Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Forward (+)

2451093 .. 2452401

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGATATTAGAAACACTTGCCTAGCTTGTGGTAGTGGAGCCTTTAGGGGAGTTCTGGTCTACTGTAGTAAGTGCAAGGAGTATGCACAGCATGGATATTGCCTTGGAGTGTCAATAGACGAGTATGTTCGTCGTGGGCGTATTTGGTACTGTGAAGATTGCCAAGAGGTGAAGCCAGCTGCCTCTTTTTCCACTCATGATCTCGATGAATGTGAATCCGTGGATACCGGAGAAGTGCTGCAAAGCACTCCTCCTTCTGCCGGGACAAGTAGTACCCCTGATGGTACCAACAAGAACTTGAAGGCCAAGAACACCAAGAAGCTGAAAAAGAAGAGTAAGAAGAAGAAATCCAATCAATCTGGATTTGTGGTTAAAAGTGTATTAGAGACAATACTTGAAGGTAATGAAGAGGCTGAAGATGAGGGCGCCGAAATCAATTGTGATGATGGTCACAAGCTTGGTAATGATCAAGAAGGCAATGGTCTTGAAAAAGATCAATTTGATGCCTCCGATGACACCATGGAAATAGATGAAGATGGCGATTCTACTCATGTTGCTGCTCAACCGGTTGCTATTCCAACTTGGAGGGGAAGCCTAAACATATTGAACAAAGTTAACTACAAGAACTTGAGAAATGAAACTATTAGTGGACTTGCTGCTCATCTCTCAAGCATAGCCTGCGCTAAAGTGTTGGAGGAGTCGAAATTTCTGAAGACACAGCTTGTCCCAGATTTGGTTCGTAGGACGGATGTGTGGCCAAAAGGTTATGACATGTGTGGAACTAGTGATCGGAGTATTGCTCTTTATTTTTTCCCTGACAGCGAAACAGATGAGAAGGATTTCAACAACTTGATGGGTAGCATGATGCAGGAGGATCTCGCTATGAGAGTTGATGTCGAAAAAGCTGAGCTTTTGGTTTTCACTTCAAGCATGTTACCCAAGAAATATCAAAGAGTTAAGTCAAAGATGTATCTGTGGGGAGTCTTCAAGGAAAAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

37.15

Weight (kDa)

