RCATGY 2 cut(s) 24, 582
NspV TTCGAA 2 cut(s) 39, 176
PciI ACATGT 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 5 cut(s) 409, 436, 478, 621, 677
PscI ACATGT 1 cut(s) 20
PspPI GGNCC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 5 cut(s) 408, 435, 477, 620, 676
Sau3AI GATC 4 cut(s) 379, 400, 493, 688
Sau96I GGNCC 1 cut(s) 680
SfaNI GCATC 2 cut(s) 419, 549
SfuI TTCGAA 2 cut(s) 39, 176
SinI GGWCC 1 cut(s) 680
Sse9I AATT 4 cut(s) 248, 328, 388, 605
SsiI CCGC 3 cut(s) 408, 434, 678
SspI AATATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 438
TaaI ACNGT 4 cut(s) 10, 52, 59, 467
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 39, 176
TaqII GACCGA 1 cut(s) 348
TasI AATT 4 cut(s) 248, 328, 388, 605
TauI GCSGC 2 cut(s) 410, 437
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 259, 328
TseFI GTSAC 3 cut(s) 103, 146, 440
TseI GCWGC 3 cut(s) 476, 619, 675
Tsp45I GTSAC 3 cut(s) 103, 146, 440
TspDTI ATGAA 2 cut(s) 474, 539
TspRI CASTG 2 cut(s) 259, 328
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 1 cut(s) 248
XceI RCATGY 2 cut(s) 24, 582
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.