AT1G47570

Zinc finger, C3HC4 type (RING finger)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
17477579 .. 17483502
5924 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47570.2

Sequence Viewer

Length: 1401 bp
ATGACGACGACGGCGGAAACTGGGCAATCCTCTGGTTCGAAACCCTCTGATGATGATGCATGGGCCAAACTGGTTCCTCTGGACACCAGATTCTCTGACATTGAGATTAGGTGCAATGATATGGTAATATGCTCTGAGATTAAACCGTCTTCCCTGGAAAAACATGAATGGTGCAGAATAACTAAGAATTTGGGTCAAAGTTCTGCCACTATACATAATAAGAGTTCGGATGCTATACTTGTTGACAAGGCTGTTGTCCCGAAAGATGGTGCTGTTGATATCATTAGTGGATCTGAAATTGTTCCTGGCCCTGAAGAACAAGGGTACTTGCAGTACAGATTTACAATAATGCCTGCTCCAGAATCCAGAACCCAGCTATTACAGATTTCCATAGATCCTGAACATGCAAAATGCAGTATCTGCTTAAACATATGGCATGATGTTGTCACAGCTGCACCTTGCCTTCATAATTTCTGTAATGGCTGTTTTTCAGAATGGATGCGGAGATCGGAGGAAAAACATAAACATGTGTTATGTCCACAGTGCAGAACAACAGTACAATATGTGGGAAAAAATCATTTTCTGAAGAACATACAAGAGGAAATATTAAAAGTGGATGCTGCACTGAGGCGACCAGCTGAAGATATTGCAGTGTTGGACTCATCTGCATCGATACAATCAAATCTTATCATTGGGAGCAAGAGAAAACGTCGATTGAATATGCCTGCGCCCACACATGAAGAAAGAGATAGCTTGCGTTTGCAATGCCCACAATGTGTTGCTAATATTGGTGGTTATCGGTGTGAACATCATGGTGCACATCTGCAATGCCACCTGTGTCAAGGAATGATGCCCTTTAGAGCCAATCTCCAAGTGCCGTTACACTGCAAGGGATGCGATAGGCCGTTTTGCGGTGCTTACTGGAGTTCCGAGAATGTTACACAAGGTGTATCTGGTCCAGTCTGCGTTCGCGAAACTTTTAGACCTATCTCGGAACGCACAATTACAAGGATTCCATTCATAACCCATGAAATGAATCGCCATGAACAAGATATAACGCAAAGATGCATTGCCCATATGGAGAAAACTGTGCCGGATGTTGTAGCAGAGTGGCTCAGGCTTTTCAACAATAGAGAAATAGACCGCTCGAGAATGCCTCTGAATCATGCTGAGACGATAACTGCATCAACACATGTTTGCAATGATTGTTATGATAAGCTGGTGGGATTCCTTTTATACTGGTTCCGGATAACACTGCCGAGAAATCATTTGCCAGCGGATGTAGCGGCTAGGGAAGATTGTTGGTATGGATACGCATGTAGGACACAACACCACAACGAAGATCATGCTCGTAAACGTAACCATGTATGTCGCCCTACCAGAGGGAACCATCACTTTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

53.1

Weight (kDa)

7.54

Isoelectric Point (pI)

56.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 124 - 170 1.8e-06 Ring finger domain
zf-C3HC4_2 PF13923 124 - 169 3.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 125 - 169 5.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-CRD PF17979 243 - 405 3.1e-47 Cysteine rich domain with multizinc binding regions
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1146
AccII CGCG 1 cut(s) 972
AccIII TCCGGA 1 cut(s) 1245
AciI CCGC 6 cut(s) 14, 502, 912, 1144, 1277, 1286
AclWI GGATC 2 cut(s) 298, 389
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 3 cut(s) 333, 605, 660
AdeI CACNNNGTG 2 cut(s) 776, 947
AfaI GTAC 3 cut(s) 326, 335, 558
AfiI CCNNNNNNNGG 3 cut(s) 266, 911, 1382
AflIII ACRYGT 2 cut(s) 526, 1192
