Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Reverse (-)

1338774 .. 1340564

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCTAACATTGATTCTGATGTACTGGTTGCAGGTGACTGTGTGTCAAACGTGTGGCGACAGAGGTATCGAAGATGCTTTGCTTTTCTGTGACAAGTGCCAAAATTATGCTCTTCATCGTTATTGCCTTAATGTACCAGCAGAAAATATTTTTGATGAAGATCTGACTTGGCTTTGTGAGGATTGTGATCCAAAGATTGTAAAGCCCTGTAGAATTGATAAATCAGTAAGATCAATGGAAATTTGTCTTAACAAGAAGTTCCAGAAGAGGAGGAAGAAGAAGAGTAAAAGAAAGACTTTACCTATATACGGGGCTAAAAAGAAGGTGCGGAAATGTGCAGGGGCGAACATGAAGGTGCAGATATGTGAAGGGGCTAACAGGAAGGCGCAGATACATGAAGGTAGTCCCTCTGAACATGAGGCCGAGGGTAGTAATGATTGTGATAATGGTCAGAAGCTCGGTAGTCAGTGCGATGAGGTTCATGAGGATCAACTGATTTCCTCGAATGACGTTGCCAAATCTGTAGAAGCCTCTCTAGTTACTACTTCTGACCCTTTAAATACCTCAGAAATAATATGTTATGTTGCTGCACAGCCTATTATTGATCCAATCTGGAGAGGAAGCCTCAGCATATTCAACAAAGACTTCAACATTGTTAGTGGACTTGTAGCCCATCTCTCTAGCTTAGCCTGTCCAAAGGTACGTGAGGAGGCAGAATTGCTACCGTTACTGCTTTTTCCAGAATTGGTTAATAGAACAGATGTGTGGCCCAAAGCTTTTGAGAAGTGCGGACCTAACGATCAGAGTATTGCTCTTTATTTCTTTTCTGATAACGAAAGAGATGAGAAGGATTTTGACACCATGGTGGCTAGCATGATCCAGGATGATCTAGCTATGAGAGCTGTGCTGGACGATGCTGAGCTCTTAGTTTTCACGTCAGTCATACTGCCAGAGCAGTATCGGAGATTTCAGGCAAAGTTTTATTTGTGGGGAGTATTTAGGGCAAAGCAATTTCCGCAGTTAACAAATAATAACGTCGGGGCCGGGGAGAATGACGTTGCAAAGCCGTTAACCTGTTATGGGCAGAGTCCAGTTAGTACGTTGAGCAACGATGTAGAAATTACTTGTGCTGCTGTACCTCTTAATTCCTATTGTGATTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

43.62

Weight (kDa)

