Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003789

Physical Location & Seq

Genomic Coordinates Forward (+)

17335751 .. 17339275

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTGATGGAAGTTACAGAGACTGAGCGATGGTGCGTTGTAACTGGTGGTAGAGGATTCGCTGCAAGACATCTTGTAGAAATGCTCGTACGTTACCAAATGTTCCACGTTCGTATCGCCGATTTAGCTCCTGCGATAGTGCTCAATCCTCACGAGGAAACTGGAATTCTCGGTGAAGCAATTAGATCCGGTAGAGTTCAATACGTCTCCGCTGATCTTCGGAACAAAACTCAAGTTGTCAAAGGTTTTCAAGGAGCAGAAGTGGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTAATGTTCAAGGGACAACAAATGTAATTGATGCTTGTATTGAGGTTGGAGTAAAGAGGCTAATCTATACAAGTTCTCCGAGTGTTGTGTTTGACGGGGTCCATGGTACTTTGAATGCTGATGAATCACTGCCGTATCCACCTAAGCATAATGATTCATATTCAGCTACTAAAGCTGAAGGGGAAGCTTTGATTTTGAAAGCGAATGGAAGAAGTGGACTACTCACTTGTTGCATACGTCCTAGCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCTTGTTACTGCTGCCAGGGCTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACTTCTATGATTTCACTTATGTTGAAAATGTTGTGCACGCCCATGTCTGTGCTGAGCGAGCTCTAGCATCAGGAGGAGAAGTATGTGCAAAAGCTGCTGGCCAGGCTTACTTCATTACCAACATGGAGCCAATTAAATTTTGGGAGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGAGAGGCCAAGTATAAAGATACCTGCAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAGCATATAAATTACTCGGACCGTATGGGATGAAAGTACCAGTGCTAACACCTTCTAGGGTTAGGCTACTCTCTTGCAACAGAACATTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATTCTCCTGTTGTCCCACTTCAGGAAGGTATAAAGAGGACAATAGATTCATTCTCACACTTGAAAGCTCAAAATCAACCCAAAACAGAAGAGAAAATGAAAGTGTTCGGGAGCAAGAAGATCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0047012 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

382

Amino Acids

41.91

Weight (kDa)