5.21

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	7 - 54	3.5e-06	PHD-finger
SPOC_AIPP2	PF23121	195 - 329	5.6e-42	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	284, 425
AccI	GTMKAC	1 cut(s)	60
AclWI	GGATC	1 cut(s)	882
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	435, 731
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	3 cut(s)	149, 274, 286
AfiI	CCNNNNNNNGG	2 cut(s)	260, 733
AflIII	ACRYGT	1 cut(s)	771
AgeI	ACCGGT	1 cut(s)	565
AgsI	TTSAA	7 cut(s)	301, 398, 488, 607, 844, 927, 988
AhlI	ACTAGT	1 cut(s)	782
AluBI	AGCT	7 cut(s)	26, 179, 322, 457, 721, 905, 910
AluI	AGCT	7 cut(s)	26, 179, 322, 457, 721, 905, 910
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	882
AoxI	GGCC	2 cut(s)	303, 755
ApeKI	GCWGC	4 cut(s)	179, 238, 557, 656
ApoI	RAATTY	1 cut(s)	704
AsiGI	ACCGGT	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	839
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	428, 683
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	757
BanI	GGYRCC	2 cut(s)	284, 425
BbsI	GAAGAC	2 cut(s)	719, 976
BbvI	GCAGC	4 cut(s)	166, 225, 544, 643
BccI	CCATC	4 cut(s)	275, 440, 530, 847
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	380
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	2 cut(s)	23, 783
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	180, 239, 558, 657
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	4 cut(s)	181, 240, 559, 658
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	40, 286, 427
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	493, 855
BpiI	GAAGAC	2 cut(s)	719, 976
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	649, 652
BpuMI	CCSGG	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	103, 219, 519
BsaWI	WCCGGW	2 cut(s)	227, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 733
Bse118I	RCCGGY	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	484
BseDI	CCNNGG	3 cut(s)	103, 219, 519
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	2 cut(s)	260, 733
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	1 cut(s)	897
BseRI	GAGGAG	2 cut(s)	240, 710
BseXI	GCAGC	4 cut(s)	166, 225, 544, 643
BshFI	GGCC	2 cut(s)	305, 757
BshNI	GGYRCC	2 cut(s)	284, 425
BshTI	ACCGGT	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	228, 261, 566
BslFI	GGGAC	2 cut(s)	277, 710
BslI	CCNNNNNNNGG	2 cut(s)	260, 733
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	277, 710
BsnI	GGCC	2 cut(s)	305, 757
Bsp143I	GATC	5 cut(s)	199, 466, 493, 787, 874
Bsp1720I	GCTNAGC	1 cut(s)	906
Bsp19I	CCATGG	1 cut(s)	519
BspANI	GGCC	2 cut(s)	305, 757
BspCNI	CTCAG	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	40, 286, 427
BspPI	GGATC	1 cut(s)	882
BspT107I	GGYRCC	2 cut(s)	284, 425
BsrDI	GCAATG	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	3 cut(s)	103, 219, 519
BssMI	GATC	5 cut(s)	199, 466, 493, 787, 874
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	2 cut(s)	103, 519
Bst4CI	ACNGT	2 cut(s)	65, 152
Bst6I	CTCTTC	2 cut(s)	326, 402
BstACI	GRCGYC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	678
BstC8I	GCNNGC	2 cut(s)	177, 679
BstDEI	CTNAG	1 cut(s)	906
BstDSI	CCRYGG	2 cut(s)	219, 519
BstF5I	GGATG	1 cut(s)	754
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	2 cut(s)	428, 683
BstKTI	GATC	5 cut(s)	202, 469, 496, 790, 877
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	5 cut(s)	199, 466, 493, 787, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	678
BstNSI	RCATGY	2 cut(s)	775, 934
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	4 cut(s)	166, 225, 544, 643
BstV2I	GAAGAC	2 cut(s)	719, 976
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	305, 757
BtgI	CCRYGG	2 cut(s)	219, 519
BtsCI	GGATG	1 cut(s)	754
Cac8I	GCNNGC	2 cut(s)	177, 679
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	428, 683
Cfr10I	RCCGGY	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	148, 273, 285
CspAI	ACCGGT	1 cut(s)	565
CviAII	CATG	7 cut(s)	92, 197, 520, 551, 772, 862, 931
CviQI	GTAC	3 cut(s)	148, 273, 285
DdeI	CTNAG	1 cut(s)	906
DinI	GGCGCC	1 cut(s)	427
DpnI	GATC	5 cut(s)	201, 468, 495, 789, 876
DpnII	GATC	5 cut(s)	199, 466, 493, 787, 874
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	2 cut(s)	326, 402
EarI	CTCTTC	2 cut(s)	326, 402
Eco130I	CCWWGG	2 cut(s)	103, 519
Eco57I	CTGAAG	2 cut(s)	435, 731
EcoT14I	CCWWGG	2 cut(s)	103, 519
EgeI	GGCGCC	1 cut(s)	427
