Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003789

Physical Location & Seq

Genomic Coordinates Reverse (-)

11622603 .. 11625471

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATAAAGGGACTCAGAAGGTACCCGGATCCAGTTCTATTGGAAGTTAATGGAGTGATTCATGAATTTACCTCCGGTGGTGATACTGATACACACAGAGAGAAGAGCCATATTTCATTGATGTTGCAAAAAATAAACAGCAGACTCAGAGATGCTGGTCATGTTCCTGATTTGGACAATGTCCTGCTTGATGTTGATTTGAAGGAGCAAGAGTTCTTGCTCGGTCGACATAGTGAGAAAGTGGCCATAGCTTTTGAGCTTATAGGTACAGGGCAAGGAATTCCAATTCGTGTGGTGAAGAATCTGAGAATGTGTTCTGATTGTCACTCTTTTGCCAAATTAGTGGAAAGAATATACGAAAGGGAAATAATTGTTCCAGATAACAACAGGTACAAGGACCCAACAAATGCAGATGATCTGATAGTCAGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0047012 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

145

Amino Acids

16.53

Weight (kDa)

6.06

Isoelectric Point (pI)

23.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	53 - 132	1e-25	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47290 AT1G47290 AT2G26260 AT2G26260
fragaria_vesca	FvH4_2g36970 FvH4_2g36970
malus_domestica	MD08G1046500.v1.1
prunus_persica	Prupe.1G401700_v2.0.a1 Prupe.1G401700_v2.0.a1
pyrus_communis	pycom08g03860 pycom15g04580 pycom15g04640
rosa_chinensis	RchiOBHm_Chr4g0406951 RchiOBHm_Chr6g0304791
rosa_laevigata	RLG00000008747 RLG00000010949
rosa_multiflora	Rmu_sc0000600.1_g000025 Rmu_sc0003120.1_g000003
rosa_roxburghii	Rroxscaffold_7G00163470
rosa_rugosa	Rorug03G0259800 Rorug04G0075400 Rorug06G0334600 Rorug06G0334600 Rorug06G0334700 Rorug06G0334800
rosa_samantha	Rh4AG141600 Rh4BG138400 Rh4DG135500 Rh6AG446500 Rh6BG455100 Rh6CG460000 Rh6DG446800
rosa_wichuraiana	Rw4G011530 Rw6G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	226
AclWI	GGATC	2 cut(s)	23, 36
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	65, 279
AfaI	GTAC	3 cut(s)	23, 268, 392
AgsI	TTSAA	1 cut(s)	202
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	2 cut(s)	251, 259
AluI	AGCT	2 cut(s)	251, 259
AlwI	GGATC	2 cut(s)	23, 36
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	2 cut(s)	65, 279
Asp700I	GAANNNNTTC	1 cut(s)	313
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	92, 307
AvaII	GGWCC	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	245
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	23, 30, 399
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bse1I	ACTGG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	28, 160, 296
BseNI	ACTGG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	21
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	26, 75
BslFI	GGGAC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	28, 415
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	3 cut(s)	27, 159, 297
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	23, 30, 399
BspPI	GGATC	2 cut(s)	23, 36
BspQI	GCTCTTC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	28, 415
Bst6I	CTCTTC	1 cut(s)	98
BstDEI	CTNAG	3 cut(s)	14, 146, 305
BstKTI	GATC	2 cut(s)	31, 418
BstMBI	GATC	2 cut(s)	28, 415
BstMCI	CGRYCG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	245
CciI	TCATGA	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	22, 267, 391
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	2 cut(s)	62, 161
CviJI	RGCY	5 cut(s)	108, 245, 251, 259, 432
CviKI_1	RGCY	5 cut(s)	108, 245, 251, 259, 432
CviQI	GTAC	3 cut(s)	22, 267, 391
DdeI	CTNAG	3 cut(s)	14, 146, 305
DpnI	GATC	2 cut(s)	30, 417
DpnII	GATC	2 cut(s)	28, 415
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	279
FaeI	CATG	2 cut(s)	65, 164
FaiI	YATR	7 cut(s)	63, 111, 162, 231, 248, 263, 355
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	2 cut(s)	61, 160
FblI	GTMKAC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	2 cut(s)	26, 75
Hin1II	CATG	2 cut(s)	65, 164
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	4 cut(s)	12, 58, 144, 301
HpaII	CCGG	2 cut(s)	26, 75
HphI	GGTGA	2 cut(s)	92, 307
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	6 cut(s)	17, 149, 306, 319, 420, 428
Hpy188III	TCNNGA	3 cut(s)	62, 167, 377
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	12, 196
HpyCH4V	TGCA	2 cut(s)	127, 410
HpyF3I	CTNAG	3 cut(s)	14, 146, 305
Hsp92II	CATG	2 cut(s)	65, 164
KpnI	GGTACC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	28, 415
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	39, 45, 88, 141, 180, 197, 255, 373, 390
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	30, 417
MboI	GATC	2 cut(s)	28, 415
MboII	GAAGA	2 cut(s)	115, 310
MflI	RGATCY	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	5 cut(s)	65, 279, 285, 338, 369
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	6, 138
MnlI	CCTC	2 cut(s)	82, 422
Mox20I	TGGCCA	1 cut(s)	245
MroXI	GAANNNNTTC	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	2 cut(s)	26, 75
MspR9I	CCNGG	1 cut(s)	26
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	28, 415
NlaIII	CATG	2 cut(s)	65, 164
NlaIV	GGNNCC	3 cut(s)	23, 30, 399
NmuCI	GTSAC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	58, 301
PflFI	GACNNNGTC	1 cut(s)	179
PleI	GAGTC	2 cut(s)	6, 138
PpsI	GAGTC	2 cut(s)	6, 138
PpuMI	RGGWCCY	1 cut(s)	397
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	23, 30, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	3 cut(s)	23, 268, 392
RsaNI	GTAC	3 cut(s)	22, 267, 391
SalI	GTCGAC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	28, 415
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	6, 138
ScrFI	CCNGG	1 cut(s)	26
SetI	ASST	6 cut(s)	23, 74, 253, 261, 268, 392
SfaNI	GCATC	1 cut(s)	142
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	5 cut(s)	65, 279, 285, 338, 369
StyD4I	CCNGG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	226
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	65, 279, 285, 338, 369
TfiI	GAWTC	2 cut(s)	58, 301
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	50, 78, 105
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	2 cut(s)	65, 279
XmiI	GTMKAC	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.