Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

28313379 .. 28315122

Gene Structure 1744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCAAGTTCTGGTGCTCCTTCACGCAAGACTCTGAGTAAGATCGCGACTAATCGTCTTCAGAAAGAGCTTGTGGAATGGCAGATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGATGGATAATTGAAGTTATTGGAGCTCCAGGAACTCTATATGCCAACGATACTTATCAGCTTCAAGTTGATTTTCCAGAACATTATCCTATGGAATCGCCACAAGTGATTTTTCTTCATCCAGCTCCTCTGCATCCTCACATTTACAGCAATGGGCATATTTGTCTAGATATTTTGTATGATTCGTGGTCTCCAGCCATGACGGTGAGTTCTATCTGCATTAGCATCCTCTCCATGCTCTCAAGCTCGACTGAAAAGCAACGACCAACCGATAATGACCGATATGTGAAGAATTGTAAGAACGGAAGATCTCCAAAGGAGACCCGATGGTGGTTCCACGACGATAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.48

Weight (kDa)

7.77

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 154	1e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccII	CGCG	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	98, 462
AgsI	TTSAA	3 cut(s)	106, 146, 197
AhdI	GACNNNNNGTC	1 cut(s)	54
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	5 cut(s)	70, 158, 193, 257, 378
AluI	AGCT	5 cut(s)	70, 158, 193, 257, 378
Alw21I	GWGCWC	2 cut(s)	19, 160
Alw26I	GTCTC	2 cut(s)	327, 446
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AsuHPI	GGTGA	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	19, 160
BccI	CCATC	2 cut(s)	129, 453
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	327, 446
BfaI	CTAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	274, 366
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	2 cut(s)	144, 309
BpuEI	CTTGAG	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	2 cut(s)	327, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 462
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	250, 265, 357
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	98, 462
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	19, 160
BslI	CCNNNNNNNGG	2 cut(s)	98, 462
BsmAI	GTCTC	2 cut(s)	327, 446
Bso31I	GGTCTC	2 cut(s)	327, 446
Bsp1286I	GDGCHC	2 cut(s)	19, 160
Bsp143I	GATC	2 cut(s)	42, 440
Bsp68I	TCGCGA	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	467
BspTNI	GGTCTC	2 cut(s)	327, 446
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	42, 440
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	35
BstF5I	GGATG	3 cut(s)	250, 265, 357
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	45, 443
BstMAI	GTCTC	2 cut(s)	327, 446
BstMBI	GATC	2 cut(s)	42, 440
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	250, 265, 357
BtsIMutI	CAGTG	1 cut(s)	117
BtuMI	TCGCGA	1 cut(s)	47
CviAII	CATG	2 cut(s)	331, 367
CviJI	RGCY	6 cut(s)	70, 158, 193, 257, 329, 378
CviKI_1	RGCY	6 cut(s)	70, 158, 193, 257, 329, 378
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	2 cut(s)	44, 442
DpnII	GATC	2 cut(s)	42, 440
DriI	GACNNNNNGTC	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	327, 446
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	2 cut(s)	334, 370
FaiI	YATR	9 cut(s)	172, 174, 224, 291, 312, 332, 368, 417, 484
FatI	CATG	2 cut(s)	330, 366
FokI	GGATG	3 cut(s)	237, 252, 344
FriOI	GRGCYC	1 cut(s)	160
FspBI	CTAG	1 cut(s)	299
GsuI	CTGGAG	2 cut(s)	144, 309
Hin1II	CATG	2 cut(s)	334, 370
HinfI	GANTC	4 cut(s)	31, 88, 227, 314
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	36, 63
Hpy188III	TCNNGA	3 cut(s)	46, 209, 299
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	265, 351
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	2 cut(s)	334, 370
Kzo9I	GATC	2 cut(s)	42, 440
LmnI	GCTCC	4 cut(s)	22, 155, 163, 262
LpnPI	CCDG	6 cut(s)	84, 147, 174, 222, 267, 339
LweI	GCATC	2 cut(s)	274, 366
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	44, 442
MboI	GATC	2 cut(s)	42, 440
MboII	GAAGA	4 cut(s)	50, 239, 433, 450
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	19, 160
MluCI	AATT	2 cut(s)	141, 424
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	3 cut(s)	270, 279, 371
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	47
NdeII	GATC	2 cut(s)	42, 440
NlaIII	CATG	2 cut(s)	334, 370
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	1 cut(s)	115
NruI	TCGCGA	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	88, 227, 314
PflMI	CCANNNNNTGG	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	160
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	42, 440
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	19, 160
SetI	ASST	6 cut(s)	72, 97, 160, 195, 259, 380
SfaNI	GCATC	2 cut(s)	274, 366
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	141, 424
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	141, 424
TfiI	GAWTC	3 cut(s)	88, 227, 314
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	101, 239
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.