EheI	GGCGCC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	103, 519
FaeI	CATG	7 cut(s)	95, 200, 523, 554, 775, 865, 934
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FaqI	GGGAC	2 cut(s)	277, 710
FatI	CATG	7 cut(s)	91, 196, 519, 550, 771, 861, 930
FbaI	TGATCA	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	180, 239, 558, 657
FokI	GGATG	1 cut(s)	761
Fsp4HI	GCNGC	4 cut(s)	180, 239, 558, 657
FspBI	CTAG	2 cut(s)	23, 783
GlaI	GCGC	2 cut(s)	427, 682
GluI	GCNGC	4 cut(s)	180, 239, 558, 657
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	305, 757
HapII	CCGG	3 cut(s)	228, 261, 566
HhaI	GCGC	2 cut(s)	428, 683
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	7 cut(s)	95, 200, 523, 554, 775, 865, 934
Hin6I	GCGC	2 cut(s)	426, 681
HinP1I	GCGC	2 cut(s)	426, 681
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	4 cut(s)	215, 542, 698, 981
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	3 cut(s)	228, 261, 566
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	61, 616, 650
Hpy188I	TCNGA	3 cut(s)	511, 711, 792
Hpy188III	TCNNGA	5 cut(s)	197, 203, 360, 470, 485
Hpy8I	GTNNAC	3 cut(s)	61, 616, 650
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	5 cut(s)	264, 295, 392, 467, 829
HpyCH4III	ACNGT	2 cut(s)	65, 152
HpyCH4V	TGCA	4 cut(s)	75, 86, 241, 868
HpyF10VI	GCNNNNNNNGC	1 cut(s)	678
HpyF3I	CTNAG	1 cut(s)	906
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	7 cut(s)	95, 200, 523, 554, 775, 865, 934
HspAI	GCGC	2 cut(s)	426, 681
KasI	GGCGCC	1 cut(s)	425
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	466
KspAI	GTTAAC	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	199, 466, 493, 787, 874
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	4 cut(s)	166, 225, 544, 643
LweI	GCATC	2 cut(s)	493, 855
MaeI	CTAG	2 cut(s)	23, 783
MaeIII	GTNAC	2 cut(s)	449, 933
MalI	GATC	5 cut(s)	201, 468, 495, 789, 876
MboI	GATC	5 cut(s)	199, 466, 493, 787, 874
MboII	GAAGA	9 cut(s)	167, 343, 352, 355, 419, 428, 545, 724, 976
MfeI	CAATTG	1 cut(s)	436
MflI	RGATCY	1 cut(s)	874
MlsI	TGGCCA	1 cut(s)	757
MluCI	AATT	3 cut(s)	436, 497, 704
MluNI	TGGCCA	1 cut(s)	757
Mly113I	GGCGCC	1 cut(s)	426
MlyI	GAGTC	2 cut(s)	707, 990
MmeI	TCCRAC	2 cut(s)	602, 672
MnlI	CCTC	9 cut(s)	160, 193, 261, 403, 415, 517, 579, 688, 865
Mox20I	TGGCCA	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	1 cut(s)	757
MseI	TTAA	4 cut(s)	372, 615, 957, 1000
Msp20I	TGGCCA	1 cut(s)	757
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	3 cut(s)	228, 261, 566
MspR9I	CCNGG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	678
NarI	GGCGCC	1 cut(s)	426
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	5 cut(s)	199, 466, 493, 787, 874
NlaIII	CATG	7 cut(s)	95, 200, 523, 554, 775, 865, 934
NlaIV	GGNNCC	3 cut(s)	40, 286, 427
NmuCI	GTSAC	1 cut(s)	449
NspI	RCATGY	2 cut(s)	775, 934
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	215, 542
PinAI	ACCGGT	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	181, 240, 559, 658
PleI	GAGTC	2 cut(s)	706, 989
PluTI	GGCGCC	1 cut(s)	429
PpsI	GAGTC	2 cut(s)	706, 989
PscI	ACATGT	1 cut(s)	771
PspN4I	GGNNCC	3 cut(s)	40, 286, 427
PsuI	RGATCY	1 cut(s)	874
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	3 cut(s)	149, 274, 286
RsaNI	GTAC	3 cut(s)	148, 273, 285
SaqAI	TTAA	4 cut(s)	372, 615, 957, 1000
SatI	GCNGC	4 cut(s)	180, 239, 558, 657
Sau3AI	GATC	5 cut(s)	199, 466, 493, 787, 874
SchI	GAGTC	2 cut(s)	707, 990
ScrFI	CCNGG	1 cut(s)	262
SfaNI	GCATC	2 cut(s)	493, 855
SfcI	CTRYAG	1 cut(s)	64
SfoI	GGCGCC	1 cut(s)	427
SmlI	CTYRAG	2 cut(s)	628, 667
SmoI	CTYRAG	2 cut(s)	628, 667
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	3 cut(s)	436, 497, 704
SspDI	GGCGCC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	23, 783
StyD4I	CCNGG	1 cut(s)	260
StyI	CCWWGG	2 cut(s)	103, 519
TaaI	ACNGT	2 cut(s)	65, 152
TaqI	TCGA	3 cut(s)	204, 701, 897
TasI	AATT	3 cut(s)	436, 497, 704
TfiI	GAWTC	2 cut(s)	215, 542
Tru1I	TTAA	4 cut(s)	372, 615, 957, 1000
Tru9I	TTAA	4 cut(s)	372, 615, 957, 1000
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	4 cut(s)	179, 238, 557, 656
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	4 cut(s)	222, 420, 546, 651
TspGWI	ACGGA	2 cut(s)	208, 761
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	2 cut(s)	775, 934
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	23, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.