8.69

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	13 - 288	2.3e-75	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	13 - 245	4.2e-34	NAD dependent epimerase/dehydratase family
Polysacc_synt_2	PF02719	13 - 133	2.5e-08	Polysaccharide biosynthesis protein
NmrA	PF05368	13 - 133	6.6e-08	NmrA-like family
GDP_Man_Dehyd	PF16363	14 - 238	9.3e-19	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	14 - 212	5.1e-14	Male sterility protein
NAD_binding_10	PF13460	16 - 153	8.2e-10	NAD(P)H-binding
RmlD_sub_bind	PF04321	70 - 276	1.9e-10	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47290 AT1G47290 AT2G26260 AT2G26260
fragaria_vesca	FvH4_2g36970 FvH4_2g36970
malus_domestica	MD08G1046500.v1.1
prunus_persica	Prupe.1G401700_v2.0.a1 Prupe.1G401700_v2.0.a1
pyrus_communis	pycom08g03860 pycom15g04580 pycom15g04640
rosa_chinensis	RchiOBHm_Chr4g0406951 RchiOBHm_Chr6g0304791
rosa_laevigata	RLG00000008747 RLG00000010949
rosa_multiflora	Rmu_sc0000600.1_g000025 Rmu_sc0003120.1_g000003
rosa_roxburghii	Rroxscaffold_7G00163470
rosa_rugosa	Rorug03G0259800 Rorug04G0075400 Rorug06G0334600 Rorug06G0334600 Rorug06G0334700 Rorug06G0334800
rosa_samantha	Rh4AG141600 Rh4BG138400 Rh4DG135500 Rh6AG446500 Rh6BG455100 Rh6CG460000 Rh6DG446800
rosa_wichuraiana	Rw4G011530 Rw6G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	871
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	2 cut(s)	180, 1017
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	165, 797
AcuI	CTGAAG	3 cut(s)	296, 519, 1025
AfaI	GTAC	4 cut(s)	90, 317, 430, 939
AfiI	CCNNNNNNNGG	2 cut(s)	627, 1042
AgsI	TTSAA	9 cut(s)	200, 251, 332, 436, 520, 686, 827, 999, 1084
AjnI	CCWGG	3 cut(s)	580, 620, 762
Alw21I	GWGCWC	3 cut(s)	144, 699, 724
Alw26I	GTCTC	3 cut(s)	14, 211, 875
Alw44I	GTGCAC	1 cut(s)	695
AlwI	GGATC	2 cut(s)	180, 1017
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	760, 845
ApaLI	GTGCAC	1 cut(s)	695
ApeKI	GCWGC	5 cut(s)	62, 278, 567, 617, 755
ApoI	RAATTY	2 cut(s)	165, 797
AseI	ATTAAT	1 cut(s)	593
Asp700I	GAANNNNTTC	1 cut(s)	1124
AspS9I	GGNCC	3 cut(s)	421, 578, 920
AsuHPI	GGTGA	5 cut(s)	16, 185, 296, 596, 662
AvaII	GGWCC	3 cut(s)	421, 578, 920
BaeGI	GKGCMC	1 cut(s)	699
BaeI	ACNNNNGTAYC	4 cut(s)	97, 130, 440, 473
BalI	TGGCCA	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	724
BauI	CACGAG	1 cut(s)	152
Bbv12I	GWGCWC	3 cut(s)	144, 699, 724
BbvI	GCAGC	5 cut(s)	49, 290, 579, 604, 742
BccI	CCATC	3 cut(s)	24, 610, 647
BceAI	ACGGC	1 cut(s)	439
BcgI	CGANNNNNNTGC	1 cut(s)	1123
BciT130I	CCWGG	3 cut(s)	582, 622, 764
BciVI	GTATCC	1 cut(s)	468
BcoDI	GTCTC	3 cut(s)	14, 211, 875
BfaI	CTAG	4 cut(s)	564, 725, 902, 957
BfuAI	ACCTGC	1 cut(s)	871
BfuI	GTATCC	1 cut(s)	468
BisI	GCNGC	5 cut(s)	63, 279, 568, 618, 756
BlpI	GCTNAGC	1 cut(s)	714
BlsI	GCNGC	5 cut(s)	64, 280, 569, 619, 757
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	582, 622, 764
Bme18I	GGWCC	3 cut(s)	421, 578, 920
BmgT120I	GGNCC	3 cut(s)	421, 578, 920
BmiI	GGNNCC	3 cut(s)	422, 600, 789
BmrFI	CCNGG	3 cut(s)	582, 622, 764
BmsI	GCATC	3 cut(s)	343, 737, 867
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	424, 621
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	8 cut(s)	246, 276, 382, 412, 726, 756, 797, 827
Bsc4I	CCNNNNNNNGG	2 cut(s)	627, 1042
Bse1I	ACTGG	3 cut(s)	49, 166, 941
BseBI	CCWGG	3 cut(s)	582, 622, 764
BseCI	ATCGAT	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	424, 621
BseGI	GGATG	1 cut(s)	936
BseLI	CCNNNNNNNGG	2 cut(s)	627, 1042
BseMII	CTCAG	3 cut(s)	15, 333, 705
BseNI	ACTGG	3 cut(s)	49, 166, 941
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	5 cut(s)	49, 290, 579, 604, 742
BseYI	CCCAGC	1 cut(s)	626
BshFI	GGCC	2 cut(s)	762, 847
BshVI	ATCGAT	1 cut(s)	293
BsiHKAI	GWGCWC	3 cut(s)	144, 699, 724
