Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000600.1

Orthogroup ID

OG0003789

Physical Location & Seq

Genomic Coordinates Reverse (-)

169840 .. 173847

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000600.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgacctgcgatgagagatggtgcgtcgtcaccggaggccgaggctttgctgctcgccatttggttctcatgctcatccgccagaacgtcttccgtgtccgaattgctgacctcggccccaccatcgatctcgaaccttccgagtccaacggagtcctcgccgatgctttgaacttcggccgtgctgagtacatttccatcgacctccgctgcaaggatcaagttcttcatggtcagaatgctttcctcctcactaaatttagcgcatgtcaaggtgctgaggttgtgttccatatggcggcacctaattcgtcgatcaacaattaccagctccaccattgggtcaatgtggaaggaactaaaaatgtgattgatgcttgtgttaagcagaaagtgaagaggctcatatacactagctctcctagcgttgtgtttgatggggttcatggtattattgatggggatgagttgttgtcatatccacctaagcacaatgatacttattcggccactaaagcgcaaggagaagagttggtaatcaaggcaaacggtgttaaagggcttctaacctgctgcatacgccctagcagcattttcggaccgggtgataggttacttgttccgtctttagttgttgccgccagggcagggaaatccaaggtattttgggttatcctttcttctgctctttcaaatgatcagttcattataggagatggcaataacatttatgatttcacgtatgttgaaaacgtggcccatgcccatatatgtgcagagcgagctctagcatttgaaggcacagttgcagagaaagctgcaggacaggagggtcttaagaggacaattgagtcatacccacacttgagggctgaacatcgacccaaaacagaagggccatctaaagcttctgtatatcttggaagcggaaggggagtttccactgcctttttagcgttctttgtgtatgaaaagcaggaagaaaaaatcgatggcatggttctagaagctttctctcgtggacgcaaattgaagtccaatatacttcgaaaattcagtacatccaaaaggattgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0047012 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

359

Amino Acids

39.49

Weight (kDa)

