Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

6856067 .. 6856546

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATCGTTACAAAGACGTTATGCAATGGAACGACTCTGCAGCTGAAGAGGCATTCAATTGTGCAGAGAAGCGGTTTCTGGATAAGATTGACGGCCTTCCCTGCAACATACCACTGCCTGATCCTGATGCTTACATTCATAAAATAGATTGGAGCAGCTCCAGAACTAGTACTGGTCCGGAACTGGTTACGGATAACCAAGAAACTCGAGGCAAAGATGAAGGAGAGGTTGTTATTGATGATGTTGAGTCCCTTTCGGATCAGTCATCTTGGGGCCCTGGATGGTTGCCGGGGGCATGGGACGAGTCGGAGGAGGAATCCGAAGAGGATGCTAACAGCAGCGTAGATAATGAAGAGAATCTTGATCACAAGGAAGCAGCAGATGTAGTAGGATTTGACAACAGTATTGGGAATAACCGGGATAAAAACAAAATGGTACAAGAATTGATGATGGGGTTAATTTTGGAGAGTCCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

159

Amino Acids

17.83

Weight (kDa)

4.11

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	116, 267
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	2 cut(s)	172, 438
AgsI	TTSAA	1 cut(s)	58
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	44, 159
AluI	AGCT	2 cut(s)	44, 159
AlwI	GGATC	2 cut(s)	116, 267
Ama87I	CYCGRG	1 cut(s)	207
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	2 cut(s)	94, 274
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	41, 156, 339, 377
AspS9I	GGNCC	3 cut(s)	176, 274, 275
AsuC2I	CCSGG	2 cut(s)	291, 419
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	53, 168, 351, 389
BccI	CCATC	2 cut(s)	276, 445
BceAI	ACGGC	1 cut(s)	109
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	279
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	2 cut(s)	291, 419
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	4 cut(s)	42, 157, 340, 378
BlsI	GCNGC	4 cut(s)	43, 158, 341, 379
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	3 cut(s)	279, 291, 419
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	176, 274, 275
BmiI	GGNNCC	2 cut(s)	275, 276
BmrFI	CCNGG	3 cut(s)	279, 291, 419
BmsI	GCATC	3 cut(s)	13, 118, 319
BpmI	CTGGAG	1 cut(s)	145
BpuMI	CCSGG	2 cut(s)	291, 419
BsaJI	CCNNGG	2 cut(s)	277, 290
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bse1I	ACTGG	2 cut(s)	178, 189
Bse3DI	GCAATG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	277, 290
BseGI	GGATG	2 cut(s)	287, 334
BseMI	GCAATG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	178, 189
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	4 cut(s)	53, 168, 351, 389
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	96, 276
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	179, 290, 418
BslFI	GGGAC	2 cut(s)	235, 314
BsmFI	GGGAC	2 cut(s)	235, 314
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	96, 276
BsoBI	CYCGRG	1 cut(s)	207
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	278
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	3 cut(s)	121, 259, 364
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	96, 276
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	275, 276
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	116, 267
BsrDI	GCAATG	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	178, 189
BssECI	CCNNGG	2 cut(s)	277, 290
BssMI	GATC	3 cut(s)	121, 259, 364
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	3 cut(s)	42, 318, 348
BstF5I	GGATG	2 cut(s)	287, 334
BstKTI	GATC	3 cut(s)	124, 262, 367
BstMBI	GATC	3 cut(s)	121, 259, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 102
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	277, 289, 417
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	278
BstV1I	GCAGC	4 cut(s)	53, 168, 351, 389
BsuRI	GGCC	2 cut(s)	96, 276
BtsCI	GGATG	2 cut(s)	287, 334
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cfr13I	GGNCC	3 cut(s)	176, 274, 275
Csp6I	GTAC	2 cut(s)	171, 437
CviAII	CATG	1 cut(s)	297
CviJI	RGCY	4 cut(s)	44, 96, 159, 276
