Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

33963102 .. 33965659

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G373500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACCAGCTCCTCTGCCGCTTCACGCAAGGCTTTAAGCAAGATCGCCTGCAATCGGCTCCAGAAAGAGCTTGTGGAGTGGCAGGTCAATCCCCCGGCCGGTTTTAAACACAAAGTCACTGATAATCTTCAGAGATGGGTCATCGAAGTCAACGGAGCCCCAGGAACTCTTTACGCCAATGAAACATATCAGCTCCAAGTTGATTTTCCCGAGCATTATCCTATGGAAGCACCACAGGTGATTTTTATCCCTCCAGCTCCTCTGCATCCCCACATTTATAGCAATGGCCATATCTGTCTAGATATTCTATATGATTCATGGTCTCCAGCCATGACTGCTAGTTCCATCTGTATCAGCATTCTCTCCATGTTATCGAGTTCCACTGTGAAGCAACGCCCAGCAGATAATGATCGTTACGTGAAGAACTGCAGGAATGGCAGATCTCCCAAGGAGACGAGATGGTGGTTCCATGATGATAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

8.35

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	1 cut(s)	18
AcoI	YGGCCR	2 cut(s)	96, 286
AcuI	CTGAAG	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	54, 98
AjnI	CCWGG	1 cut(s)	160
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	4 cut(s)	9, 70, 193, 257
AluI	AGCT	4 cut(s)	9, 70, 193, 257
Alw26I	GTCTC	2 cut(s)	327, 446
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	96, 286
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	160
BccI	CCATC	3 cut(s)	129, 353, 453
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	327, 446
BfaI	CTAG	2 cut(s)	299, 339
BfmI	CTRYAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	440
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	95, 162
BmeT110I	CYCGRG	1 cut(s)	209
BmiI	GGNNCC	3 cut(s)	59, 157, 467
BmrFI	CCNGG	2 cut(s)	95, 162
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	3 cut(s)	44, 237, 309
BpuMI	CCSGG	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	2 cut(s)	245, 408
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	93, 160, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 98
Bse118I	RCCGGY	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	2 cut(s)	245, 408
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	93, 160, 447
BseGI	GGATG	1 cut(s)	265
BseJI	GATNNNNATC	2 cut(s)	245, 408
BseLI	CCNNNNNNNGG	2 cut(s)	54, 98
BseMI	GCAATG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	249
BseX3I	CGGCCG	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	397
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 288
BsiEI	CGRYCG	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	2 cut(s)	95, 99
BslI	CCNNNNNNNGG	2 cut(s)	54, 98
BsmAI	GTCTC	2 cut(s)	327, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	98, 288
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	42, 409, 440
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	98, 288
BspLI	GGNNCC	3 cut(s)	59, 157, 467
BspMAI	CTGCAG	1 cut(s)	431
BspMI	ACCTGC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	93, 160, 447
BssMI	GATC	3 cut(s)	42, 409, 440
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	3 cut(s)	45, 412, 443
BstMAI	GTCTC	2 cut(s)	327, 446
BstMBI	GATC	3 cut(s)	42, 409, 440
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 435
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	93, 160
BstSFI	CTRYAG	1 cut(s)	427
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	98, 288
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	2 cut(s)	117, 381
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	98
CviAII	CATG	4 cut(s)	318, 331, 367, 470
DpnI	GATC	3 cut(s)	44, 411, 442
DpnII	GATC	3 cut(s)	42, 409, 440
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	2 cut(s)	96, 286
EagI	CGGCCG	1 cut(s)	96
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	327
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	4 cut(s)	321, 334, 370, 473
FatI	CATG	4 cut(s)	317, 330, 366, 469
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	252
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	299, 339
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	3 cut(s)	44, 237, 309
HaeIII	GGCC	2 cut(s)	98, 288
HapII	CCGG	2 cut(s)	95, 99
Hin1II	CATG	4 cut(s)	321, 334, 370, 473
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	2 cut(s)	95, 99
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	3 cut(s)	61, 209, 299
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	3 cut(s)	51, 265, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 435
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	4 cut(s)	321, 334, 370, 473
Kzo9I	GATC	3 cut(s)	42, 409, 440
LmnI	GCTCC	5 cut(s)	14, 63, 155, 198, 262
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	299, 339
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	2 cut(s)	115, 413
MalI	GATC	3 cut(s)	44, 411, 442
MboI	GATC	3 cut(s)	42, 409, 440
MboII	GAAGA	2 cut(s)	119, 433
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	3 cut(s)	22, 261, 270
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	35, 105
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	2 cut(s)	95, 99
MspR9I	CCNGG	2 cut(s)	95, 162
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	335, 435
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	42, 409, 440
NlaIII	CATG	4 cut(s)	321, 334, 370, 473
NlaIV	GGNNCC	3 cut(s)	59, 157, 467
NmuCI	GTSAC	1 cut(s)	115
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	59, 157, 467
PstI	CTGCAG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	35, 105
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	42, 409, 440
ScrFI	CCNGG	2 cut(s)	95, 162
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	7 cut(s)	11, 72, 87, 195, 240, 259, 420
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	427
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	299, 339
StyD4I	CCNGG	2 cut(s)	93, 160
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	144, 374
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	35, 105
Tru9I	TTAA	2 cut(s)	35, 105
TscAI	CASTG	2 cut(s)	124, 388
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	195, 306
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	124, 388
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	2 cut(s)	299, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.