AgsI TTSAA 2 cut(s) 718, 1126
AjnI CCWGG 2 cut(s) 153, 304
AluBI AGCT 5 cut(s) 376, 452, 638, 753, 1219
AluI AGCT 5 cut(s) 376, 452, 638, 753, 1219
Alw21I GWGCWC 1 cut(s) 820
Alw26I GTCTC 1 cut(s) 1166
Alw44I GTGCAC 1 cut(s) 816
AlwI GGATC 2 cut(s) 298, 389
AlwNI CAGNNNCTG 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 1147
Aor13HI TCCGGA 1 cut(s) 1245
AoxI GGCC 3 cut(s) 63, 307, 902
ApaLI GTGCAC 1 cut(s) 816
ApeKI GCWGC 2 cut(s) 452, 620
ApoI RAATTY 1 cut(s) 187
Asp700I GAANNNNTTC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 730
AspS9I GGNCC 3 cut(s) 63, 308, 956
AsuII TTCGAA 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 1147
AvaII GGWCC 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 820
BaeI ACNNNNGTAYC 2 cut(s) 1303, 1336
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 2 cut(s) 439, 607
BccI CCATC 2 cut(s) 260, 1398
BceAI ACGGC 3 cut(s) 27, 862, 889
BcgI CGANNNNNNTGC 2 cut(s) 1328, 1362
BciT130I CCWGG 2 cut(s) 155, 306
BciVI GTATCC 1 cut(s) 1304
BcoDI GTCTC 1 cut(s) 1166
BfaI CTAG 1 cut(s) 1290
BfuI GTATCC 1 cut(s) 1304
BisI GCNGC 3 cut(s) 453, 621, 1287
BlsI GCNGC 3 cut(s) 454, 622, 1288
Bme1390I CCNGG 2 cut(s) 155, 306
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 1 cut(s) 1147
BmgT120I GGNCC 3 cut(s) 63, 308, 956
BmiI GGNNCC 3 cut(s) 75, 1244, 1388
BmrFI CCNGG 2 cut(s) 155, 306
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 9 cut(s) 46, 220, 489, 607, 677, 840, 884, 1055, 1193
BmuI ACTGGG 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 141
BplI GAGNNNNNCTC 4 cut(s) 852, 884, 1141, 1173
BpmI CTGGAG 2 cut(s) 342, 943
Bpu10I CCTNAGC 1 cut(s) 1115
Bpu14I TTCGAA 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 1245
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 911, 1382
Bse1I ACTGG 5 cut(s) 25, 75, 926, 959, 1244
Bse3DI GCAATG 5 cut(s) 121, 770, 833, 1068, 1207
BseAI TCCGGA 1 cut(s) 1245
BseBI CCWGG 2 cut(s) 155, 306
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 6 cut(s) 235, 504, 622, 899, 1102, 1285
BseLI CCNNNNNNNGG 3 cut(s) 266, 911, 1382
BseMI GCAATG 5 cut(s) 121, 770, 833, 1068, 1207
BseMII CTCAG 4 cut(s) 126, 617, 1129, 1161
BseNI ACTGG 5 cut(s) 25, 75, 926, 959, 1244
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 2 cut(s) 439, 607
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 4 cut(s) 193, 438, 565, 606
Bsh1236I CGCG 1 cut(s) 972
BshFI GGCC 3 cut(s) 65, 309, 904
BshVI ATCGAT 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 1147
