Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

46070455 .. 46074911

Gene Structure 4457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0309300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTGTCAATTATTGATTGACAGTCAATATAGATTTAATAATCTTGGCCGACTACACCTATATATGAGGCAGCTACTCTCATCTTCAACTTGCAAACTTGTTCTTGGTTTACAATCTAAACACCAAAACATGGCAGCAGTTGTGGATTGTGATCAGCGTGAGAAGGAGCTGAAAGCATTCGACGAAAGCAAAGCTGGCGTCAAAGGAATTGCAGACGCTGGGGTGACCAAGCTCCCAAGCATGTTCATACACCCTCCGGAGAATCTACTAAACTCGGCATTTCCAGAAGATGATGAGCAACATCAGAAAATTCGCAACCTTCAAGTTCCGGTGATTGATCTCAGCGGTTTTGATAACAGCGAGAGGCGAAAAGAAATCGTCAATGACATAAACAAAGCAGCTGAGTCATGGGGCTTCTTTCAGTTGGTGAACCATGGAATTCCGCTTAATGTTATGGAGGGGATCCAGAAAAGTATCCGAGGGTTTCATGAGCTGCCCCAGGAGGAGAAGGTGAAGTGGTACTCGCGTGATTTTACGCAGAAGGTTAACTTCTTCAGCAATGGAGATTTGAAGGTGTCGACGCCAGCTGACTGGAGGGATACCTTGTCATGCAAGGTCCTGGAAGACCCAGAAAGCTTTGAAGCAATACCGCAAGTGTGCAGACGAGAAGTTAGTGAGTATATGAAACACATCGATGGAGTGCAAGAGAAGTTATCCGAGTTATTTTCAGAAGCTTTAGGTCTCAATAGTGATTATCTTGCAAGCACAGGGTGCTTCAAATCGAGGTCACTGGCGTGCCACTATTTCCCGATTTGCCCTGAACCGCATTTGACTATGGGCGGAACCAAGCATTCGGACCTCTCGTTTCTTACCTTGCTCCTTCAAGACAGTGTTGGCGGCCTACAAGTTTTTCATCAAAATGTTTGGATTGATGTTCCCCCAGTGAAGGGAGCTTTGCTAGCAAATATTGCTGACATGATGCAGATCATTACAAATGGCAAGTTCAAGAGCGTGGAGCATAGAGTTTTGATGAAACCAACCGTCGAGCCTCGTATCTCAATTGCATGTTTTTTGGGTACGGATGACCTCCAAAAACCATACGGGCCGATAAAAGAACTTATATCGGAAAACAATCCACCGATTTATAGCGAAGTCAAATTCGGTGAATACATGAAAAAGTATAAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

396

Amino Acids

44.9

Weight (kDa)

