Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

3265171 .. 3267507

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1018500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTATTCCAATTCGTATACCATAAAAATGGGTTATTGGTGTAGCAGTTGTTATCGGGGCTATAAAGTAAATGTTTTTAATGGTAATCTTTGTCTAGATGTCAAGGTGACTGTGTGTCAAACGTGTGGCGACAGAGGTATCGAAGATGCTTTGCTTTTCTGTGACAAGTGCCAGAATTATGCTCTTCATCGTTATTGCCTTAATGTACCAGCAGAAAATATTTTTGATGAAGATCTGACTTGGCTTTGTGAGGATTGTGATCCAAAGATTGTAAAGCTTTGTAGAATTGATAAATCAGTAAGATCAATGGAAATTTGTCATAACAAGAAGTTCAAGAAGAGGAGGAAGAAGAGTAAAAGAAAGACTTTACCTATATACGGGGCTAAAAAGAAGGTGCAGAAATGTGCAGGGGCGAAGATGAAGGTGCAGATATGTGAAGGGGCTAACACGAAGGTGGAGATACATGAAGGTAGTCCCTCTGAACATGAGGCCGAGGGTAGTAATGATTGTGATAATGGTCAGAACCTTGGTAGTCAGTGTGACGAGGTTCGTGAGGATCAATTGAATTCCTCTGATGACGTTGCCAAATCTGTAAAAACTTCTCTAGTTACTACTTCCGACCCTTTAAATACCTCAGAAATAATTTGTTATGTTGCTGCACAGCCTATTATTGATCCAGTCTGGAGGGGTAGCCTCAGCATATTCAACAAAGACTTCAACATTGTTAGTGGACTTGTAGCCCATCTCTCTAGCTTAGCCTGTCCAAAAGTACGTGAGGAGGCAGAATTGCTACCGTTACTGCTTTTTCCAGAATTGGTTAATAGAACAGATGTGTGGCCCAAAGCTTTCGAGAAGTGCGGACCTAACGATCAGAGTATTGCTCTTTATTTCTTTTCTGATAACGAAAGAGATGAGAAGGATTTTGACACCATGGTGGCTAGCATGATCCAGGATGATCTAGCTATGAGAGCTGTGCTGGACGATGCTGAGCTCTTAGTTTTCACGTCAATCATACTGCCAGAGCAGTATCGGAGATTTCAGGCAAAGTTTTATTTGTGGGGAGTATTTAGGGCTAAGCAAATTCCGCAGTTAACAAATAATAACGTCGGGGTCGAGGAGAATGACGTTGCAAAGCCGTTAACCTGTTATGGGCAGAGTCCAGTTAGTACGTTGAGCAACGATGTAGAAATTACTTGTGCTGCTGTACCTCTTAATTCCTATTGTCCATCGGTCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

46.36

Weight (kDa)

