Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002389

Physical Location & Seq

Genomic Coordinates Forward (+)

33169593 .. 33173672

Gene Structure 4080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTAACTGTCTGTCTAACTTGTGGGGATAGAGGCTTCAATAAGGTTATGGTAAACTGTCCAAAGTGTCAAGATAGTCGGCAACATATTTATTGCCTCGACGTGACACCAGAAAAATATTCTGAGAAAGATTTTACTTGGGTTTGTGACGAGTGTAAACCAGTCTCTATCCCTTCGAAAAGTCATCATAATCAAAACTCTAAGAAGAAGAAGAGGAAGAAGGTGAAAAAGACGAGTAATAGAAAGAAATTCACTGGGTCTGTGGCTAAAACGAAGGTTCAGATATGTGAAGGTAGCCCTCCTGAACACGAGGCTAAGGGCAGTGAAAATTGTGATAATCTTCTAAAGATTGGTAGTCGGTCGGGACAGGTTCTTGAAGATCAGGTCAATTCCTCCCATGATCTGGCTGCATCTATAAAGACCCCTCAAATTGCTGCTAGTGACCCTTTGAAAATCAATGAAGACTGTTATGTTGCTGCACAGCCTATTATTGATCCAACTTGGAGGGGAAGTCTAAGCATAATGAACAAAGACTTCAGCATCATTAGTGGACTTGTAGCCCATCTTTCAAGCTTGGCATGTGCTAAAGTGTTTGAAGAGGCGAAATTGCTACCAATGCTGCTGTTTCCAGATTTGGTTTGTAGGGTTGATGTATGGCCAAAGGCGTTTGAGAGCTGCGGACCAAGTGATCAGAGTATTGCTCTTTATTTTTTTCCTGACAGCAAAAGTAATGAGAAGGATTTTGATAACCTAGTGGTTAGCATGATTCAAGAGGATCTTGCTATGAGGGCAGTGCTGGATAACGCTGAGCTTTTAGTTTTCACTTCAAGTGTACTGCCCAAGCAGTTTCAGAGATTCCAGACAAAGCTTTATTTGTGGGGTGCATTTAGGGGGAAGCAGTCTTCCCCATTAACAAATGATAATGCCCCCAGAGGTGAGAAAGACCTCACAAAGCCCTTAACCTGTTGCACAGAGAGTCCAGTTAGTCCGTTGAGCAACAATGTGGACTGTCGTTCTGAATCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.06

Weight (kDa)