5.28

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AciI	CCGC	3 cut(s)	328, 789, 1016
AclWI	GGATC	4 cut(s)	182, 495, 599, 871
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	5 cut(s)	23, 135, 702, 1099, 1137
AfiI	CCNNNNNNNGG	2 cut(s)	308, 1080
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	637, 649
AhdI	GACNNNNNGTC	1 cut(s)	42
AjiI	CACGTC	1 cut(s)	936
AjnI	CCWGG	1 cut(s)	879
AleI	CACNNNNGTG	1 cut(s)	863
AluBI	AGCT	6 cut(s)	457, 684, 776, 893, 902, 922
AluI	AGCT	6 cut(s)	457, 684, 776, 893, 902, 922
Alw21I	GWGCWC	1 cut(s)	924
AlwI	GGATC	4 cut(s)	182, 495, 599, 871
AoxI	GGCC	3 cut(s)	420, 767, 1041
ApeKI	GCWGC	2 cut(s)	587, 1130
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	768, 791, 1041
AsuC2I	CCSGG	1 cut(s)	1045
AsuHPI	GGTGA	1 cut(s)	46
AsuNHI	GCTAGC	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	791
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanII	GRGCYC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	924
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	2 cut(s)	574, 1117
BccI	CCATC	1 cut(s)	681
BceAI	ACGGC	1 cut(s)	1051
BciT130I	CCWGG	1 cut(s)	881
BcnI	CCSGG	1 cut(s)	1045
BfaI	CTAG	4 cut(s)	536, 681, 870, 890
BfmI	CTRYAG	2 cut(s)	208, 522
BfuAI	ACCTGC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	2 cut(s)	588, 1131
BlpI	GCTNAGC	2 cut(s)	685, 918
BlsI	GCNGC	2 cut(s)	589, 1132
Bme1390I	CCNGG	2 cut(s)	881, 1045
Bme18I	GGWCC	1 cut(s)	791
BmeRI	GACNNNNNGTC	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	936
BmgT120I	GGNCC	3 cut(s)	768, 791, 1041
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	2 cut(s)	881, 1045
BmsI	GCATC	2 cut(s)	64, 904
BmtI	GCTAGC	1 cut(s)	873
BplI	GAGNNNNNCTC	4 cut(s)	609, 641, 796, 828
BpmI	CTGGAG	1 cut(s)	634
Bpu10I	CCTNAGC	1 cut(s)	626
Bpu1102I	GCTNAGC	2 cut(s)	685, 918
BpuMI	CCSGG	1 cut(s)	1045
BsaAI	YACGTR	1 cut(s)	704
BsaBI	GATNNNNATC	2 cut(s)	159, 186
BsaJI	CCNNGG	3 cut(s)	423, 861, 1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 1080
Bse1I	ACTGG	2 cut(s)	29, 1091
Bse8I	GATNNNNATC	2 cut(s)	159, 186
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	3 cut(s)	423, 861, 1044
BseGI	GGATG	1 cut(s)	889
BseJI	GATNNNNATC	2 cut(s)	159, 186
BseLI	CCNNNNNNNGG	2 cut(s)	308, 1080
BseMII	CTCAG	3 cut(s)	579, 640, 909
BseNI	ACTGG	2 cut(s)	29, 1091
BseRI	GAGGAG	2 cut(s)	283, 722
BseXI	GCAGC	2 cut(s)	574, 1117
BsgI	GTGCAG	3 cut(s)	357, 377, 573
BshFI	GGCC	3 cut(s)	422, 769, 1043
BsiHKAI	GWGCWC	1 cut(s)	924
BsiSI	CCGG	1 cut(s)	1044
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	308, 1080
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	422, 769, 1043
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
Bsp1720I	GCTNAGC	2 cut(s)	685, 918
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	3 cut(s)	328, 789, 1016
BspANI	GGCC	3 cut(s)	422, 769, 1043
BspCNI	CTCAG	3 cut(s)	578, 639, 910
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	1042
BspMI	ACCTGC	1 cut(s)	22
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	4 cut(s)	182, 495, 599, 871
BspQI	GCTCTTC	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	29, 1091
BssECI	CCNNGG	3 cut(s)	423, 861, 1044
BssMI	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	2 cut(s)	40, 726
Bst6I	CTCTTC	3 cut(s)	117, 260, 275
BstBAI	YACGTR	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	5 cut(s)	565, 626, 685, 918, 925
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	1 cut(s)	889
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	8 cut(s)	163, 190, 233, 490, 607, 802, 879, 889
BstMBI	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
BstMWI	GCNNNNNNNGC	2 cut(s)	899, 1015
BstNI	CCWGG	1 cut(s)	881
BstSCI	CCNGG	2 cut(s)	879, 1043
BstSFI	CTRYAG	2 cut(s)	208, 522
BstV1I	GCAGC	2 cut(s)	574, 1117
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	422, 769, 1043
BtgI	CCRYGG	1 cut(s)	861
BtgZI	GCGATG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	936
BtsCI	GGATG	1 cut(s)	889
BtsIMutI	CAGTG	1 cut(s)	473
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	871
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	768, 791, 1041
Csp6I	GTAC	5 cut(s)	22, 134, 701, 1098, 1136
CviAII	CATG	6 cut(s)	349, 395, 416, 482, 862, 874
CviQI	GTAC	5 cut(s)	22, 134, 701, 1098, 1136
DdeI	CTNAG	5 cut(s)	565, 626, 685, 918, 925
DpnI	GATC	8 cut(s)	162, 189, 232, 489, 606, 801, 878, 888
DpnII	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
DraI	TTTAAA	1 cut(s)	558
DriI	GACNNNNNGTC	1 cut(s)	42
Eam1104I	CTCTTC	3 cut(s)	117, 260, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	42
EarI	CTCTTC	3 cut(s)	117, 260, 275
Ecl136II	GAGCTC	1 cut(s)	922
Eco130I	CCWWGG	1 cut(s)	861
Eco24I	GRGCYC	1 cut(s)	924