6.09

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	109 - 209	3.3e-23	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	263 - 359	3.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	578
AccII	CGCG	1 cut(s)	526
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	6 cut(s)	345, 443, 650, 824, 840, 897
AclWI	GGATC	2 cut(s)	457, 470
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	3 cut(s)	309, 438, 1157
AcuI	CTGAAG	1 cut(s)	538
AcyI	GRCGYC	2 cut(s)	198, 581
AdeI	CACNNNGTG	1 cut(s)	771
AfaI	GTAC	2 cut(s)	521, 1078
AfiI	CCNNNNNNNGG	3 cut(s)	130, 946, 947
AgsI	TTSAA	7 cut(s)	87, 323, 571, 641, 778, 884, 1006
AjnI	CCWGG	2 cut(s)	498, 618
AleI	CACNNNNGTG	1 cut(s)	793
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	2 cut(s)	457, 470
AlwNI	CAGNNNCTG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	256
AoxI	GGCC	3 cut(s)	46, 898, 1103
ApeKI	GCWGC	4 cut(s)	70, 134, 398, 493
ApoI	RAATTY	3 cut(s)	309, 438, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	616, 856, 1103
AsuHPI	GGTGA	5 cut(s)	235, 343, 439, 523, 1175
AsuNHI	GCTAGC	1 cut(s)	958
AvaII	GGWCC	2 cut(s)	616, 856
BaeI	ACNNNNGTAYC	2 cut(s)	511, 544
BamHI	GGATCC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	82, 146, 410, 480
BccI	CCATC	1 cut(s)	689
BciT130I	CCWGG	2 cut(s)	500, 620
BciVI	GTATCC	2 cut(s)	485, 592
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	959
BfuI	GTATCC	2 cut(s)	485, 592
BisI	GCNGC	5 cut(s)	71, 135, 399, 494, 898
BlsI	GCNGC	5 cut(s)	72, 136, 400, 495, 899
Bme1390I	CCNGG	2 cut(s)	500, 620
Bme18I	GGWCC	2 cut(s)	616, 856
BmgT120I	GGNCC	3 cut(s)	616, 856, 1103
BmiI	GGNNCC	2 cut(s)	464, 844
BmrFI	CCNGG	2 cut(s)	500, 620
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	1 cut(s)	969
BmtI	GCTAGC	1 cut(s)	962
BmuI	ACTGGG	1 cut(s)	935
BpiI	GAAGAC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	693
BsaBI	GATNNNNATC	2 cut(s)	150, 983
BsaHI	GRCGYC	2 cut(s)	198, 581
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	433, 478, 498
BsaWI	WCCGGW	2 cut(s)	256, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 946, 947
Bse1I	ACTGG	3 cut(s)	596, 795, 941
Bse3DI	GCAATG	1 cut(s)	565
Bse8I	GATNNNNATC	2 cut(s)	150, 983
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	500, 620
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	433, 478, 498
BseGI	GGATG	1 cut(s)	1087
BseJI	GATNNNNATC	2 cut(s)	150, 983
BseLI	CCNNNNNNNGG	3 cut(s)	130, 946, 947
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	355, 393
BseNI	ACTGG	3 cut(s)	596, 795, 941
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	4 cut(s)	82, 146, 410, 480
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	3 cut(s)	48, 900, 1105
BshVI	ATCGAT	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	257, 329
BslI	CCNNNNNNNGG	3 cut(s)	130, 946, 947
BsmAI	GTCTC	1 cut(s)	746
BsmI	GAATGC	2 cut(s)	176, 850
BsnI	GGCC	3 cut(s)	48, 900, 1105
Bso31I	GGTCTC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	151, 337, 462, 984
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	6 cut(s)	345, 443, 650, 824, 840, 897
BspANI	GGCC	3 cut(s)	48, 900, 1105
BspCNI	CTCAG	2 cut(s)	354, 394
BspDI	ATCGAT	1 cut(s)	693
BspEI	TCCGGA	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	464, 844
BspOI	GCTAGC	1 cut(s)	962