BsiSI CCGG 2 cut(s) 1094, 1246
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 266, 911, 1382
BsmAI GTCTC 1 cut(s) 1166
BsmBI CGTCTC 1 cut(s) 1166
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 1158
BsnI GGCC 3 cut(s) 65, 309, 904
BsoBI CYCGRG 1 cut(s) 1147
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 820
Bsp13I TCCGGA 1 cut(s) 1245
Bsp143I GATC 4 cut(s) 290, 394, 506, 1342
Bsp68I TCGCGA 1 cut(s) 972
BspACI CCGC 6 cut(s) 14, 502, 912, 1144, 1277, 1286
BspANI GGCC 3 cut(s) 65, 309, 904
BspCNI CTCAG 4 cut(s) 127, 618, 1128, 1162
BspDI ATCGAT 1 cut(s) 671
BspEI TCCGGA 1 cut(s) 1245
BspFNI CGCG 1 cut(s) 972
BspLI GGNNCC 3 cut(s) 75, 1244, 1388
BspPI GGATC 2 cut(s) 298, 389
BspT104I TTCGAA 1 cut(s) 38
BsrBI CCGCTC 1 cut(s) 1146
BsrDI GCAATG 5 cut(s) 121, 770, 833, 1068, 1207
BsrI ACTGG 5 cut(s) 25, 75, 926, 959, 1244
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 4 cut(s) 290, 394, 506, 1342
Bst2UI CCWGG 2 cut(s) 155, 306
Bst4CI ACNGT 4 cut(s) 147, 543, 556, 1090
BstAPI GCANNNNNTGC 2 cut(s) 420, 894
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 4 cut(s) 354, 726, 755, 1275
BstDEI CTNAG 5 cut(s) 135, 183, 626, 1115, 1170
BstENI CCTNNNNNAGG 1 cut(s) 1380
BstF5I GGATG 6 cut(s) 235, 504, 622, 899, 1102, 1285
BstFNI CGCG 1 cut(s) 972
BstHHI GCGC 1 cut(s) 730
BstKTI GATC 4 cut(s) 293, 397, 509, 1345
BstMAI GTCTC 1 cut(s) 1166
BstMBI GATC 4 cut(s) 290, 394, 506, 1342
BstMWI GCNNNNNNNGC 3 cut(s) 420, 894, 1283
BstNI CCWGG 2 cut(s) 155, 306
BstNSI RCATGY 4 cut(s) 407, 530, 1196, 1320
BstSCI CCNGG 2 cut(s) 153, 304
BstSLI GKGCMC 1 cut(s) 820
BstUI CGCG 1 cut(s) 972
BstV1I GCAGC 2 cut(s) 439, 607
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 290, 394
BstYI RGATCY 2 cut(s) 290, 394
Bsu15I ATCGAT 1 cut(s) 671
BsuI GTATCC 1 cut(s) 1304
BsuRI GGCC 3 cut(s) 65, 309, 904
BsuTUI ATCGAT 1 cut(s) 671
BtsCI GGATG 6 cut(s) 235, 504, 622, 899, 1102, 1285
BtsI GCAGTG 3 cut(s) 657, 883, 1253
BtsIMutI CAGTG 5 cut(s) 548, 623, 657, 883, 1253
BtuMI TCGCGA 1 cut(s) 972
Cac8I GCNNGC 4 cut(s) 354, 726, 755, 1275
CaiI CAGNNNCTG 1 cut(s) 420
CfoI GCGC 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 63, 308, 956
ClaI ATCGAT 1 cut(s) 671
Csp6I GTAC 3 cut(s) 325, 334, 557
CviQI GTAC 3 cut(s) 325, 334, 557
DdeI CTNAG 5 cut(s) 135, 183, 626, 1115, 1170
DpnI GATC 4 cut(s) 292, 396, 508, 1344
DpnII GATC 4 cut(s) 290, 394, 506, 1342
DraIII CACNNNGTG 2 cut(s) 776, 947
EciI GGCGGA 1 cut(s) 29
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 956
