Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

2027317 .. 2032008

Gene Structure 4692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G022600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCAAACTATGGTGATTGTTTGTCAACAGTGTGGTGACAGAGGCTTTGAAGATGCCTTAATCTACTGTGAACAGTGCCAGAATTATGCTATTCATCTTTATTGCCTTGATGTGCCCGCAGAAAATATTTTTGATGAAGATATTACTTGGCTTTGTGTGGATTGTGAACCAAAGATTATAAAGCCTTCTACAATTGATAAATCAGTAAGATCAACAAAAAATCATCATAACAAGAAGTTGAAGAAAAGGAGGAGGAAAAAGAATAGATTGACTTTTCCTAAATCTGTGGCTAAAAAGGCGCAGATATGTGAAGGGGATAAAATGATTTTACAGATACGTGAAGGTAGCCCTTGTGAACATGAGGCTGAGGGCAGTAATAATTGTGACAGTGGTCAGAATGTTGGTAATCCGTGCAGAGAAGTTCTTGAATATCAGTTCAATTCCTTCCATGACGTTCTCGAGTTTGTAAAAACCTCTCAAATTATTACTAGTGATGCTTTACAAATCATAGAACACAATTCTTATGTTGCTGCACAGCCTATCATTGATCCAATCTGGAGGGGAAGTCTAAGCATATTCAACAAAGACTTCAACATTGTTAGTGGACTTGTAGCCCATCTCTCTAGCCTAGCCTGTCCTAAAGTGCGCGAGGAGGCAGAACTGTTGCCGTTGCTGATTTTTCCAGAATTGGTTCGTAGGACTGATGTGTGGCCAAAAGCTTTTGAGAAGTTGGGGCCTAGTGACCGGAGTATCGCTCTTTACTTTTTTCCTGACAACGAAAGAGATGAGAAAGATTTTGACAGTCTCGTGGCTAGCATGATCCAGGATGATCTTGCTATGAAAGCCATTCTGGACAATGCTGAGCTTTTAGTTTTCACTTCGACTATACTGCCCGAGCAATATCAGAGGTTTCAGACAAAGATTTATTTATGGGGAGTATTTAGGGCAAAGAAATTTCCAGAATTAACAAATGGTAATGCTCCCGGTGGGGAGAAAGACGTTGCATTGCCCTTAACGTTAACCTGTTATGGGCAGAGTCCAGTTAGTACGTTGAGCAACAATGTAGATATTAGTTGTGATCCTGAACCACTCAATTCCTATTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.8

Weight (kDa)