BspPI	GGATC	2 cut(s)	457, 470
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	565
BsrI	ACTGG	3 cut(s)	596, 795, 941
BssECI	CCNNGG	3 cut(s)	433, 478, 498
BssMI	GATC	4 cut(s)	151, 337, 462, 984
BssNI	GRCGYC	2 cut(s)	198, 581
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	2 cut(s)	500, 620
Bst4CI	ACNGT	3 cut(s)	23, 890, 1042
BstACI	GRCGYC	2 cut(s)	198, 581
BstAPI	GCANNNNNTGC	2 cut(s)	771, 968
BstC8I	GCNNGC	5 cut(s)	196, 585, 763, 796, 960
BstDEI	CTNAG	2 cut(s)	341, 402
BstDSI	CCRYGG	1 cut(s)	433
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	1087
BstFNI	CGCG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	154, 340, 465, 987
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	4 cut(s)	151, 337, 462, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 771, 959, 968
BstNI	CCWGG	2 cut(s)	500, 620
BstNSI	RCATGY	2 cut(s)	244, 1068
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	498, 618
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	4 cut(s)	82, 146, 410, 480
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	462
Bsu15I	ATCGAT	1 cut(s)	693
BsuI	GTATCC	2 cut(s)	485, 592
BsuRI	GGCC	3 cut(s)	48, 900, 1105
BsuTUI	ATCGAT	1 cut(s)	693
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	1087
BtsIMutI	CAGTG	3 cut(s)	788, 895, 948
Cac8I	GCNNGC	5 cut(s)	196, 585, 763, 796, 960
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	616, 856, 1103
ClaI	ATCGAT	1 cut(s)	693
CseI	GACGC	3 cut(s)	187, 224, 589
Csp6I	GTAC	2 cut(s)	520, 1077
CviAII	CATG	9 cut(s)	130, 241, 408, 434, 488, 609, 976, 1065, 1171
CviQI	GTAC	2 cut(s)	520, 1077
DdeI	CTNAG	2 cut(s)	341, 402
DpnI	GATC	4 cut(s)	153, 339, 464, 986
DpnII	GATC	4 cut(s)	151, 337, 462, 984
DraIII	CACNNNGTG	1 cut(s)	771
EaeI	YGGCCR	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	616, 856
Eco57I	CTGAAG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	616
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	498, 618
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	9 cut(s)	133, 244, 411, 437, 491, 612, 979, 1068, 1174
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	9 cut(s)	129, 240, 407, 433, 487, 608, 975, 1064, 1170
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	578
Fnu4HI	GCNGC	5 cut(s)	71, 135, 399, 494, 898
FokI	GGATG	1 cut(s)	1094
Fsp4HI	GCNGC	5 cut(s)	71, 135, 399, 494, 898
FspBI	CTAG	1 cut(s)	959
GluI	GCNGC	5 cut(s)	71, 135, 399, 494, 898
GsaI	CCCAGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	48, 900, 1105
HapII	CCGG	2 cut(s)	257, 329
HgaI	GACGC	3 cut(s)	187, 224, 589
Hin1I	GRCGYC	2 cut(s)	198, 581
Hin1II	CATG	9 cut(s)	133, 244, 411, 437, 491, 612, 979, 1068, 1174
HincII	GTYRAC	2 cut(s)	547, 579
HindII	GTYRAC	2 cut(s)	547, 579
HindIII	AAGCTT	2 cut(s)	634, 732
HinfI	GANTC	2 cut(s)	262, 404
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	2 cut(s)	257, 329
HphI	GGTGA	5 cut(s)	235, 343, 439, 523, 1175
Hpy166II	GTNNAC	4 cut(s)	110, 430, 547, 579
Hpy188I	TCNGA	6 cut(s)	306, 479, 718, 730, 856, 1126
Hpy188III	TCNNGA	7 cut(s)	257, 284, 466, 488, 808, 884, 1006
Hpy8I	GTNNAC	4 cut(s)	110, 430, 547, 579
Hpy99I	CGWCG	3 cut(s)	185, 583, 1046
HpyAV	CCTTC	7 cut(s)	157, 329, 502, 535, 565, 890, 940
HpyCH4III	ACNGT	3 cut(s)	23, 890, 1042