BsiSI	CCGG	1 cut(s)	189
BsiWI	CGTACG	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	349, 1019
BslI	CCNNNNNNNGG	2 cut(s)	627, 1042
BsmAI	GTCTC	3 cut(s)	14, 211, 875
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	349, 1019
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	762, 847
Bsp1286I	GDGCHC	3 cut(s)	144, 699, 724
Bsp143I	GATC	4 cut(s)	185, 214, 1009, 1140
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	2 cut(s)	762, 847
BspCNI	CTCAG	3 cut(s)	16, 332, 706
BspDI	ATCGAT	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	422, 600, 789
BspMI	ACCTGC	1 cut(s)	871
BspPI	GGATC	2 cut(s)	180, 1017
BsrI	ACTGG	3 cut(s)	49, 166, 941
BssECI	CCNNGG	2 cut(s)	424, 621
BssMI	GATC	4 cut(s)	185, 214, 1009, 1140
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	424
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	582, 622, 764
Bst4CI	ACNGT	1 cut(s)	924
Bst6I	CTCTTC	1 cut(s)	1104
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	699, 720, 760
BstDEI	CTNAG	4 cut(s)	24, 319, 465, 714
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	936
BstKTI	GATC	4 cut(s)	188, 217, 1012, 1143
BstMAI	GTCTC	3 cut(s)	14, 211, 875
BstMBI	GATC	4 cut(s)	185, 214, 1009, 1140
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 494, 623, 719, 755, 764
BstNI	CCWGG	3 cut(s)	582, 622, 764
BstSCI	CCNGG	3 cut(s)	580, 620, 762
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	5 cut(s)	49, 290, 579, 604, 742
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	293
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	762, 847
BsuTUI	ATCGAT	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	424
BtgZI	GCGATG	2 cut(s)	43, 588
BtsCI	GGATG	1 cut(s)	936
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	449, 948
BveI	ACCTGC	1 cut(s)	871
Cac8I	GCNNGC	3 cut(s)	699, 720, 760
CaiI	CAGNNNCTG	1 cut(s)	23
CciI	TCATGA	1 cut(s)	873
Cfr13I	GGNCC	3 cut(s)	421, 578, 920
ClaI	ATCGAT	1 cut(s)	293
CpoI	CGGWCCG	1 cut(s)	920
Csp6I	GTAC	4 cut(s)	89, 316, 429, 938
CspI	CGGWCCG	1 cut(s)	920
CviAII	CATG	4 cut(s)	425, 704, 784, 874
CviQI	GTAC	4 cut(s)	89, 316, 429, 938
DdeI	CTNAG	4 cut(s)	24, 319, 465, 714
DpnI	GATC	4 cut(s)	187, 216, 1011, 1142
DpnII	GATC	4 cut(s)	185, 214, 1009, 1140
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	1104
EarI	CTCTTC	1 cut(s)	1104
Ecl136II	GAGCTC	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	724
Eco47I	GGWCC	3 cut(s)	421, 578, 920
Eco53kI	GAGCTC	1 cut(s)	722
Eco57I	CTGAAG	3 cut(s)	296, 519, 1025
EcoICRI	GAGCTC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	580, 620, 762
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	4 cut(s)	428, 707, 787, 877
FaqI	GGGAC	2 cut(s)	349, 1019
FatI	CATG	4 cut(s)	424, 703, 783, 873
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	63, 279, 568, 618, 756
FokI	GGATG	1 cut(s)	943
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	5 cut(s)	63, 279, 568, 618, 756
FspBI	CTAG	4 cut(s)	564, 725, 902, 957
GluI	GCNGC	5 cut(s)	63, 279, 568, 618, 756
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	762, 847
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	4 cut(s)	428, 707, 787, 877
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	6 cut(s)	57, 287, 446, 476, 992, 1067
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	5 cut(s)	16, 185, 296, 596, 662
Hpy166II	GTNNAC	2 cut(s)	539, 697
Hpy188I	TCNGA	3 cut(s)	222, 402, 920
Hpy188III	TCNNGA	7 cut(s)	152, 284, 732, 824, 874, 1043, 1129
Hpy8I	GTNNAC	2 cut(s)	539, 697
HpyAV	CCTTC	4 cut(s)	494, 821, 963, 1040
HpyCH4III	ACNGT	1 cut(s)	924
HpyCH4IV	ACGT	4 cut(s)	91, 108, 204, 559
HpyCH4V	TGCA	6 cut(s)	65, 555, 697, 749, 866, 978
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 494, 623, 719, 755, 764