8.68

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47290 AT1G47290 AT2G26260 AT2G26260
fragaria_vesca	FvH4_2g36970 FvH4_2g36970
malus_domestica	MD08G1046500.v1.1
prunus_persica	Prupe.1G401700_v2.0.a1 Prupe.1G401700_v2.0.a1
pyrus_communis	pycom08g03860 pycom15g04580 pycom15g04640
rosa_chinensis	RchiOBHm_Chr4g0406951 RchiOBHm_Chr6g0304791
rosa_laevigata	RLG00000008747 RLG00000010949
rosa_multiflora	Rmu_sc0000600.1_g000025 Rmu_sc0003120.1_g000003
rosa_roxburghii	Rroxscaffold_7G00163470
rosa_rugosa	Rorug03G0259800 Rorug04G0075400 Rorug06G0334600 Rorug06G0334600 Rorug06G0334700 Rorug06G0334800
rosa_samantha	Rh4AG141600 Rh4BG138400 Rh4DG135500 Rh6AG446500 Rh6BG455100 Rh6CG460000 Rh6DG446800
rosa_wichuraiana	Rw4G011530 Rw6G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	831, 850
Acc36I	ACCTGC	2 cut(s)	14, 578
AccB1I	GGYRCC	1 cut(s)	301
AciI	CCGC	5 cut(s)	79, 208, 299, 639, 927
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	178, 507
AcsI	RAATTY	2 cut(s)	257, 1052
AfaI	GTAC	2 cut(s)	191, 1060
AfiI	CCNNNNNNNGG	4 cut(s)	214, 298, 340, 648
AflII	CTTAAG	1 cut(s)	836
AgsI	TTSAA	5 cut(s)	172, 693, 749, 797, 1033
AjnI	CCWGG	1 cut(s)	641
AluBI	AGCT	6 cut(s)	331, 417, 785, 818, 908, 1010
AluI	AGCT	6 cut(s)	331, 417, 785, 818, 908, 1010
Alw21I	GWGCWC	1 cut(s)	787
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	6 cut(s)	37, 115, 178, 507, 756, 896
ApeKI	GCWGC	5 cut(s)	50, 210, 573, 588, 818
ApoI	RAATTY	2 cut(s)	257, 1052
Asp700I	GAANNNNTTC	2 cut(s)	89, 242
AspLEI	GCGC	2 cut(s)	266, 520
AspS9I	GGNCC	4 cut(s)	116, 599, 757, 896
AsuC2I	CCSGG	1 cut(s)	603
AsuHPI	GGTGA	2 cut(s)	22, 617
AsuII	TTCGAA	1 cut(s)	1048
AvaII	GGWCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	787
BauI	CACGAG	1 cut(s)	1017
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	787
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	37, 197, 560, 600, 805
BccI	CCATC	8 cut(s)	12, 131, 206, 431, 452, 710, 907, 986
BceAI	ACGGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	4 cut(s)	291, 325, 577, 611
BciT130I	CCWGG	1 cut(s)	643
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	603
BfaI	CTAG	5 cut(s)	414, 423, 585, 788, 1004
BfmI	CTRYAG	1 cut(s)	819
BfrI	CTTAAG	1 cut(s)	836
BfuAI	ACCTGC	2 cut(s)	14, 578
BglI	GCCNNNNNGGC	1 cut(s)	644
BisI	GCNGC	7 cut(s)	51, 211, 300, 574, 589, 639, 819
BlsI	GCNGC	7 cut(s)	52, 212, 301, 575, 590, 640, 820
Bme1390I	CCNGG	2 cut(s)	603, 643
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	4 cut(s)	116, 599, 757, 896
BmiI	GGNNCC	2 cut(s)	118, 303
BmrFI	CCNGG	2 cut(s)	603, 643
BmsI	GCATC	2 cut(s)	154, 364
BpiI	GAAGAC	1 cut(s)	82
Bpu10I	CCTNAGC	2 cut(s)	279, 486
Bpu14I	TTCGAA	1 cut(s)	1048
BpuEI	CTTGAG	1 cut(s)	886
BpuMI	CCSGG	1 cut(s)	603
Bsa29I	ATCGAT	2 cut(s)	126, 990
BsaAI	YACGTR	1 cut(s)	741
BsaJI	CCNNGG	4 cut(s)	40, 112, 642, 657
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 298, 340, 648
BseBI	CCWGG	1 cut(s)	643
BseCI	ATCGAT	2 cut(s)	126, 990
BseDI	CCNNGG	4 cut(s)	40, 112, 642, 657
BseGI	GGATG	3 cut(s)	75, 469, 1061
BseLI	CCNNNNNNNGG	4 cut(s)	214, 298, 340, 648
BseMII	CTCAG	2 cut(s)	177, 270
BseRI	GAGGAG	1 cut(s)	239
BseX3I	CGGCCG	1 cut(s)	178
BseXI	GCAGC	5 cut(s)	37, 197, 560, 600, 805
BsgI	GTGCAG	1 cut(s)	795
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	6 cut(s)	39, 117, 180, 509, 758, 898
BshNI	GGYRCC	1 cut(s)	301
BshVI	ATCGAT	2 cut(s)	126, 990
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	33, 602
BslI	CCNNNNNNNGG	4 cut(s)	214, 298, 340, 648
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	6 cut(s)	39, 117, 180, 509, 758, 898
Bsp119I	TTCGAA	1 cut(s)	1048