Eco57I CTGAAG 3 cut(s) 333, 605, 660
Eco88I CYCGRG 1 cut(s) 1147
EcoNI CCTNNNNNAGG 1 cut(s) 1380
EcoRII CCWGG 2 cut(s) 153, 304
EcoRV GATATC 1 cut(s) 280
EcoT22I ATGCAT 2 cut(s) 61, 1070
Esp3I CGTCTC 1 cut(s) 1166
FaqI GGGAC 1 cut(s) 242
FauNDI CATATG 2 cut(s) 431, 1077
Fnu4HI GCNGC 3 cut(s) 453, 621, 1287
FokI GGATG 6 cut(s) 242, 511, 629, 906, 1109, 1292
Fsp4HI GCNGC 3 cut(s) 453, 621, 1287
FspBI CTAG 1 cut(s) 1290
GlaI GCGC 1 cut(s) 729
GluI GCNGC 3 cut(s) 453, 621, 1287
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 2 cut(s) 342, 943
HaeIII GGCC 3 cut(s) 65, 309, 904
HapII CCGG 2 cut(s) 1094, 1246
HhaI GCGC 1 cut(s) 730
Hin6I GCGC 1 cut(s) 728
HinP1I GCGC 1 cut(s) 728
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 7 cut(s) 90, 362, 659, 1012, 1036, 1162, 1227
HpaII CCGG 2 cut(s) 1094, 1246
Hpy166II GTNNAC 5 cut(s) 244, 539, 806, 818, 1355
Hpy188III TCNNGA 8 cut(s) 80, 259, 359, 366, 398, 971, 1149, 1246
Hpy8I GTNNAC 5 cut(s) 244, 539, 806, 818, 1355
Hpy99I CGWCG 3 cut(s) 10, 13, 714
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 4 cut(s) 147, 543, 556, 1090
HpyCH4IV ACGT 2 cut(s) 709, 1357
HpyF10VI GCNNNNNNNGC 3 cut(s) 420, 894, 1283
HpyF3I CTNAG 5 cut(s) 135, 183, 626, 1115, 1170
HpySE526I ACGT 2 cut(s) 709, 1357
HspAI GCGC 1 cut(s) 728
Kpn2I TCCGGA 1 cut(s) 1245
Kzo9I GATC 4 cut(s) 290, 394, 506, 1342
LmnI GCTCC 2 cut(s) 361, 696
Lsp1109I GCAGC 2 cut(s) 439, 607
LweI GCATC 9 cut(s) 46, 220, 489, 607, 677, 840, 884, 1055, 1193
MaeI CTAG 1 cut(s) 1290
MaeII ACGT 2 cut(s) 709, 1357
MaeIII GTNAC 4 cut(s) 445, 879, 937, 1358
MalI GATC 4 cut(s) 292, 396, 508, 1344
MbiI CCGCTC 1 cut(s) 1146
MboI GATC 4 cut(s) 290, 394, 506, 1342
MboII GAAGA 7 cut(s) 141, 326, 598, 653, 752, 1307, 1352
MflI RGATCY 2 cut(s) 290, 394
MhlI GDGCHC 1 cut(s) 820
MluCI AATT 4 cut(s) 187, 297, 469, 1002
MlyI GAGTC 1 cut(s) 653
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 8 cut(s) 40, 55, 87, 505, 592, 621, 1167, 1376
Mph1103I ATGCAT 2 cut(s) 61, 1070
MroI TCCGGA 1 cut(s) 1245
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 3 cut(s) 141, 425, 608
MslI CAYNNNNRTG 2 cut(s) 525, 813
MspA1I CMGCKG 3 cut(s) 452, 638, 1277
MspI CCGG 2 cut(s) 1094, 1246
MspR9I CCNGG 2 cut(s) 155, 306
Mva1269I GAATGC 1 cut(s) 1158
MvaI CCWGG 2 cut(s) 155, 306
MvnI CGCG 1 cut(s) 972
MwoI GCNNNNNNNGC 3 cut(s) 420, 894, 1283
NdeI CATATG 2 cut(s) 431, 1077
NdeII GATC 4 cut(s) 290, 394, 506, 1342
NlaIV GGNNCC 3 cut(s) 75, 1244, 1388
