Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

17031211 .. 17033269

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCTTCCGCTCCTTCACGCAAGGCTTTAAGCAAGATCGCGTGTAATAGGTTGCAGAAAGAGCTTTCTGAGTGGCAATTGAATCCCCCCACTGGATTTCGTCACAAAGTCACTGATAATCTTCAAAAATGGACAATAGATGTTACCGGAGCTCCAGGGACACTTTACGCTAATGAGACTTATCAGCTTCAGGTTGAATTTCCTGAACATTACCCTATGGAAGCACCCCAGGTAGTGTTTGTTTCTCCGGCACCTTCACATCCACATATATACAGCAATGGACATATTTGTTTAGATATTCTATATGACTCATGGTCACCAGCAATGACAGTGAATTCAGTCTGCATCAGCATTCTTTCGATGCTATCAAGTTCACCCGCAAAGCAACGCCCTGCGGATAACGATCGTTATGTGAAGAACTGTAAGAATGGGAGGTCTCCTAAGGAGACGAGGTGGTGGTTCCATGACGACAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

8.34

Isoelectric Point (pI)

68.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 102	1.6e-25	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	17
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	15, 384, 401
AcsI	RAATTY	2 cut(s)	203, 340
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	88, 131, 203
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	2 cut(s)	160, 234
AluBI	AGCT	4 cut(s)	9, 70, 158, 193
AluI	AGCT	4 cut(s)	9, 70, 158, 193
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	176, 446, 447
ApoI	RAATTY	2 cut(s)	203, 340
AsuHPI	GGTGA	2 cut(s)	315, 372
AxyI	CCTNAGG	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	162, 236
BcoDI	GTCTC	3 cut(s)	176, 446, 447
Bme1390I	CCNGG	2 cut(s)	162, 236
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	258, 467
BmrFI	CCNGG	2 cut(s)	162, 236
BmsI	GCATC	2 cut(s)	357, 360
BpmI	CTGGAG	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	161, 234
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 443, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	2 cut(s)	289, 336
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	162, 236
BseDI	CCNNGG	2 cut(s)	161, 234
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	2 cut(s)	289, 336
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	153, 254
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	176, 446, 447
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	42, 409
BspACI	CCGC	3 cut(s)	15, 384, 401
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	258, 467
BspQI	GCTCTTC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	447
BsrBI	CCGCTC	1 cut(s)	17
BsrDI	GCAATG	2 cut(s)	289, 336
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	161, 234
BssMI	GATC	2 cut(s)	42, 409
Bst2UI	CCWGG	2 cut(s)	162, 236
Bst4CI	ACNGT	2 cut(s)	337, 428
Bst6I	CTCTTC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	75, 447
BstEII	GGTNACC	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	45, 412
BstMAI	GTCTC	3 cut(s)	176, 446, 447
BstMBI	GATC	2 cut(s)	42, 409
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	162, 236
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	160, 234
BstUI	CGCG	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	96, 117, 342
CviAII	CATG	2 cut(s)	318, 470
CviJI	RGCY	5 cut(s)	9, 32, 70, 158, 193
CviKI_1	RGCY	5 cut(s)	9, 32, 70, 158, 193
DdeI	CTNAG	2 cut(s)	75, 447
DpnI	GATC	2 cut(s)	44, 411
DpnII	GATC	2 cut(s)	42, 409
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	160, 234
EcoT38I	GRGCYC	1 cut(s)	160
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	2 cut(s)	321, 473
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	317, 469
FauI	CCCGC	1 cut(s)	391
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	2 cut(s)	153, 254
Hin1II	CATG	2 cut(s)	321, 473
HinfI	GANTC	2 cut(s)	88, 314
HpaII	CCGG	2 cut(s)	153, 254
HphI	GGTGA	2 cut(s)	315, 372
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	30, 270
HpyCH4III	ACNGT	2 cut(s)	337, 428
HpyCH4V	TGCA	2 cut(s)	61, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	75, 447
Hsp92II	CATG	2 cut(s)	321, 473
Kzo9I	GATC	2 cut(s)	42, 409
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	3 cut(s)	22, 155, 163
LweI	GCATC	2 cut(s)	357, 360
MaeIII	GTNAC	4 cut(s)	107, 115, 148, 321
MalI	GATC	2 cut(s)	44, 411
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	2 cut(s)	42, 409
MboII	GAAGA	3 cut(s)	3, 119, 433
MfeI	CAATTG	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	83, 203, 340
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	432, 450
MseI	TTAA	1 cut(s)	35
MspI	CCGG	2 cut(s)	153, 254
MspR9I	CCNGG	2 cut(s)	162, 236
MunI	CAATTG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	162, 236
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	67
NdeII	GATC	2 cut(s)	42, 409
NlaIII	CATG	2 cut(s)	321, 473
NlaIV	GGNNCC	2 cut(s)	258, 467
NmuCI	GTSAC	3 cut(s)	107, 115, 321
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	88
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	2 cut(s)	160, 234
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	2 cut(s)	160, 234
PspN4I	GGNNCC	2 cut(s)	258, 467
PvuI	CGATCG	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	42, 409
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	162, 236
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	357, 360
Sse9I	AATT	3 cut(s)	83, 203, 340
SsiI	CCGC	3 cut(s)	15, 384, 401
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	160, 234
TaaI	ACNGT	2 cut(s)	337, 428
TaqI	TCGA	1 cut(s)	365
TasI	AATT	3 cut(s)	83, 203, 340
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	3 cut(s)	103, 124, 342
TseFI	GTSAC	3 cut(s)	107, 115, 321
Tsp45I	GTSAC	3 cut(s)	107, 115, 321
TspRI	CASTG	3 cut(s)	103, 124, 342
XapI	RAATTY	2 cut(s)	203, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.