Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

21232722 .. 21235456

Gene Structure 2735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1251800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCCTCCGCCTCCGGCCGCAAGACTTTGAGTAAGATTGCGTGCAATCGGCTCCAGAAAGAGCTTCTGGAGTGGCAGGTCAATCCTCCCGCGGGCTTCAAGCACAAAGTCACCGATAATCTCCAAAGGTGGGTGATTGAAGTCAATGGAGCTCCTGGAACTCTCTATTCTAATGAAACCTTTCAGCTTCAGGTCGATTTTCCTGAGCATTACCCAATGGAAGCCCCGCAGGTTATATTTGTCCCTCCAGCTCCACTACATCCTCATATTTATAGCAACGGTCATATTTGTTTAGATATTTTGTACGATTCATGGTCACCAGCCATGACTGTTAGTTCCATCTGTATTAGCATTCTCTCCATGCTATCAAGCTCCACCGTGAAGCAACGCCCGGAAGATAATGATCGGTATGTAAAGAATTGTAGAAATGGCAGATCTCCCAAGGAAACGAGGTGGTGGTTCCATGACGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

18.4

Weight (kDa)

7.72

Isoelectric Point (pI)

65.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 154	1.7e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	73, 226
AccII	CGCG	1 cut(s)	98
AciI	CCGC	5 cut(s)	15, 25, 96, 98, 233
AcoI	YGGCCR	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AgsI	TTSAA	2 cut(s)	106, 146
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	6 cut(s)	9, 70, 158, 193, 257, 378
AluI	AGCT	6 cut(s)	9, 70, 158, 193, 257, 378
Alw21I	GWGCWC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	186
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	109, 151, 315
BanII	GRGCYC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	398
BfuAI	ACCTGC	2 cut(s)	73, 226
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	162, 398
BmiI	GGNNCC	2 cut(s)	59, 467
BmrFI	CCNGG	2 cut(s)	162, 398
BpmI	CTGGAG	3 cut(s)	44, 95, 237
Bpu10I	CCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	96, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	96, 447
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMII	CTCAG	1 cut(s)	201
BseX3I	CGGCCG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	21, 398
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	409, 440
BspACI	CCGC	5 cut(s)	15, 25, 96, 98, 233
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	59, 467
BspMI	ACCTGC	2 cut(s)	73, 226
BssECI	CCNNGG	2 cut(s)	96, 447
BssMI	GATC	2 cut(s)	409, 440
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	287, 337, 385
BstC8I	GCNNGC	2 cut(s)	49, 100
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	96
BstEII	GGTNACC	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	2 cut(s)	412, 443
BstMBI	GATC	2 cut(s)	409, 440
BstMCI	CGRYCG	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	160, 396
BstUI	CGCG	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZI	CGGCCG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	265
BveI	ACCTGC	2 cut(s)	73, 226
Cac8I	GCNNGC	2 cut(s)	49, 100
Cfr42I	CCGCGG	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	4 cut(s)	318, 331, 367, 470
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	411, 442
DpnII	GATC	2 cut(s)	409, 440
EaeI	YGGCCR	1 cut(s)	22
EagI	CGGCCG	1 cut(s)	22
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	158
EclXI	CGGCCG	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	4 cut(s)	321, 334, 370, 473
FaiI	YATR	9 cut(s)	242, 273, 279, 291, 319, 332, 368, 417, 471
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	4 cut(s)	317, 330, 366, 469
FauI	CCCGC	3 cut(s)	91, 103, 240
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
GsuI	CTGGAG	3 cut(s)	44, 95, 237
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	2 cut(s)	21, 398
Hin1II	CATG	4 cut(s)	321, 334, 370, 473
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	21, 398
HphI	GGTGA	3 cut(s)	109, 151, 315
Hpy188III	TCNNGA	3 cut(s)	61, 74, 209
HpyCH4III	ACNGT	3 cut(s)	287, 337, 385
HpyCH4V	TGCA	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	210
Hsp92II	CATG	4 cut(s)	321, 334, 370, 473
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	409, 440
LmnI	GCTCC	6 cut(s)	14, 63, 155, 163, 262, 383
MaeIII	GTNAC	2 cut(s)	115, 321
MalI	GATC	2 cut(s)	411, 442
MboI	GATC	2 cut(s)	409, 440
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	424
MnlI	CCTC	6 cut(s)	22, 28, 102, 261, 279, 450
MroXI	GAANNNNTTC	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	21, 398
MspR9I	CCNGG	2 cut(s)	162, 398
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	98
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	409, 440
NlaIII	CATG	4 cut(s)	321, 334, 370, 473
NlaIV	GGNNCC	2 cut(s)	59, 467
NmuCI	GTSAC	2 cut(s)	115, 321
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	59, 467
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	160
SacII	CCGCGG	1 cut(s)	99
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	409, 440
ScrFI	CCNGG	2 cut(s)	162, 398
SduI	GDGCHC	1 cut(s)	160
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	5 cut(s)	15, 25, 96, 98, 233
SstI	GAGCTC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	160, 396
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	287, 337, 385
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	424
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	115, 321
Tsp45I	GTSAC	2 cut(s)	115, 321
TspDTI	ATGAA	2 cut(s)	195, 306
XmnI	GAANNNNTTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.