5.49

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	39 - 86	2.5e-06	PHD-finger
SPOC_AIPP2	PF23121	228 - 356	2.3e-45	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	2 cut(s)	858, 1085
AclWI	GGATC	4 cut(s)	254, 564, 668, 940
AcsI	RAATTY	3 cut(s)	312, 565, 1080
AfaI	GTAC	4 cut(s)	207, 771, 1168, 1206
AfiI	CCNNNNNNNGG	2 cut(s)	377, 1149
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	4 cut(s)	334, 565, 706, 718
AhdI	GACNNNNNGTC	1 cut(s)	114
AjiI	CACGTC	1 cut(s)	1005
AjnI	CCWGG	1 cut(s)	948
AleI	CACNNNNGTG	2 cut(s)	452, 932
AluBI	AGCT	6 cut(s)	277, 753, 845, 962, 971, 991
AluI	AGCT	6 cut(s)	277, 753, 845, 962, 971, 991
Alw21I	GWGCWC	1 cut(s)	993
AlwI	GGATC	4 cut(s)	254, 564, 668, 940
AoxI	GGCC	2 cut(s)	489, 836
ApeKI	GCWGC	2 cut(s)	656, 1199
ApoI	RAATTY	3 cut(s)	312, 565, 1080
AspS9I	GGNCC	2 cut(s)	837, 860
AsuHPI	GGTGA	1 cut(s)	118
AsuNHI	GCTAGC	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	860
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanII	GRGCYC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	993
BbvCI	CCTCAGC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	643, 1186
BccI	CCATC	2 cut(s)	750, 1234
BceAI	ACGGC	1 cut(s)	1120
BciT130I	CCWGG	1 cut(s)	950
BfaI	CTAG	5 cut(s)	95, 605, 750, 939, 959
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	2 cut(s)	657, 1200
BlpI	GCTNAGC	3 cut(s)	754, 987, 1074
BlsI	GCNGC	2 cut(s)	658, 1201
Bme1390I	CCNGG	1 cut(s)	950
Bme18I	GGWCC	1 cut(s)	860
BmeRI	GACNNNNNGTC	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	1005
BmgT120I	GGNCC	2 cut(s)	837, 860
BmrFI	CCNGG	1 cut(s)	950
BmsI	GCATC	2 cut(s)	136, 973
BmtI	GCTAGC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	865, 897
BpmI	CTGGAG	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	695
Bpu1102I	GCTNAGC	3 cut(s)	754, 987, 1074
BsaAI	YACGTR	1 cut(s)	773
BsaBI	GATNNNNATC	2 cut(s)	231, 258
BsaJI	CCNNGG	3 cut(s)	492, 526, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 1149
Bse1I	ACTGG	2 cut(s)	677, 1160
Bse8I	GATNNNNATC	2 cut(s)	231, 258
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	492, 526, 930
BseGI	GGATG	1 cut(s)	958
BseJI	GATNNNNATC	2 cut(s)	231, 258
BseLI	CCNNNNNNNGG	2 cut(s)	377, 1149
BseMII	CTCAG	3 cut(s)	648, 709, 978
BseNI	ACTGG	2 cut(s)	677, 1160
BseRI	GAGGAG	3 cut(s)	355, 791, 1130
BseXI	GCAGC	2 cut(s)	643, 1186
BsgI	GTGCAG	4 cut(s)	416, 426, 446, 642
BshFI	GGCC	2 cut(s)	491, 838
BsiHKAI	GWGCWC	1 cut(s)	993
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	377, 1149
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	491, 838
Bsp1286I	GDGCHC	1 cut(s)	993
Bsp143I	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
Bsp1720I	GCTNAGC	3 cut(s)	754, 987, 1074
Bsp19I	CCATGG	1 cut(s)	930
BspACI	CCGC	2 cut(s)	858, 1085
BspANI	GGCC	2 cut(s)	491, 838
BspCNI	CTCAG	3 cut(s)	647, 708, 979
BspOI	GCTAGC	1 cut(s)	942
BspPI	GGATC	4 cut(s)	254, 564, 668, 940
BspQI	GCTCTTC	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	677, 1160
BssECI	CCNNGG	3 cut(s)	492, 526, 930
BssMI	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
BssNAI	GTATAC	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	526, 930
Bst1107I	GTATAC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	2 cut(s)	112, 795
Bst6I	CTCTTC	3 cut(s)	189, 332, 344
BstBAI	YACGTR	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	6 cut(s)	634, 695, 754, 987, 994, 1074
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	1 cut(s)	958
BstKTI	GATC	8 cut(s)	235, 262, 305, 559, 676, 871, 948, 958
BstMBI	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	968, 1084
BstNI	CCWGG	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	948
BstV1I	GCAGC	2 cut(s)	643, 1186
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	232
BstZ17I	GTATAC	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	491, 838
BtgI	CCRYGG	1 cut(s)	930
BtrI	CACGTC	1 cut(s)	1005
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	940
Cfr13I	GGNCC	2 cut(s)	837, 860
Csp6I	GTAC	4 cut(s)	206, 770, 1167, 1205
CviAII	CATG	5 cut(s)	464, 485, 931, 943, 1234
CviQI	GTAC	4 cut(s)	206, 770, 1167, 1205
DdeI	CTNAG	6 cut(s)	634, 695, 754, 987, 994, 1074
DpnI	GATC	8 cut(s)	234, 261, 304, 558, 675, 870, 947, 957
DpnII	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
DraI	TTTAAA	1 cut(s)	627
DriI	GACNNNNNGTC	1 cut(s)	114
Eam1104I	CTCTTC	3 cut(s)	189, 332, 344
Eam1105I	GACNNNNNGTC	1 cut(s)	114
EarI	CTCTTC	3 cut(s)	189, 332, 344
Ecl136II	GAGCTC	1 cut(s)	991
Eco130I	CCWWGG	2 cut(s)	526, 930
