Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0003425

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 983

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 871 bp

gaaacgttcaagtgtactctgtccccaatgtcgagcagttgtgcaatttgttggaagaaaccacttcctgcataacattgctgatgaaatactgaatgcggattcttcactgagacgctccaacgaagacactgcagttttagattcctatgcaacagtacgatcaaatctggtaataaggtcgggaaaagggctgcttgggaaaagggttcgttcagcagtgcaagatgaagctgatagtgtagagcttccctgccctcaatgcagtaatcaatttggtcattttgcggtgcatattggcatgctcaaggtgttgcacgaagtgcttctcaccacatatgcagtcgcgatactttcaaaccaatctcagaacgcaccatctctagaattcctacttcagcatggtgttgcacaaagtgcttctcaccacatatgcagtcgcgatactttcaaaccaatctcagaacgcaccatctctagaattcctacttcagcacatgaaaacaatcgccatgaacaagaaatcactatgaggtgtattgcacaaatgggaagaacattgcaggatgttattgccgaatggatggtaatgttcaataacagaacaattgatcgaactaacaggatgccactgaagcatgccgagctgataacttctgggacatatacatgcagcgattgttatgagaaactgatctcattcctcttgtactggtttcgggtttcagtttctgcatcccatcttcccccagatgcatcaaaaagggaaaattgctggtatggatattcatgtcgaacacagcaccataatgaagaccatgctcgtaaaaggaatcatgtatgccggccgactaggggtgctaatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000166 GO:0000209 GO:0000278 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036094 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045786 GO:0045862 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051726 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903047 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

289

Amino Acids

32.78

Weight (kDa)