NmeAIII GCCGAG 1 cut(s) 1284
NmuCI GTSAC 1 cut(s) 445
NruI TCGCGA 1 cut(s) 972
NsiI ATGCAT 2 cut(s) 61, 1070
NspI RCATGY 4 cut(s) 407, 530, 1196, 1320
NspV TTCGAA 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 1147
PciI ACATGT 2 cut(s) 526, 1192
PctI GAATGC 1 cut(s) 1158
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 6 cut(s) 90, 362, 1012, 1036, 1162, 1227
PkrI GCNGC 3 cut(s) 454, 622, 1288
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
PscI ACATGT 2 cut(s) 526, 1192
Psp6I CCWGG 2 cut(s) 153, 304
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 2 cut(s) 153, 304
PspN4I GGNNCC 3 cut(s) 75, 1244, 1388
PspPI GGNCC 3 cut(s) 63, 308, 956
PstNI CAGNNNCTG 1 cut(s) 420
PsuI RGATCY 2 cut(s) 290, 394
PvuII CAGCTG 2 cut(s) 452, 638
RruI TCGCGA 1 cut(s) 972
RsaI GTAC 3 cut(s) 326, 335, 558
RsaNI GTAC 3 cut(s) 325, 334, 557
RseI CAYNNNNRTG 2 cut(s) 525, 813
SaqAI TTAA 3 cut(s) 141, 425, 608
SatI GCNGC 3 cut(s) 453, 621, 1287
Sau3AI GATC 4 cut(s) 290, 394, 506, 1342
Sau96I GGNCC 3 cut(s) 63, 308, 956
SchI GAGTC 1 cut(s) 653
ScrFI CCNGG 2 cut(s) 155, 306
SduI GDGCHC 1 cut(s) 820
SfaNI GCATC 9 cut(s) 46, 220, 489, 607, 677, 840, 884, 1055, 1193
Sfr274I CTCGAG 1 cut(s) 1147
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 956
SlaI CTCGAG 1 cut(s) 1147
SmiMI CAYNNNNRTG 2 cut(s) 525, 813
SmlI CTYRAG 1 cut(s) 1147
SmoI CTYRAG 1 cut(s) 1147
Sse9I AATT 4 cut(s) 187, 297, 469, 1002
SsiI CCGC 6 cut(s) 14, 502, 912, 1144, 1277, 1286
SspI AATATT 2 cut(s) 606, 787
SspMI CTAG 1 cut(s) 1290
StyD4I CCNGG 2 cut(s) 153, 304
TaaI ACNGT 4 cut(s) 147, 543, 556, 1090
TaiI ACGT 2 cut(s) 712, 1360
TaqI TCGA 4 cut(s) 38, 671, 712, 1148
TasI AATT 4 cut(s) 187, 297, 469, 1002
TatI WGTACW 2 cut(s) 333, 556
TauI GCSGC 1 cut(s) 1289
TfiI GAWTC 6 cut(s) 90, 362, 1012, 1036, 1162, 1227
Tru1I TTAA 3 cut(s) 141, 425, 608
Tru9I TTAA 3 cut(s) 141, 425, 608
TscAI CASTG 5 cut(s) 548, 630, 657, 890, 1260
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 2 cut(s) 452, 620
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 7 cut(s) 180, 455, 753, 1009, 1044, 1049, 1059
TspRI CASTG 5 cut(s) 548, 630, 657, 890, 1260
VneI GTGCAC 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 956
XagI CCTNNNNNAGG 1 cut(s) 1380
XapI RAATTY 1 cut(s) 187
XceI RCATGY 4 cut(s) 407, 530, 1196, 1320
XhoI CTCGAG 1 cut(s) 1147
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 1290
Zsp2I ATGCAT 2 cut(s) 61, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.