Eco24I	GRGCYC	1 cut(s)	993
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	991
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	948
EcoT14I	CCWWGG	2 cut(s)	526, 930
EcoT38I	GRGCYC	1 cut(s)	993
ErhI	CCWWGG	2 cut(s)	526, 930
FaeI	CATG	5 cut(s)	467, 488, 934, 946, 1237
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	5 cut(s)	463, 484, 930, 942, 1233
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	657, 1200
FokI	GGATG	1 cut(s)	965
FriOI	GRGCYC	1 cut(s)	993
Fsp4HI	GCNGC	2 cut(s)	657, 1200
FspBI	CTAG	5 cut(s)	95, 605, 750, 939, 959
GluI	GCNGC	2 cut(s)	657, 1200
GsuI	CTGGAG	1 cut(s)	703
HaeIII	GGCC	2 cut(s)	491, 838
Hin1II	CATG	5 cut(s)	467, 488, 934, 946, 1237
HincII	GTYRAC	2 cut(s)	1092, 1140
HindII	GTYRAC	2 cut(s)	1092, 1140
HindIII	AAGCTT	2 cut(s)	275, 843
HinfI	GANTC	1 cut(s)	1156
HpaI	GTTAAC	2 cut(s)	1092, 1140
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	4 cut(s)	18, 731, 1092, 1140
Hpy188I	TCNGA	9 cut(s)	237, 481, 522, 574, 619, 637, 873, 898, 1032
Hpy188III	TCNNGA	6 cut(s)	95, 334, 551, 682, 809, 850
Hpy8I	GTNNAC	4 cut(s)	18, 731, 1092, 1140
Hpy99I	CGWCG	1 cut(s)	1109
HpyAV	CCTTC	6 cut(s)	385, 415, 431, 445, 461, 910
HpyCH4III	ACNGT	2 cut(s)	112, 795
HpyCH4IV	ACGT	7 cut(s)	122, 579, 772, 1004, 1104, 1125, 1169
HpyCH4V	TGCA	5 cut(s)	397, 407, 427, 659, 1130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	968, 1084
HpyF3I	CTNAG	6 cut(s)	634, 695, 754, 987, 994, 1074
HpySE526I	ACGT	7 cut(s)	122, 579, 772, 1004, 1104, 1125, 1169
Hsp92II	CATG	5 cut(s)	467, 488, 934, 946, 1237
KspAI	GTTAAC	2 cut(s)	1092, 1140
Kzo9I	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
LguI	GCTCTTC	1 cut(s)	189
Lsp1109I	GCAGC	2 cut(s)	643, 1186
LweI	GCATC	2 cut(s)	136, 973
MaeI	CTAG	5 cut(s)	95, 605, 750, 939, 959
MaeII	ACGT	7 cut(s)	122, 579, 772, 1004, 1104, 1125, 1169
MaeIII	GTNAC	5 cut(s)	106, 161, 539, 607, 795
MalI	GATC	8 cut(s)	234, 261, 304, 558, 675, 870, 947, 957
MboI	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
MboII	GAAGA	7 cut(s)	155, 176, 242, 349, 358, 361, 427
MfeI	CAATTG	1 cut(s)	560
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	993
MlyI	GAGTC	1 cut(s)	1165
MmeI	TCCRAC	1 cut(s)	642
MseI	TTAA	7 cut(s)	78, 201, 626, 819, 1091, 1139, 1212
MslI	CAYNNNNRTG	3 cut(s)	26, 452, 932
MspR9I	CCNGG	1 cut(s)	950
MunI	CAATTG	1 cut(s)	560
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	2 cut(s)	968, 1084
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
NheI	GCTAGC	1 cut(s)	938
NlaIII	CATG	5 cut(s)	467, 488, 934, 946, 1237
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	3 cut(s)	106, 161, 539
OliI	CACNNNNGTG	2 cut(s)	452, 932
PciSI	GCTCTTC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	1110
PfoI	TCCNGGA	1 cut(s)	948
PkrI	GCNGC	2 cut(s)	658, 1201
PleI	GAGTC	1 cut(s)	1164
PpsI	GAGTC	1 cut(s)	1164
Ppu21I	YACGTR	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	993
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	837, 860
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	4 cut(s)	207, 771, 1168, 1206
RsaNI	GTAC	4 cut(s)	206, 770, 1167, 1205
RseI	CAYNNNNRTG	3 cut(s)	26, 452, 932
SacI	GAGCTC	1 cut(s)	993
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	7 cut(s)	78, 201, 626, 819, 1091, 1139, 1212
SatI	GCNGC	2 cut(s)	657, 1200
Sau3AI	GATC	8 cut(s)	232, 259, 302, 556, 673, 868, 945, 955
Sau96I	GGNCC	2 cut(s)	837, 860
SchI	GAGTC	1 cut(s)	1165
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	1 cut(s)	993
SfaNI	GCATC	2 cut(s)	136, 973
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	3 cut(s)	26, 452, 932
SsiI	CCGC	2 cut(s)	858, 1085
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	5 cut(s)	95, 605, 750, 939, 959
SstI	GAGCTC	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	948
StyI	CCWWGG	2 cut(s)	526, 930
TaaI	ACNGT	2 cut(s)	112, 795
TaiI	ACGT	7 cut(s)	125, 582, 775, 1007, 1107, 1128, 1172
TaqI	TCGA	3 cut(s)	141, 849, 1113
TaqII	GACCGA	1 cut(s)	1219
Tru1I	TTAA	7 cut(s)	78, 201, 626, 819, 1091, 1139, 1212
Tru9I	TTAA	7 cut(s)	78, 201, 626, 819, 1091, 1139, 1212
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	3 cut(s)	106, 161, 539
TseI	GCWGC	2 cut(s)	656, 1199
Tsp45I	GTSAC	3 cut(s)	106, 161, 539
TspDTI	ATGAA	4 cut(s)	176, 243, 434, 480
TspRI	CASTG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	3 cut(s)	312, 565, 1080
XbaI	TCTAGA	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	5 cut(s)	95, 605, 750, 939, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.