Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

80612132 .. 80615328

Gene Structure 3197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCCTCCGCCTCCTCCCGCAAGATTTTGAGTAAGATTGCTTGCAATCGGCTCCAGAAGGAGCTCGTGGAGTGGCAGGTCAATCCTCCGGCCGGCTTTAAACACAAAGTCACTGACAATCTCCAAAGGTGGGTGATTGAAGTGAATGGAGCGCCTGGGACTCTGTATTCGAATGAGACCTATCAGCTTCAGGTTGATTTCCCTGAGCATTACCCGATGGAAGCACCACAGGTTATCTTTGTGCCTCCGGCTCCAATGCATCCTCATATTTATAGCAACGGTCATATATGTTTAGATATTTTGTACGATTCTTGGTCGCCAGCCATGACTGTTAGTTCCATCTGTATTAGCATTCTCTCCATGCTATCAAGCTCCACTGTGAAGCAACGCCCTGAAGATAACGACCGGTATGTAAAGAACTGTAGAAATGGCAGATCTCCCAAGGAGACGAGATGGTGGTTCCATGATGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.46

Weight (kDa)

7.72

Isoelectric Point (pI)

70.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 154	2.7e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	2 cut(s)	15, 25
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	179, 420
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AgeI	ACCGGT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	9, 70, 193, 378
AluI	AGCT	4 cut(s)	9, 70, 193, 378
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	176, 446
AoxI	GGCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AsiGI	ACCGGT	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	3 cut(s)	217, 353, 453
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	176, 446
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	59, 258, 467
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	161, 447
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
Bse118I	RCCGGY	2 cut(s)	98, 411
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	161, 447
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	96
Bsh1285I	CGRYCG	2 cut(s)	99, 412
BshFI	GGCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	411
BsiEI	CGRYCG	2 cut(s)	99, 412
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	95, 99, 254, 412
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmAI	GTCTC	2 cut(s)	176, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	2 cut(s)	15, 25
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	59, 258, 467
BspMI	ACCTGC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	2 cut(s)	98, 411
BssAI	RCCGGY	2 cut(s)	98, 411
BssECI	CCNNGG	2 cut(s)	161, 447
BssMI	GATC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	4 cut(s)	287, 337, 385, 428
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	49, 100, 327
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	176, 446
BstMBI	GATC	1 cut(s)	440
BstMCI	CGRYCG	2 cut(s)	99, 412
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	117, 381
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	49, 100, 327
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	2 cut(s)	98, 411
Csp6I	GTAC	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	411
CviAII	CATG	3 cut(s)	331, 367, 470
CviJI	RGCY	9 cut(s)	9, 58, 70, 98, 102, 193, 257, 329, 378
CviKI_1	RGCY	9 cut(s)	9, 58, 70, 98, 102, 193, 257, 329, 378
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	179, 420
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	334, 370, 473
FaiI	YATR	9 cut(s)	273, 279, 291, 293, 295, 332, 368, 417, 471
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	330, 366, 469
FauI	CCCGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	4 cut(s)	95, 99, 254, 412
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	3 cut(s)	334, 370, 473
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	166, 314
HpaII	CCGG	4 cut(s)	95, 99, 254, 412
HphI	GGTGA	1 cut(s)	151
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	4 cut(s)	287, 337, 385, 428
HpyCH4V	TGCA	2 cut(s)	51, 265
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	334, 370, 473
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	6 cut(s)	14, 63, 67, 155, 262, 383
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	72
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	22, 28, 31, 102, 261, 279
Mph1103I	ATGCAT	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	98
MseI	TTAA	1 cut(s)	105
MspI	CCGG	4 cut(s)	95, 99, 254, 412
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	440
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	334, 370, 473
NlaIV	GGNNCC	3 cut(s)	59, 258, 467
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	176
PctI	GAATGC	1 cut(s)	357
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	411
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	59, 258, 467
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	440
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	9 cut(s)	11, 72, 87, 137, 188, 195, 201, 240, 380
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	427
SfuI	TTCGAA	1 cut(s)	176
SsiI	CCGC	2 cut(s)	15, 25
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	287, 337, 385, 428
TaqI	TCGA	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	124, 388
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspRI	CASTG	2 cut(s)	124, 388
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.