Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003789

Physical Location & Seq

Genomic Coordinates Reverse (-)

24981704 .. 24982191

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0259800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTCACTCTGAAATATCCAAGAAGATCTGCGTCAACTTCTTTCCCTGCCAAGAACATATCTGAGGCACAGATGTGCAAGTCTACAAGTAGCTCAAGAGTCAAGATTATGCACACCCATCAGGTCATGGCATTAGCTGTTACAGAAGTAGCAGCAACAACAACGTTAACCTCATTGCCAAAGCCAAATAACACCGGCAAGATCCTAGTTACTGTCATCAGCTACAAGGACTGGTCACCCCAAGATGATGGCATTGAGGTTATCTTGTCTCCAACTGAAATACATTCAACAAAGGAAGATACGGATGCACCCAGCAATGCTGTGCTGAGTCTTGTCTATGGTTCTACTACAAGAAGAAGATTGCCACTGTTTGCTGAAATTTGCCCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0047012 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

130

Amino Acids

14.26

Weight (kDa)

8.62

Isoelectric Point (pI)

67.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47290 AT1G47290 AT2G26260 AT2G26260
fragaria_vesca	FvH4_2g36970 FvH4_2g36970
malus_domestica	MD08G1046500.v1.1
prunus_persica	Prupe.1G401700_v2.0.a1 Prupe.1G401700_v2.0.a1
pyrus_communis	pycom08g03860 pycom15g04580 pycom15g04640
rosa_chinensis	RchiOBHm_Chr4g0406951 RchiOBHm_Chr6g0304791
rosa_laevigata	RLG00000008747 RLG00000010949
rosa_multiflora	Rmu_sc0000600.1_g000025 Rmu_sc0003120.1_g000003
rosa_roxburghii	Rroxscaffold_7G00163470
rosa_rugosa	Rorug03G0259800 Rorug04G0075400 Rorug06G0334600 Rorug06G0334600 Rorug06G0334700 Rorug06G0334800
rosa_samantha	Rh4AG141600 Rh4BG138400 Rh4DG135500 Rh6AG446500 Rh6BG455100 Rh6CG460000 Rh6DG446800
rosa_wichuraiana	Rw4G011530 Rw6G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	378
AgsI	TTSAA	1 cut(s)	288
AleI	CACNNNNGTG	1 cut(s)	73
AluBI	AGCT	3 cut(s)	93, 137, 222
AluI	AGCT	3 cut(s)	93, 137, 222
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	126, 242
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	206
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	79
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	173, 322
BseGI	GGATG	1 cut(s)	310
BseMI	GCAATG	2 cut(s)	173, 322
BseMII	CTCAG	3 cut(s)	54, 317, 378
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	164
BseYI	CCCAGC	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	26, 201
BspCNI	CTCAG	3 cut(s)	55, 318, 379
BspPI	GGATC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	173, 322
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	2 cut(s)	26, 201
Bst4CI	ACNGT	2 cut(s)	214, 369
BstDEI	CTNAG	3 cut(s)	63, 326, 387
BstEII	GGTNACC	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	29, 204
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	26, 201
BstPI	GGTNACC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	26, 201
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	26, 201
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	1 cut(s)	21
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	4 cut(s)	93, 137, 184, 222
CviKI_1	RGCY	4 cut(s)	93, 137, 184, 222
DdeI	CTNAG	3 cut(s)	63, 326, 387
DpnI	GATC	2 cut(s)	28, 203
DpnII	GATC	2 cut(s)	26, 201
Eco91I	GGTNACC	1 cut(s)	234
EcoO65I	GGTNACC	1 cut(s)	234
FaeI	CATG	1 cut(s)	130
FaiI	YATR	4 cut(s)	59, 110, 128, 339
FatI	CATG	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	315
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	2 cut(s)	36, 168
HindII	GTYRAC	2 cut(s)	36, 168
HinfI	GANTC	2 cut(s)	99, 328
HpaI	GTTAAC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	4 cut(s)	6, 36, 84, 168
Hpy188I	TCNGA	2 cut(s)	12, 64
Hpy188III	TCNNGA	2 cut(s)	96, 103
Hpy8I	GTNNAC	4 cut(s)	6, 36, 84, 168
HpyCH4III	ACNGT	2 cut(s)	214, 369
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	78, 112, 308
HpyF3I	CTNAG	3 cut(s)	63, 326, 387
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	26, 201
LpnPI	CCDG	5 cut(s)	60, 107, 208, 217, 325
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	139, 208, 234
MalI	GATC	2 cut(s)	28, 203
MboI	GATC	2 cut(s)	26, 201
MboII	GAAGA	4 cut(s)	36, 308, 366, 369
MflI	RGATCY	2 cut(s)	26, 201
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	2 cut(s)	108, 337
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	3 cut(s)	58, 181, 250
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	73
MspI	CCGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	26, 201
NlaIII	CATG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	234
OliI	CACNNNNGTG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	107, 336
PpsI	GAGTC	2 cut(s)	107, 336
Psp1406I	AACGTT	1 cut(s)	164
PspEI	GGTNACC	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	26, 201
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	26, 201
SchI	GAGTC	2 cut(s)	108, 337
SetI	ASST	7 cut(s)	95, 126, 139, 167, 173, 224, 261
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	214, 369
TaiI	ACGT	1 cut(s)	167
TasI	AATT	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	372
XapI	RAATTY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.