Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002741

Physical Location & Seq

Genomic Coordinates Forward (+)

17201922 .. 17202988

Gene Structure 1067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACGAGTTCTTCTGAATCAACTCGCAAGGGTCTGACCAAAATCGCCACGAACCGGTTGCAGAAAGAGTTCATGGAGTGGCAAACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCTCCACAGGTTATCTTTCAGCATCCAGCTCCACTTCATCCTCATATTTACAGCAACGGTCACATTTGTTTAGATGTCTTGTATGATTCGTGGTCACCGGCGATGAGACTAAGTTCCATCTGTCTCAGCATTCTCTCAATGCTCTCCAGCTCATCCGTGAAGCAAAAGCCGAAAGACAATGACCATTACTTGAAAAACTGCAAACATGGAAGATCTCCCAAAGAAACTAGGTGGCGTTTCCATGACGATAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

161

Amino Acids

18.67

Weight (kDa)

8.76

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	19 - 155	6.8e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45050 AT1G45050 AT1G75440 AT4G36410 AT5G42990
fragaria_vesca	FvH4_1g12300 FvH4_2g39250
malus_domestica	MD02G1138000.v1.1 MD08G1024100.v1.1 MD15G1021700.v1.1 MD15G1251800.v1.1
prunus_persica	Prupe.1G373500_v2.0.a1 Prupe.1G373500_v2.0.a1 Prupe.7G162600_v2.0.a1
pyrus_communis	pycom02g10940 pycom08g01890 pycom15g01800
rosa_chinensis	RchiOBHm_Chr2g0100121 RchiOBHm_Chr6g0301761
rosa_laevigata	RLG00000011224 RLG00000016938
rosa_multiflora	Rmu_sc0018554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142550 Rroxscaffold_7G00166430
rosa_rugosa	Rorug02G0085800 Rorug06G0309300 Rorug06G0309300 Rorug06G0309400 Rorug06G0309500
rosa_samantha	Rh2AG134500 Rh2BG138200 Rh2CG140000 Rh2DG140200 Rh6AG421300 Rh6BG428000 Rh6CG434600 Rh6DG421500
rosa_wichuraiana	Rw2G010510 Rw6G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	54, 98
AgeI	ACCGGT	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	106, 146, 197, 421
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	230, 257, 378
AluI	AGCT	3 cut(s)	230, 257, 378
Alw26I	GTCTC	3 cut(s)	121, 328, 356
AlwI	GGATC	1 cut(s)	146
AsiGI	ACCGGT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	315
BccI	CCATC	2 cut(s)	129, 353
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	121, 328, 356
BfaI	CTAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 98
Bse118I	RCCGGY	2 cut(s)	54, 325
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	250, 265, 380
BseLI	CCNNNNNNNGG	2 cut(s)	54, 98
BseMII	CTCAG	2 cut(s)	201, 367
BshTI	ACCGGT	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	55, 326
BslI	CCNNNNNNNGG	2 cut(s)	54, 98
BsmAI	GTCTC	3 cut(s)	121, 328, 356
BsmI	GAATGC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	138, 440
BspCNI	CTCAG	2 cut(s)	202, 366
BspPI	GGATC	1 cut(s)	146
BsrFI	RCCGGY	2 cut(s)	54, 325
BssAI	RCCGGY	2 cut(s)	54, 325
BssMI	GATC	2 cut(s)	138, 440
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	210, 338, 353
BstEII	GGTNACC	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	250, 265, 380
BstKTI	GATC	2 cut(s)	141, 443
BstMAI	GTCTC	3 cut(s)	121, 328, 356
BstMBI	GATC	2 cut(s)	138, 440
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	3 cut(s)	250, 265, 380
Cfr10I	RCCGGY	2 cut(s)	54, 325
CspAI	ACCGGT	1 cut(s)	54
CviAII	CATG	4 cut(s)	73, 152, 434, 470
CviJI	RGCY	4 cut(s)	230, 257, 378, 397
CviKI_1	RGCY	4 cut(s)	230, 257, 378, 397
DdeI	CTNAG	3 cut(s)	210, 338, 353
DpnI	GATC	2 cut(s)	140, 442
DpnII	GATC	2 cut(s)	138, 440
Eco91I	GGTNACC	1 cut(s)	321
EcoO65I	GGTNACC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	76, 155, 437, 473
FaiI	YATR	8 cut(s)	74, 153, 224, 273, 312, 435, 471, 484
FatI	CATG	4 cut(s)	72, 151, 433, 469
FokI	GGATG	3 cut(s)	237, 252, 367
FspBI	CTAG	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	358
HapII	CCGG	2 cut(s)	55, 326
Hin1II	CATG	4 cut(s)	76, 155, 437, 473
HinfI	GANTC	3 cut(s)	17, 114, 314
HpaII	CCGG	2 cut(s)	55, 326
HphI	GGTGA	1 cut(s)	315
Hpy188I	TCNGA	3 cut(s)	16, 36, 121
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4V	TGCA	3 cut(s)	61, 151, 429
HpyF3I	CTNAG	3 cut(s)	210, 338, 353
Hsp92II	CATG	4 cut(s)	76, 155, 437, 473
Kzo9I	GATC	2 cut(s)	138, 440
LmnI	GCTCC	2 cut(s)	235, 262
LpnPI	CCDG	9 cut(s)	68, 84, 147, 174, 221, 222, 267, 339, 388
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	287, 321
MalI	GATC	2 cut(s)	140, 442
MboI	GATC	2 cut(s)	138, 440
MboII	GAAGA	2 cut(s)	3, 450
MflI	RGATCY	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	102, 279
MroXI	GAANNNNTTC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	2 cut(s)	55, 326
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	138, 440
NlaIII	CATG	4 cut(s)	76, 155, 437, 473
NmuCI	GTSAC	2 cut(s)	287, 321
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	17, 314
PfoI	TCCNGGA	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	54
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	138, 440
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	232, 240, 259, 380, 461
SfaNI	GCATC	1 cut(s)	259
SgrAI	CRCCGGYG	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	146
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	17, 314
TseFI	GTSAC	2 cut(s)	287, 321
Tsp45I	GTSAC	2 cut(s)	287, 321
TspDTI	ATGAA	3 cut(s)	61, 195, 254
TspGWI	ACGGA	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.