CviKI_1	RGCY	4 cut(s)	44, 96, 159, 276
CviQI	GTAC	2 cut(s)	171, 437
DpnI	GATC	3 cut(s)	123, 261, 366
DpnII	GATC	3 cut(s)	121, 259, 364
Eam1104I	CTCTTC	3 cut(s)	42, 318, 348
EarI	CTCTTC	3 cut(s)	42, 318, 348
Eco24I	GRGCYC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	207
EcoO109I	RGGNCCY	2 cut(s)	274, 275
EcoRII	CCWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	278
FaeI	CATG	1 cut(s)	300
FaiI	YATR	4 cut(s)	23, 110, 141, 298
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	235, 314
FatI	CATG	1 cut(s)	296
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	42, 157, 340, 378
FokI	GGATG	2 cut(s)	294, 341
FriOI	GRGCYC	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	42, 157, 340, 378
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	42, 157, 340, 378
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	96, 276
HapII	CCGG	3 cut(s)	179, 290, 418
Hin1II	CATG	1 cut(s)	300
HinfI	GANTC	6 cut(s)	35, 248, 305, 317, 358, 469
HpaII	CCGG	3 cut(s)	179, 290, 418
Hpy188I	TCNGA	3 cut(s)	259, 310, 322
Hpy188III	TCNNGA	5 cut(s)	80, 125, 162, 179, 362
HpyAV	CCTTC	2 cut(s)	107, 215
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	4, 25, 41, 65, 105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 102
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	300
Kpn2I	TCCGGA	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	121, 259, 364
LmnI	GCTCC	2 cut(s)	153, 164
Lsp1109I	GCAGC	4 cut(s)	53, 168, 351, 389
LweI	GCATC	3 cut(s)	13, 118, 319
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	8, 187
MalI	GATC	3 cut(s)	123, 261, 366
MboI	GATC	3 cut(s)	121, 259, 364
MboII	GAAGA	3 cut(s)	59, 335, 365
MfeI	CAATTG	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	278
MluCI	AATT	3 cut(s)	58, 443, 459
MlyI	GAGTC	4 cut(s)	29, 257, 314, 478
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	43, 203, 220, 304, 307, 319
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	179, 290, 418
MspR9I	CCNGG	3 cut(s)	279, 291, 419
MunI	CAATTG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	50, 102
NciI	CCSGG	2 cut(s)	291, 419
NdeII	GATC	3 cut(s)	121, 259, 364
NlaIII	CATG	1 cut(s)	300
NlaIV	GGNNCC	2 cut(s)	275, 276
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	207
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	317, 358
PkrI	GCNGC	4 cut(s)	43, 158, 341, 379
PleI	GAGTC	4 cut(s)	29, 256, 313, 477
PpsI	GAGTC	4 cut(s)	29, 256, 313, 477
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	275, 276
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	176, 274, 275
PspXI	VCTCGAGB	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	43
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	2 cut(s)	172, 438
RsaNI	GTAC	2 cut(s)	171, 437
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	4 cut(s)	42, 157, 340, 378
Sau3AI	GATC	3 cut(s)	121, 259, 364
Sau96I	GGNCC	3 cut(s)	176, 274, 275
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	4 cut(s)	29, 257, 314, 478
ScrFI	CCNGG	3 cut(s)	279, 291, 419
SduI	GDGCHC	1 cut(s)	278
SetI	ASST	4 cut(s)	21, 46, 161, 231
SfaNI	GCATC	3 cut(s)	13, 118, 319
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	3 cut(s)	58, 443, 459
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	277, 289, 417
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	208
TasI	AATT	3 cut(s)	58, 443, 459
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	2 cut(s)	317, 358
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	4 cut(s)	41, 156, 339, 377
TspDTI	ATGAA	3 cut(s)	128, 234, 366
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	207
XspI	CTAG	1 cut(s)	168
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.