Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

16789953 .. 16792600

Gene Structure 2648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCCTCCGCCTCCGGTCGCAAGACTTTGAGTAAGATTGCTTGCAATCGGCTCCAGAAGGAGCTCCTGGAGTGGCAGGTCAATCCCCCGGCAGGTTTCAAACACAAAGTCACCGATAATCTCCAAAGGTGGGTGATTGAAGTCAATGGAGCCCCTGGAACTCTCTATTCTAATGAGACCTATCAGCTTCAGGTCGATTTTCCTGAGCATTACCCAATGGAAGCCCCACAGGTTATATTTATCCCTCCTGCTCCACTGCATCCTCATATTTATAGCAACGGTCATATCTGTTTAGATATTTTGTACGATTCATGGTCACCAGCCATGACTGTTAGTTCCATCTGTATTAGCATTCTCTCCATGCTATCAAGCTCCACCATGAAGCAACGTCCGGAAGATAATGACCGATATGTAAAGAATTGTAGAAATGGCAGATCTCCCAAGGAGACGAGATGGTGGTTTCATGATGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

18.46

Weight (kDa)

7.72

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	73, 89
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AgsI	TTSAA	2 cut(s)	106, 146
AjnI	CCWGG	2 cut(s)	72, 160
AluBI	AGCT	4 cut(s)	9, 70, 193, 378
AluI	AGCT	4 cut(s)	9, 70, 193, 378
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	176, 446
Aor13HI	TCCGGA	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	109, 151, 315
BanII	GRGCYC	2 cut(s)	72, 160
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	2 cut(s)	353, 453
BciT130I	CCWGG	2 cut(s)	74, 162
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	176, 446
BfuAI	ACCTGC	2 cut(s)	73, 89
BglII	AGATCT	1 cut(s)	440
Bme1390I	CCNGG	3 cut(s)	74, 95, 162
BmiI	GGNNCC	2 cut(s)	59, 157
BmrFI	CCNGG	3 cut(s)	74, 95, 162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	2 cut(s)	44, 95
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	93, 160, 447
BsaWI	WCCGGW	2 cut(s)	20, 397
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	74, 162
BseDI	CCNNGG	3 cut(s)	93, 160, 447
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMII	CTCAG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	21, 95, 398
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmAI	GTCTC	2 cut(s)	176, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	72, 160
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	59, 157
BspMI	ACCTGC	2 cut(s)	73, 89
BspTNI	GGTCTC	1 cut(s)	176
BssECI	CCNNGG	3 cut(s)	93, 160, 447
BssMI	GATC	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	74, 162
Bst4CI	ACNGT	2 cut(s)	287, 337
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	176, 446
BstMBI	GATC	1 cut(s)	440
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	74, 162
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	3 cut(s)	72, 93, 160
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	260
BveI	ACCTGC	2 cut(s)	73, 89
Cac8I	GCNNGC	1 cut(s)	49
CciI	TCATGA	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	5 cut(s)	318, 331, 367, 385, 470
CviJI	RGCY	8 cut(s)	9, 58, 70, 158, 193, 230, 329, 378
CviKI_1	RGCY	8 cut(s)	9, 58, 70, 158, 193, 230, 329, 378
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	2 cut(s)	72, 160
Eco31I	GGTCTC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	70
EcoO65I	GGTNACC	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	72, 160
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	72, 160
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	5 cut(s)	321, 334, 370, 388, 473
FatI	CATG	5 cut(s)	317, 330, 366, 384, 469
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	2 cut(s)	72, 160
GsuI	CTGGAG	2 cut(s)	44, 95
HapII	CCGG	3 cut(s)	21, 95, 398
Hin1II	CATG	5 cut(s)	321, 334, 370, 388, 473
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	21, 95, 398
HphI	GGTGA	3 cut(s)	109, 151, 315
Hpy188III	TCNNGA	4 cut(s)	61, 209, 398, 470
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	287, 337
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	51, 265
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	5 cut(s)	321, 334, 370, 388, 473
Kpn2I	TCCGGA	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	7 cut(s)	14, 63, 67, 75, 155, 262, 383
LweI	GCATC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	115, 321
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	72, 160
MluCI	AATT	1 cut(s)	424
MnlI	CCTC	4 cut(s)	22, 28, 261, 279
MroI	TCCGGA	1 cut(s)	397
MspI	CCGG	3 cut(s)	21, 95, 398
MspR9I	CCNGG	3 cut(s)	74, 95, 162
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	74, 162
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	5 cut(s)	321, 334, 370, 388, 473
NlaIV	GGNNCC	2 cut(s)	59, 157
NmuCI	GTSAC	2 cut(s)	115, 321
PagI	TCATGA	1 cut(s)	469
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	72, 160
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	2 cut(s)	72, 160
PspN4I	GGNNCC	2 cut(s)	59, 157
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	74, 95, 162
SduI	GDGCHC	2 cut(s)	72, 160
SfaNI	GCATC	1 cut(s)	274
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	72, 93, 160
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	287, 337
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	115, 321
Tsp45I	GTSAC	2 cut(s)	115, 321
TspDTI	ATGAA	3 cut(s)	306, 401, 458
TspRI	CASTG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.