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	4 cut(s)	127, 217, 315, 697
BspACI	CCGC	5 cut(s)	79, 208, 299, 639, 927
BspANI	GGCC	6 cut(s)	39, 117, 180, 509, 758, 898
BspCNI	CTCAG	2 cut(s)	178, 271
BspDI	ATCGAT	2 cut(s)	126, 990
BspLI	GGNNCC	2 cut(s)	118, 303
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	2 cut(s)	14, 578
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	1048
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	836
BssECI	CCNNGG	4 cut(s)	40, 112, 642, 657
BssMI	GATC	4 cut(s)	127, 217, 315, 697
BssSI	CACGAG	1 cut(s)	1017
BssT1I	CCWWGG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	1017
Bst2UI	CCWGG	1 cut(s)	643
Bst4CI	ACNGT	2 cut(s)	551, 805
Bst6I	CTCTTC	2 cut(s)	392, 522
BstAFI	CTTAAG	1 cut(s)	836
BstBAI	YACGTR	1 cut(s)	741
BstBI	TTCGAA	1 cut(s)	1048
BstC8I	GCNNGC	2 cut(s)	55, 783
BstDEI	CTNAG	3 cut(s)	186, 279, 486
BstF5I	GGATG	3 cut(s)	75, 469, 1061
BstHHI	GCGC	2 cut(s)	266, 520
BstKTI	GATC	4 cut(s)	130, 220, 318, 700
BstMBI	GATC	4 cut(s)	127, 217, 315, 697
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	423, 515, 579, 588, 644, 782, 815, 953
BstNI	CCWGG	1 cut(s)	643
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	601, 641
BstSFI	CTRYAG	1 cut(s)	819
BstV1I	GCAGC	5 cut(s)	37, 197, 560, 600, 805
BstV2I	GAAGAC	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	178
Bsu15I	ATCGAT	2 cut(s)	126, 990
BsuRI	GGCC	6 cut(s)	39, 117, 180, 509, 758, 898
BsuTUI	ATCGAT	2 cut(s)	126, 990
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	75, 469, 1061
BtsI	GCAGTG	1 cut(s)	942
BtsIMutI	CAGTG	1 cut(s)	942
BveI	ACCTGC	2 cut(s)	14, 578
Cac8I	GCNNGC	2 cut(s)	55, 783
CfoI	GCGC	2 cut(s)	266, 520
Cfr13I	GGNCC	4 cut(s)	116, 599, 757, 896
ClaI	ATCGAT	2 cut(s)	126, 990
CpoI	CGGWCCG	1 cut(s)	599
CseI	GACGC	2 cut(s)	13, 1032
Csp6I	GTAC	2 cut(s)	190, 1059
CspI	CGGWCCG	1 cut(s)	599
CviAII	CATG	6 cut(s)	70, 230, 267, 446, 761, 997
CviQI	GTAC	2 cut(s)	190, 1059
DdeI	CTNAG	3 cut(s)	186, 279, 486
DpnI	GATC	4 cut(s)	129, 219, 317, 699
DpnII	GATC	4 cut(s)	127, 217, 315, 697
DrdI	GACNNNNNNGTC	2 cut(s)	831, 850
DseDI	GACNNNNNNGTC	2 cut(s)	831, 850
EaeI	YGGCCR	2 cut(s)	178, 507
EagI	CGGCCG	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	392, 522
EarI	CTCTTC	2 cut(s)	392, 522
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	785
EclXI	CGGCCG	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	599
Eco52I	CGGCCG	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	785
EcoRII	CCWGG	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	657
EcoT38I	GRGCYC	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	6 cut(s)	73, 233, 270, 449, 764, 1000
FatI	CATG	6 cut(s)	69, 229, 266, 445, 760, 996
FauNDI	CATATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	7 cut(s)	51, 211, 300, 574, 589, 639, 819
FokI	GGATG	3 cut(s)	62, 476, 1048
FriOI	GRGCYC	1 cut(s)	787
Fsp4HI	GCNGC	7 cut(s)	51, 211, 300, 574, 589, 639, 819
FspBI	CTAG	5 cut(s)	414, 423, 585, 788, 1004
GlaI	GCGC	2 cut(s)	265, 519
GluI	GCNGC	7 cut(s)	51, 211, 300, 574, 589, 639, 819
HaeIII	GGCC	6 cut(s)	39, 117, 180, 509, 758, 898
HapII	CCGG	2 cut(s)	33, 602
HgaI	GACGC	2 cut(s)	13, 1032
HhaI	GCGC	2 cut(s)	266, 520
Hin1II	CATG	6 cut(s)	73, 233, 270, 449, 764, 1000
Hin6I	GCGC	2 cut(s)	264, 518
HinP1I	GCGC	2 cut(s)	264, 518
HindIII	AAGCTT	2 cut(s)	906, 1008
HinfI	GANTC	3 cut(s)	143, 153, 851
HpaII	CCGG	2 cut(s)	33, 602
HphI	GGTGA	2 cut(s)	22, 617
Hpy166II	GTNNAC	1 cut(s)	1022
Hpy188I	TCNGA	4 cut(s)	101, 142, 237, 599
Hpy188III	TCNNGA	2 cut(s)	131, 1004
Hpy8I	GTNNAC	1 cut(s)	1022
Hpy99I	CGWCG	2 cut(s)	29, 316
HpyAV	CCTTC	5 cut(s)	147, 347, 791, 887, 924
HpyCH4III	ACNGT	2 cut(s)	551, 805
