Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003789

Physical Location & Seq

Genomic Coordinates Forward (+)

27020280 .. 27027856

Gene Structure 7577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG135500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTGGAAGAAAGTGAAGAGGCTCATATACACTAGCTCTCCTAGCGTTGTGTTTGATGGGGTTCATGGTATTATTGATGGGGATGAGTTGTTGTCATATCCACCTAAGCACAATGATACTTATTCGGCCACTAAAGCGCAAGGAGAAGAGTTGGTAATCAAGGCAAACGGTGTTAAAGGGCTTCTAACCTGCTGCATACGCCCTAGCAGCATTTTCGGACCCGGTGATAGGTTACTTGTTCCGTCTTTAGTTGTTGCCGCCAGGGCAGGGAAATCCAAGTTCATTATAGGAGATGGCAATAACATTTATGATTTCACGTATGTTGAAAACGTGGCCCATGCCCATATATGTGCAGAGCGAGCTCTAGCATTTGAAGGCACAGTTGCAGAGAAAGCTGCAGGACAGGCATATTTTATAACCAATATGGAACCTATTAAGTTTTGGGAGTTTATTTCACTTATTCTAGAAGGTCTTGGTTATGAAAGACCAAGGATAAAAATCCCTACAGCTGTTATGATGCCAATTGCACATGTGGTGGAGTGCACATATAAGCTTTTGGGCCCGTATGGGATGAAGGTTCCACAGTTGACGCCTTCAAGAATTAGACTTCTCTCTTGCACCAGATCTTTTAAATCTTCAAAAGCACAGGATCGAATTGGTTACACACCCATTATTTCGCTTCAGGAGGGTCTTAAGAGGACAATTGAGTCATACCCACACTTGAGGGCTGAACATCGACCCAAAAGAGAAGGGCCATCTAAAGCTTCTGTATATCTTGGAAGCGGAAGGGTTGCTGACGCATTACTGTGGAAGGATAAAAAACAGACATTCAAGGCACTATTAGTTTTGATTGCGATCTACTACAACTTCATTGAATCTAAAGCTACGATTATTACTGTCATTTCGAAGAGTCTCATGTTCGCATCAATTTTCATGTTCATCTCTGGCAATTTACCAGAAATGATATTAGGATATAAACTCGAGAAGCTTCAATCATCACATTTTCACTTCTCAGAAGAGATGTCACAACAAATTGCTGCATTTGTGGTCTCATCATGGAATATATCTGTCAAAACTTTAAAATCTCTCGGGAAAGGAAATGACTGCATATTGTTTCTTAAGGCGGCTGTATCTCTACTGGTTCTTAGCTTTGTTGGAGCTATTTCACTTCAGAACTCATTTATTATAGGTTATTCTCTCTCCTTCCTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0047012 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01130 map00100 map01100 map01130

Pfam Domains

Protein Families

3Beta_HSD Reticulon

Protein Analysis

404

Amino Acids

44.8

Weight (kDa)