8.25

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_pln	PF25054	8 - 52	7.2e-06	PHD-type zinc finger
SPOC_AIPP2	PF23121	168 - 296	1.7e-45	AIPP2, SPOC-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43770 AT1G43770 AT1G43770
fragaria_vesca	FvH4_2g14350 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_3g26810 FvH4_6g03141
malus_domestica	MD05G1018500.v1.1 MD10G1018200.v1.1
prunus_persica	Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1 Prupe.8G022600_v2.0.a1
pyrus_communis	pycom05g01100 pycom10g01220
rosa_chinensis	RchiOBHm_Chr3g0451401 RchiOBHm_Chr6g0276691
rosa_laevigata	RLG00000013378 RLG00000025662
rosa_multiflora	Rmu_sc0000441.1_g000026 Rmu_sc0002575.1_g000003 Rmu_sc0021369.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436520 Rroxscaffold_6G00428820 Rroxscaffold_7G00192110
rosa_rugosa	Rorug02G0633600 Rorug06G0103000
rosa_samantha	Rh3AG036600 Rh3BG037200 Rh3CG035800 Rh3DG036700 Rh6AG213200 Rh6BG218200 Rh6CG220700 Rh6DG210800
rosa_wichuraiana	Rw3G002700 Rw6G018650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	403
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	2 cut(s)	488, 783
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	1 cut(s)	834
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	7 cut(s)	40, 377, 451, 570, 596, 770, 828
AjiI	CACGTC	1 cut(s)	103
AluBI	AGCT	4 cut(s)	573, 675, 811, 868
AluI	AGCT	4 cut(s)	573, 675, 811, 868
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	488, 783
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	5 cut(s)	407, 434, 476, 619, 675
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	2 cut(s)	235, 947
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	680
BalI	TGGCCA	1 cut(s)	658
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	2 cut(s)	468, 894
BbvI	GCAGC	5 cut(s)	394, 421, 463, 606, 662
BccI	CCATC	1 cut(s)	570
BclI	TGATCA	1 cut(s)	688
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	438, 752
BisI	GCNGC	5 cut(s)	408, 435, 477, 620, 676
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	5 cut(s)	409, 436, 478, 621, 677
Bme18I	GGWCC	1 cut(s)	680
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	2 cut(s)	419, 549
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	2 cut(s)	468, 894
BplI	GAGNNNNNCTC	2 cut(s)	685, 717
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	3 cut(s)	161, 259, 980
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	114, 798
BseNI	ACTGG	3 cut(s)	161, 259, 980
BseXI	GCAGC	5 cut(s)	394, 421, 463, 606, 662
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	658
BsiEI	CGRYCG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	658
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	379, 400, 493, 688, 775
Bsp1720I	GCTNAGC	1 cut(s)	807
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	115, 799
BspPI	GGATC	2 cut(s)	488, 783
BspT104I	TTCGAA	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	161, 259, 980
BssMI	GATC	5 cut(s)	379, 400, 493, 688, 775
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	4 cut(s)	10, 59, 467, 1010
Bst6I	CTCTTC	2 cut(s)	206, 591
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	5 cut(s)	123, 201, 315, 515, 807
BstKTI	GATC	5 cut(s)	382, 403, 496, 691, 778
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	379, 400, 493, 688, 775
BstMCI	CGRYCG	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	616, 788
BstNSI	RCATGY	1 cut(s)	582
BstV1I	GCAGC	5 cut(s)	394, 421, 463, 606, 662
BstV2I	GAAGAC	2 cut(s)	468, 894
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	658
BtrI	CACGTC	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	328, 798
BtsIMutI	CAGTG	3 cut(s)	252, 328, 798
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	833
CviAII	CATG	3 cut(s)	398, 579, 763
CviQI	GTAC	1 cut(s)	833
DdeI	CTNAG	5 cut(s)	123, 201, 315, 515, 807
DpnI	GATC	5 cut(s)	381, 402, 495, 690, 777
DpnII	GATC	5 cut(s)	379, 400, 493, 688, 775
EaeI	YGGCCR	1 cut(s)	656
Eam1104I	CTCTTC	2 cut(s)	206, 591
EarI	CTCTTC	2 cut(s)	206, 591
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	520
FaeI	CATG	3 cut(s)	401, 582, 766
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	3 cut(s)	397, 578, 762
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	5 cut(s)	408, 435, 477, 620, 676
Fsp4HI	GCNGC	5 cut(s)	408, 435, 477, 620, 676
FspBI	CTAG	2 cut(s)	438, 752
GluI	GCNGC	5 cut(s)	408, 435, 477, 620, 676
HaeIII	GGCC	1 cut(s)	658
Hin1II	CATG	3 cut(s)	401, 582, 766
HindIII	AAGCTT	2 cut(s)	571, 866
HinfI	GANTC	4 cut(s)	766, 855, 976, 1019
HphI	GGTGA	2 cut(s)	235, 947
Hpy166II	GTNNAC	5 cut(s)	55, 158, 551, 833, 1006
Hpy188I	TCNGA	5 cut(s)	124, 282, 693, 852, 1018
Hpy188III	TCNNGA	8 cut(s)	71, 302, 363, 374, 629, 716, 770, 859
Hpy8I	GTNNAC	5 cut(s)	55, 158, 551, 833, 1006
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	183, 214, 268, 284, 730
HpyCH4III	ACNGT	4 cut(s)	10, 59, 467, 1010
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	410, 479, 884, 969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	616, 788
HpyF3I	CTNAG	5 cut(s)	123, 201, 315, 515, 807
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	401, 582, 766
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	379, 400, 493, 688, 775
Lsp1109I	GCAGC	5 cut(s)	394, 421, 463, 606, 662
LweI	GCATC	2 cut(s)	419, 549
MaeI	CTAG	2 cut(s)	438, 752
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	4 cut(s)	4, 103, 146, 440
MalI	GATC	5 cut(s)	381, 402, 495, 690, 777
MboI	GATC	5 cut(s)	379, 400, 493, 688, 775
MboII	GAAGA	9 cut(s)	217, 220, 223, 229, 332, 389, 473, 608, 894
MflI	RGATCY	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	5 cut(s)	248, 328, 388, 429, 605
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	521
Mox20I	TGGCCA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	2 cut(s)	911, 959
Msp20I	TGGCCA	1 cut(s)	658
MwoI	GCNNNNNNNGC	2 cut(s)	616, 788
NdeII	GATC	5 cut(s)	379, 400, 493, 688, 775
NlaIII	CATG	3 cut(s)	401, 582, 766
NmuCI	GTSAC	3 cut(s)	103, 146, 440
NspI	RCATGY	1 cut(s)	582
NspV	TTCGAA	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	766, 855, 1019
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	5 cut(s)	409, 436, 478, 621, 677
PleI	GAGTC	1 cut(s)	984
PpsI	GAGTC	1 cut(s)	984
PspPI	GGNCC	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	775
RsaI	GTAC	1 cut(s)	834
RsaNI	GTAC	1 cut(s)	833
SaqAI	TTAA	2 cut(s)	911, 959
SatI	GCNGC	5 cut(s)	408, 435, 477, 620, 676
Sau3AI	GATC	5 cut(s)	379, 400, 493, 688, 775
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	985
SfaNI	GCATC	2 cut(s)	419, 549
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	680
Sse9I	AATT	5 cut(s)	248, 328, 388, 429, 605
SsiI	CCGC	1 cut(s)	678
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	438, 752
TaaI	ACNGT	4 cut(s)	10, 59, 467, 1010
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	99, 176
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	5 cut(s)	248, 328, 388, 429, 605
TatI	WGTACW	1 cut(s)	832
TfiI	GAWTC	3 cut(s)	766, 855, 1019
Tru1I	TTAA	2 cut(s)	911, 959
Tru9I	TTAA	2 cut(s)	911, 959
TscAI	CASTG	3 cut(s)	259, 328, 798
TseFI	GTSAC	3 cut(s)	103, 146, 440
TseI	GCWGC	5 cut(s)	407, 434, 476, 619, 675
Tsp45I	GTSAC	3 cut(s)	103, 146, 440
TspDTI	ATGAA	2 cut(s)	474, 539
TspGWI	ACGGA	1 cut(s)	978
TspRI	CASTG	3 cut(s)	259, 328, 798
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	582
XspI	CTAG	2 cut(s)	438, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.