Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

12195806 .. 12199220

Gene Structure 3415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGACCAGCTCCTCCGCCTCCTCCCGCAAGATTTTGAGTAAGATTGCTTGCAATCGGCTCCAGAAGGAGCTCGTGGAGTGGCAGGTCAATCCTCCGGCCGGCTTTAAACACAAAGTCACTGACAATCTCCAAAGGTGGGTGATTGAAGTGAATGGAGCGCCTGGGACTCTGTATTCGAATGAGACCTATCAGCTTCAGGTTGATTTCCCTGAGCATTACCCGATGGAAGCACCACAGGTTATCTTTGTGCCTCCGGCTCCAATGCATCCTCATATTTATAGCAACGGTCATATATGTTTAGGTAAGTGTTTAACGGTTCCATTTAAGCTGTTGCTGTCATTAGTTGCTGGAGTTTTATCTGTTGTGTGGTATCTAGTATCTGATTCTTGTGTAATCGGTCAGTTACAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

137

Amino Acids

15.3

Weight (kDa)

7.73

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 105	1.6e-24	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	2 cut(s)	15, 25
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	9, 70, 193, 328
AluI	AGCT	4 cut(s)	9, 70, 193, 328
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	59, 258, 318
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	2 cut(s)	44, 369
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	95, 99, 254
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	15, 25
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	59, 258, 318
BspMI	ACCTGC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	287, 316
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	49, 100
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	176
BstMCI	CGRYCG	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	49, 100
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	98
CviJI	RGCY	8 cut(s)	9, 58, 70, 98, 102, 193, 257, 328
CviKI_1	RGCY	8 cut(s)	9, 58, 70, 98, 102, 193, 257, 328
DdeI	CTNAG	1 cut(s)	210
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	72
FaiI	YATR	5 cut(s)	273, 279, 291, 293, 295
FaqI	GGGAC	1 cut(s)	178
FauI	CCCGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	159
GsuI	CTGGAG	2 cut(s)	44, 369
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	95, 99, 254
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	166, 383
HpaII	CCGG	3 cut(s)	95, 99, 254
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	287, 316
HpyCH4V	TGCA	2 cut(s)	51, 265
HpyF3I	CTNAG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LmnI	GCTCC	5 cut(s)	14, 63, 67, 155, 262
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	2 cut(s)	115, 402
MhlI	GDGCHC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	22, 28, 31, 102, 261, 279
Mph1103I	ATGCAT	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	98
MseI	TTAA	3 cut(s)	105, 311, 324
MspI	CCGG	3 cut(s)	95, 99, 254
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	59, 258, 318
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	383
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	59, 258, 318
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	105, 311, 324
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	176
SsiI	CCGC	2 cut(s)	15, 25
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	287, 316
TaqI	TCGA	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	105, 311, 324
Tru9I	TTAA	3 cut(s)	105, 311, 324
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	1 cut(s)	124
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.