9.41

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3Beta_HSD	PF01073	4 - 167	3.7e-49	3-beta hydroxysteroid dehydrogenase/isomerase family
Epimerase	PF01370	4 - 120	8.9e-18	NAD dependent epimerase/dehydratase family
Reticulon	PF02453	264 - 403	5.5e-22	Reticulon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47290 AT1G47290 AT2G26260 AT2G26260
fragaria_vesca	FvH4_2g36970 FvH4_2g36970
malus_domestica	MD08G1046500.v1.1
prunus_persica	Prupe.1G401700_v2.0.a1 Prupe.1G401700_v2.0.a1
pyrus_communis	pycom08g03860 pycom15g04580 pycom15g04640
rosa_chinensis	RchiOBHm_Chr4g0406951 RchiOBHm_Chr6g0304791
rosa_laevigata	RLG00000008747 RLG00000010949
rosa_multiflora	Rmu_sc0000600.1_g000025 Rmu_sc0003120.1_g000003
rosa_roxburghii	Rroxscaffold_7G00163470
rosa_rugosa	Rorug03G0259800 Rorug04G0075400 Rorug06G0334600 Rorug06G0334600 Rorug06G0334700 Rorug06G0334800
rosa_samantha	Rh4AG141600 Rh4BG138400 Rh4DG135500 Rh6AG446500 Rh6BG455100 Rh6CG460000 Rh6DG446800
rosa_wichuraiana	Rw4G011530 Rw6G038850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AasI	GACNNNNNNGTC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	3 cut(s)	258, 783, 1124
AclWI	GGATC	1 cut(s)	657
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	2 cut(s)	665, 1154
AcyI	GRCGYC	1 cut(s)	590
AfiI	CCNNNNNNNGG	2 cut(s)	228, 267
AflII	CTTAAG	2 cut(s)	692, 1118
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	7 cut(s)	326, 374, 597, 639, 832, 875, 992
AjnI	CCWGG	1 cut(s)	260
Alw21I	GWGCWC	2 cut(s)	364, 545
Alw26I	GTCTC	2 cut(s)	917, 1054
Alw44I	GTGCAC	1 cut(s)	541
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	2 cut(s)	980, 1088
AoxI	GGCC	4 cut(s)	126, 333, 559, 752
ApaI	GGGCCC	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	541
ApeKI	GCWGC	4 cut(s)	192, 207, 395, 1037
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	5 cut(s)	218, 334, 559, 560, 752
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	905
AvaI	CYCGRG	2 cut(s)	980, 1088
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	2 cut(s)	545, 563
BanII	GRGCYC	2 cut(s)	364, 563
Bbv12I	GWGCWC	2 cut(s)	364, 545
BbvI	GCAGC	4 cut(s)	179, 219, 382, 1024
BccI	CCATC	4 cut(s)	50, 71, 287, 763
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	917, 1054
BfaI	CTAG	5 cut(s)	33, 42, 204, 365, 464
BfmI	CTRYAG	2 cut(s)	396, 504
BfrI	CTTAAG	2 cut(s)	692, 1118
BfuAI	ACCTGC	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	6 cut(s)	193, 208, 258, 396, 1038, 1125
BlsI	GCNGC	6 cut(s)	194, 209, 259, 397, 1039, 1126
Bme1390I	CCNGG	2 cut(s)	222, 262
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	2 cut(s)	980, 1088
BmgT120I	GGNCC	5 cut(s)	218, 334, 559, 560, 752
BmiI	GGNNCC	4 cut(s)	220, 429, 561, 579
BmrFI	CCNGG	2 cut(s)	222, 262
BmsI	GCATC	2 cut(s)	507, 932
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	905
BpuEI	CTTGAG	1 cut(s)	742
BpuMI	CCSGG	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	2 cut(s)	497, 854
BsaHI	GRCGYC	1 cut(s)	590
BsaI	GGTCTC	1 cut(s)	1054
BsaJI	CCNNGG	2 cut(s)	261, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 267
Bse1I	ACTGG	1 cut(s)	1143
Bse8I	GATNNNNATC	2 cut(s)	497, 854
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	261, 488
BseGI	GGATG	2 cut(s)	88, 576
BseJI	GATNNNNATC	2 cut(s)	497, 854
BseLI	CCNNNNNNNGG	2 cut(s)	228, 267
BseMII	CTCAG	1 cut(s)	1026
BseNI	ACTGG	1 cut(s)	1143
BseSI	GKGCMC	2 cut(s)	545, 563
BseXI	GCAGC	4 cut(s)	179, 219, 382, 1024
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	128, 335, 561, 754