Eco47I	GGWCC	1 cut(s)	791
Eco53kI	GAGCTC	1 cut(s)	922
EcoICRI	GAGCTC	1 cut(s)	922
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	861
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	6 cut(s)	352, 398, 419, 485, 865, 877
FalI	AAGNNNNNCTT	2 cut(s)	280, 312
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	6 cut(s)	348, 394, 415, 481, 861, 873
Fnu4HI	GCNGC	2 cut(s)	588, 1131
FokI	GGATG	1 cut(s)	896
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	2 cut(s)	588, 1131
FspBI	CTAG	4 cut(s)	536, 681, 870, 890
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	2 cut(s)	588, 1131
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	422, 769, 1043
HapII	CCGG	1 cut(s)	1044
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	6 cut(s)	352, 398, 419, 485, 865, 877
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	2 cut(s)	1023, 1071
HindII	GTYRAC	2 cut(s)	1023, 1071
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	2 cut(s)	13, 1087
HpaI	GTTAAC	2 cut(s)	1023, 1071
HpaII	CCGG	1 cut(s)	1044
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	662, 1023, 1071
Hpy188I	TCNGA	9 cut(s)	18, 165, 412, 453, 550, 568, 804, 829, 963
Hpy188III	TCNNGA	4 cut(s)	262, 482, 613, 740
Hpy8I	GTNNAC	3 cut(s)	662, 1023, 1071
Hpy99I	CGWCG	1 cut(s)	1040
HpyAV	CCTTC	6 cut(s)	316, 346, 362, 376, 392, 841
HpyCH4III	ACNGT	2 cut(s)	40, 726
HpyCH4IV	ACGT	7 cut(s)	50, 510, 703, 935, 1035, 1056, 1100
HpyCH4V	TGCA	5 cut(s)	31, 338, 358, 590, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	899, 1015
HpyF3I	CTNAG	5 cut(s)	565, 626, 685, 918, 925
HpySE526I	ACGT	7 cut(s)	50, 510, 703, 935, 1035, 1056, 1100
Hsp92II	CATG	6 cut(s)	352, 398, 419, 485, 865, 877
HspAI	GCGC	1 cut(s)	386
KspAI	GTTAAC	2 cut(s)	1023, 1071
Kzo9I	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
LguI	GCTCTTC	1 cut(s)	117
Lsp1109I	GCAGC	2 cut(s)	574, 1117
LweI	GCATC	2 cut(s)	64, 904
MaeI	CTAG	4 cut(s)	536, 681, 870, 890
MaeII	ACGT	7 cut(s)	50, 510, 703, 935, 1035, 1056, 1100
MaeIII	GTNAC	4 cut(s)	34, 89, 538, 726
MalI	GATC	8 cut(s)	162, 189, 232, 489, 606, 801, 878, 888
MboI	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
MboII	GAAGA	7 cut(s)	83, 104, 170, 277, 286, 289, 292
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	924
MluCI	AATT	8 cut(s)	103, 213, 240, 716, 743, 1010, 1119, 1144
MlyI	GAGTC	1 cut(s)	1096
MseI	TTAA	7 cut(s)	129, 249, 557, 750, 1022, 1070, 1143
MslI	CAYNNNNRTG	2 cut(s)	353, 863
MspI	CCGG	1 cut(s)	1044
MspR9I	CCNGG	2 cut(s)	881, 1045
MvaI	CCWGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	899, 1015
NciI	CCSGG	1 cut(s)	1045
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	6 cut(s)	352, 398, 419, 485, 865, 877
NlaIV	GGNNCC	1 cut(s)	1042
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	34, 89
OliI	CACNNNNGTG	1 cut(s)	863
PagI	TCATGA	1 cut(s)	481
PaqCI	CACCTGC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	13
PfoI	TCCNGGA	1 cut(s)	879
PkrI	GCNGC	2 cut(s)	589, 1132
PleI	GAGTC	1 cut(s)	1095
PpsI	GAGTC	1 cut(s)	1095
Ppu21I	YACGTR	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	3 cut(s)	768, 791, 1041
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	5 cut(s)	23, 135, 702, 1099, 1137
RsaNI	GTAC	5 cut(s)	22, 134, 701, 1098, 1136
RseI	CAYNNNNRTG	2 cut(s)	353, 863
SacI	GAGCTC	1 cut(s)	924
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	7 cut(s)	129, 249, 557, 750, 1022, 1070, 1143
SatI	GCNGC	2 cut(s)	588, 1131
Sau3AI	GATC	8 cut(s)	160, 187, 230, 487, 604, 799, 876, 886
Sau96I	GGNCC	3 cut(s)	768, 791, 1041
SchI	GAGTC	1 cut(s)	1096
ScrFI	CCNGG	2 cut(s)	881, 1045
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	2 cut(s)	64, 904
SfcI	CTRYAG	2 cut(s)	208, 522
SinI	GGWCC	1 cut(s)	791
SmiMI	CAYNNNNRTG	2 cut(s)	353, 863
Sse9I	AATT	8 cut(s)	103, 213, 240, 716, 743, 1010, 1119, 1144
SsiI	CCGC	3 cut(s)	328, 789, 1016
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	4 cut(s)	536, 681, 870, 890
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	879, 1043
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	40, 726
TaiI	ACGT	7 cut(s)	53, 513, 706, 938, 1038, 1059, 1103
TaqI	TCGA	2 cut(s)	69, 503
TasI	AATT	8 cut(s)	103, 213, 240, 716, 743, 1010, 1119, 1144
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	7 cut(s)	129, 249, 557, 750, 1022, 1070, 1143
Tru9I	TTAA	7 cut(s)	129, 249, 557, 750, 1022, 1070, 1143
TscAI	CASTG	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	34, 89
TseI	GCWGC	2 cut(s)	587, 1130
Tsp45I	GTSAC	2 cut(s)	34, 89
TspDTI	ATGAA	5 cut(s)	104, 171, 365, 411, 470
TspRI	CASTG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	4 cut(s)	536, 681, 870, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.