HpyCH4V	TGCA	8 cut(s)	93, 212, 612, 660, 703, 761, 982, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 771, 959, 968
HpyF3I	CTNAG	2 cut(s)	341, 402
Hsp92I	GRCGYC	2 cut(s)	198, 581
Hsp92II	CATG	9 cut(s)	133, 244, 411, 437, 491, 612, 979, 1068, 1174
Kpn2I	TCCGGA	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	151
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	151, 337, 462, 984
LmnI	GCTCC	5 cut(s)	166, 237, 882, 950, 1015
Lsp1109I	GCAGC	4 cut(s)	82, 146, 410, 480
LweI	GCATC	1 cut(s)	969
MaeI	CTAG	1 cut(s)	959
MaeIII	GTNAC	2 cut(s)	223, 786
MalI	GATC	4 cut(s)	153, 339, 464, 986
MboI	GATC	4 cut(s)	151, 337, 462, 984
MboII	GAAGA	4 cut(s)	75, 299, 544, 635
MfeI	CAATTG	1 cut(s)	1059
MflI	RGATCY	1 cut(s)	462
MluCI	AATT	6 cut(s)	8, 207, 309, 438, 1059, 1157
MlyI	GAGTC	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	36, 447, 546
MslI	CAYNNNNRTG	3 cut(s)	693, 793, 918
MspA1I	CMGCKG	3 cut(s)	345, 401, 587
MspI	CCGG	2 cut(s)	257, 329
MspR9I	CCNGG	2 cut(s)	500, 620
MunI	CAATTG	1 cut(s)	1059
Mva1269I	GAATGC	2 cut(s)	176, 850
MvaI	CCWGG	2 cut(s)	500, 620
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	4 cut(s)	195, 771, 959, 968
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	151, 337, 462, 984
NheI	GCTAGC	1 cut(s)	958
NlaIII	CATG	9 cut(s)	133, 244, 411, 437, 491, 612, 979, 1068, 1174
NlaIV	GGNNCC	2 cut(s)	464, 844
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	223, 786
NspI	RCATGY	2 cut(s)	244, 1068
OliI	CACNNNNGTG	1 cut(s)	793
PagI	TCATGA	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PctI	GAATGC	2 cut(s)	176, 850
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	5 cut(s)	72, 136, 400, 495, 899
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	498, 618
PspEI	GGTNACC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	498, 618
PspN4I	GGNNCC	2 cut(s)	464, 844
PspPI	GGNCC	3 cut(s)	616, 856, 1103
PspPPI	RGGWCCY	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	462
PvuII	CAGCTG	2 cut(s)	401, 587
RsaI	GTAC	2 cut(s)	521, 1078
RsaNI	GTAC	2 cut(s)	520, 1077
RseI	CAYNNNNRTG	3 cut(s)	693, 793, 918
SalI	GTCGAC	1 cut(s)	577
SaqAI	TTAA	3 cut(s)	36, 447, 546
SatI	GCNGC	5 cut(s)	71, 135, 399, 494, 898
Sau3AI	GATC	4 cut(s)	151, 337, 462, 984
Sau96I	GGNCC	3 cut(s)	616, 856, 1103
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	500, 620
SfaNI	GCATC	1 cut(s)	969
SinI	GGWCC	2 cut(s)	616, 856
SmiMI	CAYNNNNRTG	3 cut(s)	693, 793, 918
Sse9I	AATT	6 cut(s)	8, 207, 309, 438, 1059, 1157
SsiI	CCGC	6 cut(s)	345, 443, 650, 824, 840, 897
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	498, 618
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	3 cut(s)	23, 890, 1042
TaqI	TCGA	5 cut(s)	180, 578, 693, 782, 1044
TasI	AATT	6 cut(s)	8, 207, 309, 438, 1059, 1157
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	36, 447, 546
Tru9I	TTAA	3 cut(s)	36, 447, 546
TscAI	CASTG	3 cut(s)	795, 895, 948
TseFI	GTSAC	2 cut(s)	223, 786
TseI	GCWGC	4 cut(s)	70, 134, 398, 493
Tsp45I	GTSAC	2 cut(s)	223, 786
TspDTI	ATGAA	6 cut(s)	235, 476, 698, 902, 1046, 1187
TspGWI	ACGGA	1 cut(s)	1094
TspRI	CASTG	3 cut(s)	795, 895, 948
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	616, 856
XapI	RAATTY	3 cut(s)	309, 438, 1157
XceI	RCATGY	2 cut(s)	244, 1068
XmiI	GTMKAC	1 cut(s)	578
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.