BsiHKAI	GWGCWC	2 cut(s)	364, 545
BsiHKCI	CYCGRG	2 cut(s)	980, 1088
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	228, 267
BsmAI	GTCTC	2 cut(s)	917, 1054
BsnI	GGCC	4 cut(s)	128, 335, 561, 754
Bso31I	GGTCTC	1 cut(s)	1054
BsoBI	CYCGRG	2 cut(s)	980, 1088
Bsp119I	TTCGAA	1 cut(s)	905
Bsp120I	GGGCCC	1 cut(s)	559
Bsp1286I	GDGCHC	3 cut(s)	364, 545, 563
Bsp143I	GATC	3 cut(s)	623, 649, 855
BspACI	CCGC	3 cut(s)	258, 783, 1124
BspANI	GGCC	4 cut(s)	128, 335, 561, 754
BspCNI	CTCAG	1 cut(s)	1025
BspLI	GGNNCC	4 cut(s)	220, 429, 561, 579
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	905
BspTI	CTTAAG	2 cut(s)	692, 1118
BspTNI	GGTCTC	1 cut(s)	1054
BsrI	ACTGG	1 cut(s)	1143
BssECI	CCNNGG	2 cut(s)	261, 488
BssMI	GATC	3 cut(s)	623, 649, 855
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	5 cut(s)	170, 382, 585, 807, 898
Bst6I	CTCTTC	4 cut(s)	11, 141, 902, 1011
BstACI	GRCGYC	1 cut(s)	590
BstAFI	CTTAAG	2 cut(s)	692, 1118
BstBAI	YACGTR	1 cut(s)	318
BstBI	TTCGAA	1 cut(s)	905
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	105, 1012, 1145
BstF5I	GGATG	2 cut(s)	88, 576
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	626, 652, 858
BstMAI	GTCTC	2 cut(s)	917, 1054
BstMBI	GATC	3 cut(s)	623, 649, 855
BstMWI	GCNNNNNNNGC	8 cut(s)	42, 134, 198, 207, 263, 359, 392, 404
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	220, 260
BstSFI	CTRYAG	2 cut(s)	396, 504
BstSLI	GKGCMC	2 cut(s)	545, 563
BstV1I	GCAGC	4 cut(s)	179, 219, 382, 1024
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	128, 335, 561, 754
BtsCI	GGATG	2 cut(s)	88, 576
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	5 cut(s)	218, 334, 559, 560, 752
CseI	GACGC	2 cut(s)	598, 806
CviAII	CATG	6 cut(s)	65, 338, 530, 916, 934, 1056
DdeI	CTNAG	3 cut(s)	105, 1012, 1145
DpnI	GATC	3 cut(s)	625, 651, 857
DpnII	GATC	3 cut(s)	623, 649, 855
DraI	TTTAAA	2 cut(s)	631, 1080
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	4 cut(s)	11, 141, 902, 1011
EarI	CTCTTC	4 cut(s)	11, 141, 902, 1011
Ecl136II	GAGCTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	364, 563
Eco31I	GGTCTC	1 cut(s)	1054
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	665, 1154
Eco88I	CYCGRG	2 cut(s)	980, 1088
EcoICRI	GAGCTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	364, 563
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	6 cut(s)	68, 341, 533, 919, 937, 1059
FatI	CATG	6 cut(s)	64, 337, 529, 915, 933, 1055
Fnu4HI	GCNGC	6 cut(s)	193, 208, 258, 396, 1038, 1125
FokI	GGATG	2 cut(s)	95, 583
FriOI	GRGCYC	2 cut(s)	364, 563
Fsp4HI	GCNGC	6 cut(s)	193, 208, 258, 396, 1038, 1125
FspBI	CTAG	5 cut(s)	33, 42, 204, 365, 464
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	6 cut(s)	193, 208, 258, 396, 1038, 1125
HaeIII	GGCC	4 cut(s)	128, 335, 561, 754
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	2 cut(s)	598, 806
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	6 cut(s)	68, 341, 533, 919, 937, 1059
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	3 cut(s)	551, 762, 986
HinfI	GANTC	3 cut(s)	707, 875, 910
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	543, 588
Hpy188I	TCNGA	3 cut(s)	218, 1015, 1173
Hpy188III	TCNNGA	5 cut(s)	464, 597, 683, 982, 1090
Hpy8I	GTNNAC	2 cut(s)	543, 588
HpyAV	CCTTC	8 cut(s)	368, 461, 568, 603, 743, 780, 805, 1213
HpyCH4III	ACNGT	5 cut(s)	170, 382, 585, 807, 898
HpyCH4IV	ACGT	2 cut(s)	317, 330
HpyCH4V	TGCA	9 cut(s)	195, 353, 386, 398, 527, 543, 618, 1040, 1107
HpyF10VI	GCNNNNNNNGC	8 cut(s)	42, 134, 198, 207, 263, 359, 392, 404