8.9

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47570 AT1G47570 AT1G47570
fragaria_vesca	FvH4_3g38370 FvH4_3g38370 FvH4_3g38370
malus_domestica	MD00G1120300.v1.1 MD00G1120800.v1.1 MD03G1072300.v1.1 MD11G1077300.v1.1 MD11G1077500.v1.1 MD11G1077800.v1.1 MD11G1078400.v1.1 MD11G1078600.v1.1
prunus_persica	Prupe.6G059200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157061 RchiOBHm_Chr2g0157071 RchiOBHm_Chr5g0068971
rosa_laevigata	RLG00000036026
rosa_multiflora	Rmu_sc0000853.1_g000001 Rmu_sc0006282.1_g000033
rosa_roxburghii	Rroxscaffold_1G00011750
rosa_rugosa	Rorug05G0395200 Rorug05G0395300.1 Rorug05G0395400 Rorug07G0214500.1 Rorug07G0214600
rosa_samantha	Rh2BG537300 Rh2DG546100 Rh5BG471000 Rh5CG493600 Rh5DG483700 Rh7BG348000
rosa_wichuraiana	Rw0G006150 Rw2G043230 Rw5G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	348, 442
AciI	CCGC	2 cut(s)	99, 288
AclI	AACGTT	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	846
AcsI	RAATTY	2 cut(s)	387, 481
AcuI	CTGAAG	3 cut(s)	381, 475, 654
AdeI	CACNNNGTG	2 cut(s)	323, 417
AfaI	GTAC	3 cut(s)	16, 160, 711
AfiI	CCNNNNNNNGG	1 cut(s)	855
AgsI	TTSAA	4 cut(s)	10, 358, 452, 596
AluBI	AGCT	3 cut(s)	234, 248, 647
AluI	AGCT	3 cut(s)	234, 248, 647
Alw26I	GTCTC	1 cut(s)	107
AlwNI	CAGNNNCTG	1 cut(s)	732
AoxI	GGCC	1 cut(s)	846
ApeKI	GCWGC	2 cut(s)	194, 673
ApoI	RAATTY	2 cut(s)	387, 481
Asp700I	GAANNNNTTC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	323, 417
BbsI	GAAGAC	2 cut(s)	133, 820
BbvI	GCAGC	2 cut(s)	181, 685
BccI	CCATC	4 cut(s)	386, 480, 578, 748
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	384, 478, 853
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	2 cut(s)	195, 674
BlsI	GCNGC	2 cut(s)	196, 675
BmsI	GCATC	4 cut(s)	616, 743, 744, 765
BpiI	GAAGAC	2 cut(s)	133, 820
BpuEI	CTTGAG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse118I	RCCGGY	1 cut(s)	844
Bse1I	ACTGG	1 cut(s)	717
Bse3DI	GCAATG	2 cut(s)	76, 558
BseGI	GGATG	4 cut(s)	572, 589, 631, 735
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMI	GCAATG	2 cut(s)	76, 558
BseMII	CTCAG	3 cut(s)	102, 381, 475
BseNI	ACTGG	1 cut(s)	717
BseX3I	CGGCCG	1 cut(s)	846
BseXI	GCAGC	2 cut(s)	181, 685
Bsh1236I	CGCG	2 cut(s)	348, 442
Bsh1285I	CGRYCG	1 cut(s)	849
BshFI	GGCC	1 cut(s)	848
BsiEI	CGRYCG	1 cut(s)	849
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	2 cut(s)	7, 674
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	7, 674
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	848
Bsp143I	GATC	3 cut(s)	162, 611, 694
Bsp68I	TCGCGA	2 cut(s)	348, 442
BspACI	CCGC	2 cut(s)	99, 288
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	3 cut(s)	103, 380, 474
BspFNI	CGCG	2 cut(s)	348, 442
BspMAI	CTGCAG	1 cut(s)	137
BsrDI	GCAATG	2 cut(s)	76, 558
BsrFI	RCCGGY	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	717
BssAI	RCCGGY	1 cut(s)	844
BssMI	GATC	3 cut(s)	162, 611, 694
Bst4CI	ACNGT	1 cut(s)	158
BstAPI	GCANNNNNTGC	2 cut(s)	323, 417
BstC8I	GCNNGC	3 cut(s)	303, 640, 846
BstDEI	CTNAG	3 cut(s)	111, 367, 461
BstF5I	GGATG	4 cut(s)	572, 589, 631, 735
BstFNI	CGCG	2 cut(s)	348, 442
BstKTI	GATC	3 cut(s)	165, 614, 697
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	162, 611, 694
BstMCI	CGRYCG	1 cut(s)	849
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 323, 417, 635, 644
BstNSI	RCATGY	3 cut(s)	305, 642, 673
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	2 cut(s)	348, 442
BstV1I	GCAGC	2 cut(s)	181, 685
BstV2I	GAAGAC	2 cut(s)	133, 820
BstZI	CGGCCG	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	848
BtsCI	GGATG	4 cut(s)	572, 589, 631, 735
BtsI	GCAGTG	2 cut(s)	130, 226
BtsIMutI	CAGTG	4 cut(s)	108, 130, 226, 630
BtuMI	TCGCGA	2 cut(s)	348, 442
Cac8I	GCNNGC	3 cut(s)	303, 640, 846
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	844
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	3 cut(s)	15, 159, 710
CviAII	CATG	9 cut(s)	302, 402, 498, 513, 639, 670, 790, 819, 837
CviJI	RGCY	5 cut(s)	194, 234, 248, 647, 848
