Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018554.1

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

6943 .. 7683

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018554.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaccagctcctccgcctcctcccgcaagattttgagtaagattgcttgcaatcggctccagaaggagctcgtggagtggcaggtcaatcctccggccggctttaaacacaaagtcactgacaatctccaaaggtgggtgactgaagtgaatggagcccctgggactctctattcgaatgagacctgtcagcttcagaggttgatttccctgagcattacccgatggaagcaccacaggttatctttgtgcctccggctccaatgcatcctcatatttatagcaacggtcatatatgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

9.87

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AciI	CCGC	2 cut(s)	15, 25
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	165, 179
AfiI	CCNNNNNNNGG	2 cut(s)	98, 136
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	9, 70, 193
AluI	AGCT	3 cut(s)	9, 70, 193
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	96
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	72, 160
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	3 cut(s)	59, 157, 260
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	160, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 136
Bse118I	RCCGGY	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 161
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	98, 136
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	10
BseX3I	CGGCCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	95, 99, 256
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	98, 136
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	72, 160
BspACI	CCGC	2 cut(s)	15, 25
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	59, 157, 260
BspMI	ACCTGC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	160, 161
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	49, 100
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	176
BstMCI	CGRYCG	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	49, 100
Cfr10I	RCCGGY	1 cut(s)	98
CviJI	RGCY	8 cut(s)	9, 58, 70, 98, 102, 158, 193, 259
CviKI_1	RGCY	8 cut(s)	9, 58, 70, 98, 102, 158, 193, 259
DdeI	CTNAG	1 cut(s)	212
DraI	TTTAAA	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	96
EagI	CGGCCG	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	72, 160
Eco31I	GGTCTC	1 cut(s)	176
Eco52I	CGGCCG	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	165, 179
EcoICRI	GAGCTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	269
EcoT38I	GRGCYC	2 cut(s)	72, 160
FaiI	YATR	5 cut(s)	275, 281, 293, 295, 297
FaqI	GGGAC	1 cut(s)	178
FauI	CCCGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	2 cut(s)	72, 160
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	95, 99, 256
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	3 cut(s)	95, 99, 256
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	51, 267
HpyF3I	CTNAG	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LmnI	GCTCC	5 cut(s)	14, 63, 67, 155, 264
LweI	GCATC	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	115, 139
MhlI	GDGCHC	2 cut(s)	72, 160
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	22, 28, 31, 102, 192, 263, 281
Mph1103I	ATGCAT	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	98
MseI	TTAA	1 cut(s)	105
MspI	CCGG	3 cut(s)	95, 99, 256
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
NaeI	GCCGGC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	59, 157, 260
NmuCI	GTSAC	2 cut(s)	115, 139
NsiI	ATGCAT	1 cut(s)	269
NspV	TTCGAA	1 cut(s)	176
PasI	CCCWGGG	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	59, 157, 260
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	105
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	72, 160
SetI	ASST	8 cut(s)	11, 72, 87, 137, 188, 195, 203, 242
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	176
SsiI	CCGC	2 cut(s)	15, 25
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	115, 139
Tsp45I	GTSAC	2 cut(s)	115, 139
TspRI	CASTG	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.