HpyF3I	CTNAG	3 cut(s)	105, 1012, 1145
HpySE526I	ACGT	2 cut(s)	317, 330
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	6 cut(s)	68, 341, 533, 919, 937, 1059
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	623, 649, 855
LmnI	GCTCC	1 cut(s)	1157
Lsp1109I	GCAGC	4 cut(s)	179, 219, 382, 1024
LweI	GCATC	2 cut(s)	507, 932
MaeI	CTAG	5 cut(s)	33, 42, 204, 365, 464
MaeII	ACGT	2 cut(s)	317, 330
MaeIII	GTNAC	3 cut(s)	231, 659, 1023
MalI	GATC	3 cut(s)	625, 651, 857
MboI	GATC	3 cut(s)	623, 649, 855
MboII	GAAGA	6 cut(s)	19, 28, 158, 627, 919, 1028
MfeI	CAATTG	2 cut(s)	522, 702
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	3 cut(s)	364, 545, 563
MluCI	AATT	7 cut(s)	522, 600, 654, 702, 927, 949, 1032
MlyI	GAGTC	2 cut(s)	716, 919
MmeI	TCCRAC	1 cut(s)	1135
MnlI	CCTC	4 cut(s)	12, 679, 690, 717
MseI	TTAA	6 cut(s)	174, 435, 630, 693, 1079, 1119
MslI	CAYNNNNRTG	2 cut(s)	348, 805
MspA1I	CMGCKG	1 cut(s)	509
MspCI	CTTAAG	2 cut(s)	692, 1118
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	222, 262
MunI	CAATTG	2 cut(s)	522, 702
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	8 cut(s)	42, 134, 198, 207, 263, 359, 392, 404
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	3 cut(s)	623, 649, 855
NlaIII	CATG	6 cut(s)	68, 341, 533, 919, 937, 1059
NlaIV	GGNNCC	4 cut(s)	220, 429, 561, 579
NmuCI	GTSAC	1 cut(s)	1023
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	1 cut(s)	905
PaeR7I	CTCGAG	1 cut(s)	980
PciI	ACATGT	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	6 cut(s)	194, 209, 259, 397, 1039, 1126
PleI	GAGTC	2 cut(s)	715, 918
PpsI	GAGTC	2 cut(s)	715, 918
Ppu21I	YACGTR	1 cut(s)	318
PscI	ACATGT	1 cut(s)	529
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	220, 429, 561, 579
PspOMI	GGGCCC	1 cut(s)	559
PspPI	GGNCC	5 cut(s)	218, 334, 559, 560, 752
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	348, 805
SacI	GAGCTC	1 cut(s)	364
SaqAI	TTAA	6 cut(s)	174, 435, 630, 693, 1079, 1119
SatI	GCNGC	6 cut(s)	193, 208, 258, 396, 1038, 1125
Sau3AI	GATC	3 cut(s)	623, 649, 855
Sau96I	GGNCC	5 cut(s)	218, 334, 559, 560, 752
SchI	GAGTC	2 cut(s)	716, 919
ScrFI	CCNGG	2 cut(s)	222, 262
SduI	GDGCHC	3 cut(s)	364, 545, 563
SfaNI	GCATC	2 cut(s)	507, 932
SfcI	CTRYAG	2 cut(s)	396, 504
Sfr274I	CTCGAG	1 cut(s)	980
SfuI	TTCGAA	1 cut(s)	905
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	980
SmiMI	CAYNNNNRTG	2 cut(s)	348, 805
SmlI	CTYRAG	4 cut(s)	692, 721, 980, 1118
SmoI	CTYRAG	4 cut(s)	692, 721, 980, 1118
Sse9I	AATT	7 cut(s)	522, 600, 654, 702, 927, 949, 1032
SsiI	CCGC	3 cut(s)	258, 783, 1124
SspMI	CTAG	5 cut(s)	33, 42, 204, 365, 464
SstI	GAGCTC	1 cut(s)	364
StyD4I	CCNGG	2 cut(s)	220, 260
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	5 cut(s)	170, 382, 585, 807, 898
TaiI	ACGT	2 cut(s)	320, 333
TaqI	TCGA	4 cut(s)	652, 736, 905, 981
TasI	AATT	7 cut(s)	522, 600, 654, 702, 927, 949, 1032
TauI	GCSGC	2 cut(s)	260, 1127
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	6 cut(s)	174, 435, 630, 693, 1079, 1119
Tru9I	TTAA	6 cut(s)	174, 435, 630, 693, 1079, 1119
TseFI	GTSAC	1 cut(s)	1023
TseI	GCWGC	4 cut(s)	192, 207, 395, 1037
Tsp45I	GTSAC	1 cut(s)	1023
TspDTI	ATGAA	7 cut(s)	53, 271, 495, 587, 859, 922, 928
TspGWI	ACGGA	1 cut(s)	231
Vha464I	CTTAAG	2 cut(s)	692, 1118
VneI	GTGCAC	1 cut(s)	541
VpaK11BI	GGWCC	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	463
XceI	RCATGY	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	980
XspI	CTAG	5 cut(s)	33, 42, 204, 365, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.