5.33

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccII	CGCG	1 cut(s)	648
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	1016
AclWI	GGATC	3 cut(s)	542, 814, 1073
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	953
AfaI	GTAC	1 cut(s)	1048
AfiI	CCNNNNNNNGG	1 cut(s)	1029
AgsI	TTSAA	6 cut(s)	50, 241, 428, 439, 580, 592
AhlI	ACTAGT	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	822
AluBI	AGCT	2 cut(s)	719, 865
AluI	AGCT	2 cut(s)	719, 865
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	3 cut(s)	542, 814, 1073
Ama87I	CYCGRG	2 cut(s)	458, 893
AoxI	GGCC	2 cut(s)	710, 734
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	1 cut(s)	953
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	2 cut(s)	301, 648
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	1 cut(s)	984
AsuHPI	GGTGA	2 cut(s)	25, 47
AsuNHI	GCTAGC	1 cut(s)	812
AvaI	CYCGRG	2 cut(s)	458, 893
BaeGI	GKGCMC	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BalI	TGGCCA	1 cut(s)	712
BauI	CACGAG	1 cut(s)	806
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	517
BccI	CCATC	1 cut(s)	624
BceAI	ACGGC	1 cut(s)	652
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	1 cut(s)	824
BcnI	CCSGG	1 cut(s)	984
BcoDI	GTCTC	1 cut(s)	809
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	5 cut(s)	489, 624, 629, 738, 813
BisI	GCNGC	1 cut(s)	531
BlpI	GCTNAGC	1 cut(s)	861
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	824, 984
BmeT110I	CYCGRG	2 cut(s)	458, 893
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	2 cut(s)	824, 984
BmsI	GCATC	2 cut(s)	43, 484
BmtI	GCTAGC	1 cut(s)	816
BoxI	GACNNNNGTC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpmI	CTGGAG	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	861
BpuMI	CCSGG	1 cut(s)	984
BsaAI	YACGTR	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	744
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	1029
Bse1I	ACTGG	1 cut(s)	1040
Bse3DI	GCAATG	1 cut(s)	1004
BseBI	CCWGG	1 cut(s)	824
BseGI	GGATG	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	1029
BseMI	GCAATG	1 cut(s)	1004
BseMII	CTCAG	2 cut(s)	357, 852
BseNI	ACTGG	1 cut(s)	1040
BseRI	GAGGAG	2 cut(s)	265, 665
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	517
BsgI	GTGCAG	2 cut(s)	433, 516
Bsh1236I	CGCG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	712, 736
BsiHKCI	CYCGRG	2 cut(s)	458, 893
BsiSI	CCGG	2 cut(s)	745, 984
BslI	CCNNNNNNNGG	1 cut(s)	1029
BsmAI	GTCTC	1 cut(s)	809
BsnI	GGCC	2 cut(s)	712, 736
BsoBI	CYCGRG	2 cut(s)	458, 893
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	209, 547, 819, 829, 1078
Bsp1720I	GCTNAGC	1 cut(s)	861
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	712, 736
BspCNI	CTCAG	2 cut(s)	358, 853
BspFNI	CGCG	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	735
BspOI	GCTAGC	1 cut(s)	816
BspPI	GGATC	3 cut(s)	542, 814, 1073
BsrDI	GCAATG	1 cut(s)	1004
BsrI	ACTGG	1 cut(s)	1040
BssMI	GATC	5 cut(s)	209, 547, 819, 829, 1078
BssSI	CACGAG	1 cut(s)	806
Bst2BI	CACGAG	1 cut(s)	806
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	6 cut(s)	30, 68, 75, 389, 663, 803
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	117, 814
BstDEI	CTNAG	3 cut(s)	366, 569, 861
BstF5I	GGATG	1 cut(s)	832
BstFNI	CGCG	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	301, 648
BstKTI	GATC	5 cut(s)	212, 550, 822, 832, 1081
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	5 cut(s)	209, 547, 819, 829, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 842
BstNI	CCWGG	1 cut(s)	824
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	822, 982
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	712, 736
BtsCI	GGATG	1 cut(s)	832
BtsIMutI	CAGTG	3 cut(s)	35, 80, 394
Cac8I	GCNNGC	2 cut(s)	117, 814
CfoI	GCGC	2 cut(s)	301, 648
Cfr13I	GGNCC	1 cut(s)	734
Csp6I	GTAC	1 cut(s)	1047
CviAII	CATG	3 cut(s)	359, 449, 817
CviQI	GTAC	1 cut(s)	1047
DdeI	CTNAG	3 cut(s)	366, 569, 861
DpnI	GATC	5 cut(s)	211, 549, 821, 831, 1080
DpnII	GATC	5 cut(s)	209, 547, 819, 829, 1078
