Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Reverse (-)

17243987 .. 17245988

Gene Structure 2002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACAAGCTCTTCATCTCCTTCACGCAAGGCGTTAAGCAAGATCGCGTGTAATAGGTTACAAAAGGAGTTATCAGAGTGGCAAGTAAATCCACCGACTGGGTTTAAGCACAGAGTTACTGATAATCTTCAAAAATGGGTAATTGAGGTAACAGGAGCACCTGGTACGCTTTACGCTAATGAAACTTATAATCTTCAGGTTGAGTTTCCTCAACATTATCCTATGGAAGCTCCTCAGGTGATTTTTGTTCCACCAGCACCGTTACATCCTCATATTTACAGCAATGGACATATTTGTTTAGATATTCTGTATGACTCATGGTCTCCAGCAATGACAGTGAGTTCAGTCTGCATCAGCATCCTCTCAATGCTATCAAGTTCCCCCGAAAAGCAACGCCCGACTGATAACGATCGATATGTGAAGAACTGCAAGAACGGGAGGTCTCCTAAAGAGACAAGGTGGTGGTTCCATGACGACAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.37

Weight (kDa)

8.34

Isoelectric Point (pI)

70.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 154	1.3e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccII	CGCG	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	131
AhdI	GACNNNNNGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	9, 230
AluI	AGCT	2 cut(s)	9, 230
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	3 cut(s)	327, 446, 447
AsuHPI	GGTGA	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	327, 446, 447
Bme1390I	CCNGG	1 cut(s)	162
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	360, 366
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	309
Bsa29I	ATCGAT	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	327, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	2 cut(s)	289, 336
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	412
BseGI	GGATG	2 cut(s)	265, 357
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	2 cut(s)	289, 336
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	327, 446, 447
Bso31I	GGTCTC	2 cut(s)	327, 447
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	42, 409
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	16
BspTNI	GGTCTC	2 cut(s)	327, 447
BsrDI	GCAATG	2 cut(s)	289, 336
BsrI	ACTGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	42, 409
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	261, 337
Bst6I	CTCTTC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	265, 357
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	45, 412
BstMAI	GTCTC	3 cut(s)	327, 446, 447
BstMBI	GATC	2 cut(s)	42, 409
BstMCI	CGRYCG	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	47
Bsu15I	ATCGAT	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	265, 357
BtsIMutI	CAGTG	1 cut(s)	342
ClaI	ATCGAT	1 cut(s)	412
CsiI	ACCWGGT	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	318, 470
CviJI	RGCY	2 cut(s)	9, 230
CviKI_1	RGCY	2 cut(s)	9, 230
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	44, 411
DpnII	GATC	2 cut(s)	42, 409
DriI	GACNNNNNGTC	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	16
Eco31I	GGTCTC	2 cut(s)	327, 447
Eco57I	CTGAAG	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	321, 473
FaiI	YATR	8 cut(s)	189, 224, 273, 291, 312, 319, 417, 471
FatI	CATG	2 cut(s)	317, 469
FokI	GGATG	2 cut(s)	252, 344
GsuI	CTGGAG	1 cut(s)	309
Hin1II	CATG	2 cut(s)	321, 473
HinfI	GANTC	1 cut(s)	314
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	261, 337
HpyCH4V	TGCA	2 cut(s)	351, 429
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	321, 473
Kzo9I	GATC	2 cut(s)	42, 409
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	155, 235
LpnPI	CCDG	8 cut(s)	84, 138, 147, 174, 182, 221, 267, 339
LweI	GCATC	2 cut(s)	360, 366
MabI	ACCWGGT	1 cut(s)	160
MaeIII	GTNAC	4 cut(s)	57, 115, 148, 261
MalI	GATC	2 cut(s)	44, 411
MboI	GATC	2 cut(s)	42, 409
MboII	GAAGA	4 cut(s)	3, 119, 185, 433
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	6 cut(s)	139, 219, 243, 279, 371, 432
MseI	TTAA	3 cut(s)	35, 105, 484
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	47
NdeII	GATC	2 cut(s)	42, 409
NlaIII	CATG	2 cut(s)	321, 473
NlaIV	GGNNCC	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	16
PflMI	CCANNNNNTGG	1 cut(s)	98
Ple19I	CGATCG	1 cut(s)	412
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	412
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	35, 105, 484
Sau3AI	GATC	2 cut(s)	42, 409
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	160
SexAI	ACCWGGT	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	360, 366
Sse9I	AATT	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	261, 337
TaqI	TCGA	1 cut(s)	412
TasI	AATT	1 cut(s)	141
Tru1I	TTAA	3 cut(s)	35, 105, 484
Tru9I	TTAA	3 cut(s)	35, 105, 484
TscAI	CASTG	1 cut(s)	342
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.