HpyF3I	CTNAG	4 cut(s)	24, 319, 465, 714
HpySE526I	ACGT	4 cut(s)	91, 108, 204, 559
Hsp92II	CATG	4 cut(s)	428, 707, 787, 877
Kzo9I	GATC	4 cut(s)	185, 214, 1009, 1140
LmnI	GCTCC	5 cut(s)	133, 254, 286, 787, 1131
Lsp1109I	GCAGC	5 cut(s)	49, 290, 579, 604, 742
LweI	GCATC	3 cut(s)	343, 737, 867
MaeI	CTAG	4 cut(s)	564, 725, 902, 957
MaeII	ACGT	4 cut(s)	91, 108, 204, 559
MaeIII	GTNAC	6 cut(s)	13, 40, 92, 610, 659, 813
MalI	GATC	4 cut(s)	187, 216, 1011, 1142
MboI	GATC	4 cut(s)	185, 214, 1009, 1140
MboII	GAAGA	4 cut(s)	209, 543, 987, 1121
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	3 cut(s)	144, 699, 724
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	7 cut(s)	165, 180, 348, 590, 792, 797, 911
MluNI	TGGCCA	1 cut(s)	762
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	47, 148, 159, 358, 372, 728, 837, 1050
Mox20I	TGGCCA	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	1124
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	4 cut(s)	297, 324, 593, 795
MslI	CAYNNNNRTG	2 cut(s)	702, 708
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	3 cut(s)	582, 622, 764
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	3 cut(s)	582, 622, 764
MwoI	GCNNNNNNNGC	6 cut(s)	125, 494, 623, 719, 755, 764
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	4 cut(s)	185, 214, 1009, 1140
NlaIII	CATG	4 cut(s)	428, 707, 787, 877
NlaIV	GGNNCC	3 cut(s)	422, 600, 789
NmuCI	GTSAC	1 cut(s)	813
PagI	TCATGA	1 cut(s)	873
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	1124
PfeI	GAWTC	6 cut(s)	57, 287, 446, 476, 992, 1067
Pfl23II	CGTACG	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	5 cut(s)	64, 280, 569, 619, 757
PshBI	ATTAAT	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	724
Psp6I	CCWGG	3 cut(s)	580, 620, 762
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	3 cut(s)	580, 620, 762
PspLI	CGTACG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	422, 600, 789
PspPI	GGNCC	3 cut(s)	421, 578, 920
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	419
RsaI	GTAC	4 cut(s)	90, 317, 430, 939
RsaNI	GTAC	4 cut(s)	89, 316, 429, 938
RseI	CAYNNNNRTG	2 cut(s)	702, 708
Rsr2I	CGGWCCG	1 cut(s)	920
RsrII	CGGWCCG	1 cut(s)	920
SacI	GAGCTC	1 cut(s)	724
SaqAI	TTAA	4 cut(s)	297, 324, 593, 795
SatI	GCNGC	5 cut(s)	63, 279, 568, 618, 756
Sau3AI	GATC	4 cut(s)	185, 214, 1009, 1140
Sau96I	GGNCC	3 cut(s)	421, 578, 920
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	582, 622, 764
SduI	GDGCHC	3 cut(s)	144, 699, 724
SfaNI	GCATC	3 cut(s)	343, 737, 867
SinI	GGWCC	3 cut(s)	421, 578, 920
SmiMI	CAYNNNNRTG	2 cut(s)	702, 708
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	7 cut(s)	165, 180, 348, 590, 792, 797, 911
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	4 cut(s)	564, 725, 902, 957
SstI	GAGCTC	1 cut(s)	724
StyD4I	CCNGG	3 cut(s)	580, 620, 762
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	924
TaiI	ACGT	4 cut(s)	94, 111, 207, 562
TaqI	TCGA	2 cut(s)	293, 1143
TasI	AATT	7 cut(s)	165, 180, 348, 590, 792, 797, 911
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	6 cut(s)	57, 287, 446, 476, 992, 1067
Tru1I	TTAA	4 cut(s)	297, 324, 593, 795
Tru9I	TTAA	4 cut(s)	297, 324, 593, 795
TscAI	CASTG	2 cut(s)	456, 948
TseFI	GTSAC	1 cut(s)	813
TseI	GCWGC	5 cut(s)	62, 278, 567, 617, 755
Tsp45I	GTSAC	1 cut(s)	813
TspDTI	ATGAA	9 cut(s)	260, 279, 459, 468, 631, 763, 947, 1059, 1133
TspRI	CASTG	2 cut(s)	456, 948
Tth111I	GACNNNGTC	1 cut(s)	419
VneI	GTGCAC	1 cut(s)	695
VpaK11BI	GGWCC	3 cut(s)	421, 578, 920
VspI	ATTAAT	1 cut(s)	593
XapI	RAATTY	2 cut(s)	165, 797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	1124
XspI	CTAG	4 cut(s)	564, 725, 902, 957
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.