EaeI	YGGCCR	1 cut(s)	710
Eco88I	CYCGRG	2 cut(s)	458, 893
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	822
FaeI	CATG	3 cut(s)	362, 452, 820
FatI	CATG	3 cut(s)	358, 448, 816
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	1 cut(s)	839
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	5 cut(s)	489, 624, 629, 738, 813
GlaI	GCGC	2 cut(s)	300, 647
GluI	GCNGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	712, 736
HapII	CCGG	2 cut(s)	745, 984
HhaI	GCGC	2 cut(s)	301, 648
Hin1II	CATG	3 cut(s)	362, 452, 820
Hin6I	GCGC	2 cut(s)	299, 646
HinP1I	GCGC	2 cut(s)	299, 646
HincII	GTYRAC	2 cut(s)	26, 1020
HindII	GTYRAC	2 cut(s)	26, 1020
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	1 cut(s)	1036
HpaI	GTTAAC	1 cut(s)	1020
HpaII	CCGG	2 cut(s)	745, 984
HphI	GGTGA	2 cut(s)	25, 47
Hpy166II	GTNNAC	6 cut(s)	26, 71, 167, 356, 605, 1020
Hpy188I	TCNGA	3 cut(s)	396, 906, 915
Hpy188III	TCNNGA	8 cut(s)	425, 458, 556, 683, 770, 851, 959, 1082
Hpy8I	GTNNAC	6 cut(s)	26, 71, 167, 356, 605, 1020
HpyAV	CCTTC	4 cut(s)	195, 305, 335, 454
HpyCH4III	ACNGT	6 cut(s)	30, 68, 75, 389, 663, 803
HpyCH4IV	ACGT	5 cut(s)	337, 453, 999, 1016, 1049
HpyCH4V	TGCA	4 cut(s)	4, 414, 533, 1004
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 842
HpyF3I	CTNAG	3 cut(s)	366, 569, 861
HpySE526I	ACGT	5 cut(s)	337, 453, 999, 1016, 1049
Hsp92II	CATG	3 cut(s)	362, 452, 820
HspAI	GCGC	2 cut(s)	299, 646
KspAI	GTTAAC	1 cut(s)	1020
Kzo9I	GATC	5 cut(s)	209, 547, 819, 829, 1078
LmnI	GCTCC	1 cut(s)	985
Lsp1109I	GCAGC	1 cut(s)	517
LweI	GCATC	2 cut(s)	43, 484
MaeI	CTAG	5 cut(s)	489, 624, 629, 738, 813
MaeII	ACGT	5 cut(s)	337, 453, 999, 1016, 1049
MaeIII	GTNAC	3 cut(s)	35, 383, 740
MalI	GATC	5 cut(s)	211, 549, 821, 831, 1080
MboI	GATC	5 cut(s)	209, 547, 819, 829, 1078
MboII	GAAGA	3 cut(s)	62, 149, 253
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	712
MluNI	TGGCCA	1 cut(s)	712
MlyI	GAGTC	1 cut(s)	1045
Mox20I	TGGCCA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	5 cut(s)	59, 965, 1013, 1019, 1108
Msp20I	TGGCCA	1 cut(s)	712
MspI	CCGG	2 cut(s)	745, 984
MspR9I	CCNGG	2 cut(s)	824, 984
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	824
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	2 cut(s)	296, 842
NciI	CCSGG	1 cut(s)	984
NdeII	GATC	5 cut(s)	209, 547, 819, 829, 1078
NheI	GCTAGC	1 cut(s)	812
NlaIII	CATG	3 cut(s)	362, 452, 820
NlaIV	GGNNCC	1 cut(s)	735
NmuCI	GTSAC	3 cut(s)	35, 383, 740
PaeR7I	CTCGAG	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	690
PfoI	TCCNGGA	1 cut(s)	822
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	1 cut(s)	1044
PpsI	GAGTC	1 cut(s)	1044
Ppu21I	YACGTR	1 cut(s)	338
PshAI	GACNNNNGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	822
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	734
RsaI	GTAC	1 cut(s)	1048
RsaNI	GTAC	1 cut(s)	1047
SaqAI	TTAA	5 cut(s)	59, 965, 1013, 1019, 1108
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	5 cut(s)	209, 547, 819, 829, 1078
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	1 cut(s)	1045
ScrFI	CCNGG	2 cut(s)	824, 984
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	43, 484
Sfr274I	CTCGAG	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SpeI	ACTAGT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	5 cut(s)	489, 624, 629, 738, 813
StyD4I	CCNGG	2 cut(s)	822, 982
TaaI	ACNGT	6 cut(s)	30, 68, 75, 389, 663, 803
TaiI	ACGT	5 cut(s)	340, 456, 1002, 1019, 1052
TaqI	TCGA	2 cut(s)	459, 881
Tru1I	TTAA	5 cut(s)	59, 965, 1013, 1019, 1108
Tru9I	TTAA	5 cut(s)	59, 965, 1013, 1019, 1108
TscAI	CASTG	3 cut(s)	35, 80, 394
TseFI	GTSAC	3 cut(s)	35, 383, 740
TseI	GCWGC	1 cut(s)	530
Tsp45I	GTSAC	3 cut(s)	35, 383, 740
TspDTI	ATGAA	3 cut(s)	83, 150, 854
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	3 cut(s)	35, 80, 394
XapI	RAATTY	1 cut(s)	953
XhoI	CTCGAG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	5 cut(s)	489, 624, 629, 738, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.