CviKI_1	RGCY	5 cut(s)	194, 234, 248, 647, 848
CviQI	GTAC	3 cut(s)	15, 159, 710
DdeI	CTNAG	3 cut(s)	111, 367, 461
DpnI	GATC	3 cut(s)	164, 613, 696
DpnII	GATC	3 cut(s)	162, 611, 694
DraIII	CACNNNGTG	2 cut(s)	323, 417
EaeI	YGGCCR	1 cut(s)	846
EagI	CGGCCG	1 cut(s)	846
EclXI	CGGCCG	1 cut(s)	846
Eco52I	CGGCCG	1 cut(s)	846
Eco57I	CTGAAG	3 cut(s)	381, 475, 654
EcoRI	GAATTC	2 cut(s)	387, 481
EcoT22I	ATGCAT	1 cut(s)	758
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	9 cut(s)	305, 405, 501, 516, 642, 673, 793, 822, 840
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FaqI	GGGAC	2 cut(s)	7, 674
FatI	CATG	9 cut(s)	301, 401, 497, 512, 638, 669, 789, 818, 836
FauNDI	CATATG	2 cut(s)	338, 432
Fnu4HI	GCNGC	2 cut(s)	195, 674
FokI	GGATG	4 cut(s)	579, 596, 638, 722
Fsp4HI	GCNGC	2 cut(s)	195, 674
FspBI	CTAG	3 cut(s)	384, 478, 853
GluI	GCNGC	2 cut(s)	195, 674
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	9 cut(s)	305, 405, 501, 516, 642, 673, 793, 822, 840
HinfI	GANTC	3 cut(s)	102, 144, 833
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	323, 417
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	370, 464
Hpy188III	TCNNGA	5 cut(s)	184, 347, 384, 441, 478
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 323, 417, 635, 644
HpyF3I	CTNAG	3 cut(s)	111, 367, 461
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	9 cut(s)	305, 405, 501, 516, 642, 673, 793, 822, 840
KroI	GCCGGC	1 cut(s)	844
KroNI	GCCGGC	1 cut(s)	846
Kzo9I	GATC	3 cut(s)	162, 611, 694
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	2 cut(s)	181, 685
LweI	GCATC	4 cut(s)	616, 743, 744, 765
MaeI	CTAG	3 cut(s)	384, 478, 853
MaeII	ACGT	1 cut(s)	5
MalI	GATC	3 cut(s)	164, 613, 696
MboI	GATC	3 cut(s)	162, 611, 694
MboII	GAAGA	6 cut(s)	67, 97, 138, 565, 735, 825
MfeI	CAATTG	1 cut(s)	607
MluCI	AATT	6 cut(s)	45, 273, 387, 481, 607, 770
MmeI	TCCRAC	2 cut(s)	32, 145
MnlI	CCTC	3 cut(s)	268, 526, 714
Mph1103I	ATGCAT	1 cut(s)	758
MroNI	GCCGGC	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	325
MslI	CAYNNNNRTG	2 cut(s)	668, 808
MspI	CCGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	607
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	2 cut(s)	348, 442
MwoI	GCNNNNNNNGC	5 cut(s)	262, 323, 417, 635, 644
NaeI	GCCGGC	1 cut(s)	846
NdeI	CATATG	2 cut(s)	338, 432
NdeII	GATC	3 cut(s)	162, 611, 694
NgoMIV	GCCGGC	1 cut(s)	844
NlaIII	CATG	9 cut(s)	305, 405, 501, 516, 642, 673, 793, 822, 840
NmeAIII	GCCGAG	1 cut(s)	668
NruI	TCGCGA	2 cut(s)	348, 442
NsiI	ATGCAT	1 cut(s)	758
NspI	RCATGY	3 cut(s)	305, 642, 673
PaeI	GCATGC	2 cut(s)	305, 642
PctI	GAATGC	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	846
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	102, 144, 833
PkrI	GCNGC	2 cut(s)	196, 675
Psp1406I	AACGTT	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	732
RruI	TCGCGA	2 cut(s)	348, 442
RsaI	GTAC	3 cut(s)	16, 160, 711
RsaNI	GTAC	3 cut(s)	15, 159, 710
RseI	CAYNNNNRTG	2 cut(s)	668, 808
SatI	GCNGC	2 cut(s)	195, 674
Sau3AI	GATC	3 cut(s)	162, 611, 694
SetI	ASST	7 cut(s)	8, 183, 236, 250, 313, 537, 649
SfaNI	GCATC	4 cut(s)	616, 743, 744, 765
SfcI	CTRYAG	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	668, 808
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SphI	GCATGC	2 cut(s)	305, 642
Sse9I	AATT	6 cut(s)	45, 273, 387, 481, 607, 770
SsiI	CCGC	2 cut(s)	99, 288
SspMI	CTAG	3 cut(s)	384, 478, 853
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	32, 614, 794
TasI	AATT	6 cut(s)	45, 273, 387, 481, 607, 770
TatI	WGTACW	2 cut(s)	14, 709
TfiI	GAWTC	3 cut(s)	102, 144, 833
TscAI	CASTG	4 cut(s)	115, 137, 226, 637
TseI	GCWGC	2 cut(s)	194, 673
TspDTI	ATGAA	6 cut(s)	100, 244, 514, 529, 778, 826
TspRI	CASTG	4 cut(s)	115, 137, 226, 637
XapI	RAATTY	2 cut(s)	387, 481
XbaI	TCTAGA	2 cut(s)	383, 477
XceI	RCATGY	3 cut(s)	305, 642, 673
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	3 cut(s)	384, 478, 853
Zsp2I	ATGCAT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.