Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

6736274 .. 6738548

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCCTCCGCCGCCTCCCGCAAGATTTTGAGTAAGATTGCCTGCAATCGCCTTCAGAAGGAGCTTTTGGAGTGGCAGGTTAATCCTCCCGCGGGGTTTAAACACAAAGTCACTGACAATCTCCAAAGGTGGGTGATTGAGGTGACTGGAGCGCCTGGAACTCTCTATTCGAATGAGACCTATCAGCTTCAGGTCGATTTCCCTGAGCATTACCCAATGGAGGCACCACAGGTTATCTTTGTGCCTCCGGCTCCAATGCATCCTCATATTTACAGCAACGGTCATATATGTTTAGATATTTTGTACGATTCTTGGTCACCAGCCATGACTGTTAGTTCTATCTGTATTAGCATTCTCTCAATGCTATCAAGCTCCACTGCGAAGCAACGCCCTGAAGATAACGATCGGTATGTAAAGAACTGTAGAAACGGCAGATCTCCCAAGGAGACGAGATGGTGGTTCCATGATGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

18.42

Weight (kDa)

7.72

Isoelectric Point (pI)

69.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 154	2e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	229
AccII	CGCG	1 cut(s)	98
AciI	CCGC	5 cut(s)	15, 18, 25, 96, 98
AcuI	CTGAAG	3 cut(s)	44, 179, 420
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	4 cut(s)	64, 98, 136, 226
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	4 cut(s)	9, 70, 193, 378
AluI	AGCT	4 cut(s)	9, 70, 193, 378
Alw26I	GTCTC	2 cut(s)	176, 446
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	151, 160, 315
AsuII	TTCGAA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	229
BccI	CCATC	1 cut(s)	453
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	176, 446
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	231, 258, 467
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	96, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 98, 136, 226
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	96, 447
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	64, 98, 136, 226
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	64, 98, 136, 226
BsmAI	GTCTC	2 cut(s)	176, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	409, 440
BspACI	CCGC	5 cut(s)	15, 18, 25, 96, 98
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	231, 258, 467
BspMI	ACCTGC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	96, 447
BssMI	GATC	2 cut(s)	409, 440
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	287, 337, 428
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	96
BstEII	GGTNACC	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	2 cut(s)	412, 443
BstMAI	GTCTC	2 cut(s)	176, 446
BstMBI	GATC	2 cut(s)	409, 440
BstMCI	CGRYCG	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	427
BstUI	CGCG	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	117, 381
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	160
Cfr42I	CCGCGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	331, 470
CviJI	RGCY	6 cut(s)	9, 70, 193, 257, 329, 378
CviKI_1	RGCY	6 cut(s)	9, 70, 193, 257, 329, 378
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	411, 442
DpnII	GATC	2 cut(s)	409, 440
DraI	TTTAAA	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	176
Eco57I	CTGAAG	3 cut(s)	44, 179, 420
Eco91I	GGTNACC	1 cut(s)	321
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoO65I	GGTNACC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	2 cut(s)	334, 473
FaiI	YATR	7 cut(s)	273, 291, 293, 295, 332, 417, 471
FatI	CATG	2 cut(s)	330, 469
FauI	CCCGC	3 cut(s)	32, 91, 103
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	161
HapII	CCGG	1 cut(s)	254
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	334, 473
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	3 cut(s)	151, 160, 315
Hpy188I	TCNGA	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	58, 68
HpyCH4III	ACNGT	3 cut(s)	287, 337, 428
HpyCH4V	TGCA	2 cut(s)	51, 265
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	334, 473
HspAI	GCGC	1 cut(s)	158
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	409, 440
LmnI	GCTCC	5 cut(s)	14, 67, 155, 262, 383
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	3 cut(s)	115, 148, 321
MalI	GATC	2 cut(s)	411, 442
MboI	GATC	2 cut(s)	409, 440
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	440
MnlI	CCTC	7 cut(s)	22, 31, 102, 139, 220, 261, 279
Mph1103I	ATGCAT	1 cut(s)	267
MseI	TTAA	2 cut(s)	87, 105
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	162
MssI	GTTTAAAC	1 cut(s)	106
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	98
NdeII	GATC	2 cut(s)	409, 440
NlaIII	CATG	2 cut(s)	334, 473
NlaIV	GGNNCC	3 cut(s)	231, 258, 467
NmuCI	GTSAC	3 cut(s)	115, 148, 321
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	176
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	19
Ple19I	CGATCG	1 cut(s)	412
PmeI	GTTTAAAC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	231, 258, 467
PsuI	RGATCY	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	87, 105
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	409, 440
ScrFI	CCNGG	1 cut(s)	162
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	427
Sfr303I	CCGCGG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	176
SgrBI	CCGCGG	1 cut(s)	99
SsiI	CCGC	5 cut(s)	15, 18, 25, 96, 98
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	287, 337, 428
TaqI	TCGA	2 cut(s)	176, 201
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	87, 105
Tru9I	TTAA	2 cut(s)	87, 105
TscAI	CASTG	2 cut(s)	124, 388
TseFI	GTSAC	3 cut(s)	115, 148, 321
Tsp45I	GTSAC	3 cut(s)	115, 148, 321
TspRI	CASTG	2 cut(s)	124, 388
XagI	CCTNNNNNAGG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.