HpyCH4IV	ACGT	3 cut(s)	87, 740, 753
HpyCH4V	TGCA	5 cut(s)	213, 576, 776, 809, 821
HpyF10VI	GCNNNNNNNGC	8 cut(s)	423, 515, 579, 588, 644, 782, 815, 953
HpyF3I	CTNAG	3 cut(s)	186, 279, 486
HpySE526I	ACGT	3 cut(s)	87, 740, 753
Hsp92II	CATG	6 cut(s)	73, 233, 270, 449, 764, 1000
HspAI	GCGC	2 cut(s)	264, 518
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	127, 217, 315, 697
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	5 cut(s)	37, 197, 560, 600, 805
LweI	GCATC	2 cut(s)	154, 364
MaeI	CTAG	5 cut(s)	414, 423, 585, 788, 1004
MaeII	ACGT	3 cut(s)	87, 740, 753
MaeIII	GTNAC	2 cut(s)	28, 612
MalI	GATC	4 cut(s)	129, 219, 317, 699
MboI	GATC	4 cut(s)	127, 217, 315, 697
MboII	GAAGA	6 cut(s)	82, 218, 409, 539, 672, 992
MfeI	CAATTG	1 cut(s)	846
MhlI	GDGCHC	1 cut(s)	787
MluCI	AATT	7 cut(s)	102, 257, 307, 322, 846, 1028, 1052
MlyI	GAGTC	3 cut(s)	152, 162, 860
MmeI	TCCRAC	1 cut(s)	171
MroXI	GAANNNNTTC	2 cut(s)	89, 242
MseI	TTAA	3 cut(s)	384, 555, 837
MslI	CAYNNNNRTG	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	210
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	2 cut(s)	33, 602
MspR9I	CCNGG	2 cut(s)	603, 643
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	643
MwoI	GCNNNNNNNGC	8 cut(s)	423, 515, 579, 588, 644, 782, 815, 953
NciI	CCSGG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	4 cut(s)	127, 217, 315, 697
NlaIII	CATG	6 cut(s)	73, 233, 270, 449, 764, 1000
NlaIV	GGNNCC	2 cut(s)	118, 303
NmeAIII	GCCGAG	2 cut(s)	65, 93
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	1048
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	2 cut(s)	89, 242
PkrI	GCNGC	7 cut(s)	52, 212, 301, 575, 590, 640, 820
PleI	GAGTC	3 cut(s)	151, 161, 859
PpsI	GAGTC	3 cut(s)	151, 161, 859
Ppu21I	YACGTR	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	641
PspGI	CCWGG	1 cut(s)	641
PspN4I	GGNNCC	2 cut(s)	118, 303
PspPI	GGNCC	4 cut(s)	116, 599, 757, 896
PstI	CTGCAG	1 cut(s)	823
RsaI	GTAC	2 cut(s)	191, 1060
RsaNI	GTAC	2 cut(s)	190, 1059
RseI	CAYNNNNRTG	1 cut(s)	771
Rsr2I	CGGWCCG	1 cut(s)	599
RsrII	CGGWCCG	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	787
SaqAI	TTAA	3 cut(s)	384, 555, 837
SatI	GCNGC	7 cut(s)	51, 211, 300, 574, 589, 639, 819
Sau3AI	GATC	4 cut(s)	127, 217, 315, 697
Sau96I	GGNCC	4 cut(s)	116, 599, 757, 896
SchI	GAGTC	3 cut(s)	152, 162, 860
ScrFI	CCNGG	2 cut(s)	603, 643
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	2 cut(s)	154, 364
SfcI	CTRYAG	1 cut(s)	819
SfuI	TTCGAA	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	1 cut(s)	771
SmlI	CTYRAG	2 cut(s)	836, 865
SmoI	CTYRAG	2 cut(s)	836, 865
Sse9I	AATT	7 cut(s)	102, 257, 307, 322, 846, 1028, 1052
SsiI	CCGC	5 cut(s)	79, 208, 299, 639, 927
SspMI	CTAG	5 cut(s)	414, 423, 585, 788, 1004
SstI	GAGCTC	1 cut(s)	787
StyD4I	CCNGG	2 cut(s)	601, 641
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	551, 805
TaiI	ACGT	3 cut(s)	90, 743, 756
TaqI	TCGA	7 cut(s)	126, 132, 201, 314, 880, 990, 1048
TasI	AATT	7 cut(s)	102, 257, 307, 322, 846, 1028, 1052
TatI	WGTACW	2 cut(s)	189, 1058
TauI	GCSGC	2 cut(s)	302, 641
Tru1I	TTAA	3 cut(s)	384, 555, 837
Tru9I	TTAA	3 cut(s)	384, 555, 837
TscAI	CASTG	1 cut(s)	949
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	5 cut(s)	50, 210, 573, 588, 818
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	218, 434, 694, 984
TspGWI	ACGGA	3 cut(s)	83, 165, 612
TspRI	CASTG	1 cut(s)	949
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	2 cut(s)	257, 1052
XbaI	TCTAGA	1 cut(s)	1003
XceI	RCATGY	1 cut(s)	270
XmnI	GAANNNNTTC	2 cut(s)	89, 242
XspI	CTAG	5 cut(s)	414, 423, 585, 788, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.