Rorug05G0395200

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003425
Physical Location & Seq
Reverse (-)
54217007 .. 54221078
4072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0395200.1

Sequence Viewer

Length: 1899 bp
ATGCCTCCTGCTAGGAAGGTTTCTGAGTTTTTCAGAGAAGGCAATGACTGGTTTTGCAAAGCCGGATTGCCGAGTGATATTACTGTTGTGGTGGACGGTGTAAGCTTCCATCTTCATAAGTTTCCTCTCATATCAAAATGTGGGAAGATAGCACGTTTATATGAAGAGTCCGAAAGGAAACATGAGAAGATTCTCACTACAGTTCTTGAGGAATTCCCTGGTGGCCCTGACATGTTCCTGATCGCAGCTAAATTCTGCTATGGTATGCGGGTGGAATTGACTTCAAGAAACATAGTAATGGTGTACTGTGCAGCGGACTACCTTGAAATGATAGATGAGTTTGGAGAAGAAAACTTAATCTCAAAGTCGGAGAGTTTTTTCTATAAGAATATACTTCACAACTGGAAAGACTGTATCTTGGCTCTTCAAAGTTCTGAGCCTGTTCTCCAAAGGGCAGAAAAACTTCACATAATAAACAAATGTGTAAATGCTTTATCGGTGATGGTTTGTACTGATCCTAGTTTATTTGGGTGGCCCATGATGATGTATGGTAGCTTACAGAGTCCTGGTGGAAGCATCCTATGGAATGGAATTAATACTGGAGCAAGGATTCGAAGCTCCGAGTCTGATTGGTGGTTTGAAGACATCTCATACCTCAGTGTGAGTTTGTTTGAGAGACTCATCAAGGCAATGGAAACGAAGGGTATAAGACCCGAAAACATTCTAGGTGCTGTAATGCACTATACCAGAAAATACCTACCTGGCCTGGGCAGATGGCAGGGTGGACAACAGGGTATACCCAGGACAGTTACAAGTTTTAGTTTTACACCCATTGCCCTAGATCAAAGGGTAGTTTTAGAAAGCATTGAGAAACTTCTTCCCCAAAAGAAAGGTAAATCATTTTGCCGGTTTTTGCTCGGACTTCTTCGTGTTGCATTAATATTGGGAGCCAGTCAAACCTGCAAGGACTCTTTAGAGAAGAGAATAGGCAGGCAACTGGAATTTGCAACTTTAGATGGTCTTCTGATTCCTACATATTCAGATGCTGAGACATTGTATGATATTGACACTGTTCAACGGATAATCCAACATTTCATGTCATCAGAATCGAAGGTTACACCATTTTCTCCAGCATCAGTTGAACTGGAAACATCTCCATCATCGGGACCATTAAGGTTAGTGGCAAAGCTGATAGATAGCTACATTGCGGAGGTTGCTTCAGATGTTGCTCTAAAGCCTGGAAAGATACGCTCTCTTGCAGAGGCTCTTCCAGATTCTTCAAGAACTTTGCATGATGGGCTGTATCGGTCACTTGATATATACTTCAAGGCGCATCCTTGGCTCACAGATAAGGAGAAGGAAGAACTTTGCAACATCATTGACTTCCAGAAACTCTCTATTGATGCATGTGCCCATGCATCCCAAAATGAAAGGTTGCCGCTTAGAGTTGTTCTTCAAGTCCTGTTCTTTGAGCAGATGCATTTGAGAACTGCTCTAGCTGGTCATCTGAATGTCTTGGAAACAGAAAGTGCCCCTACAGGTCCTGTTAATGTCCAAGCTGAGATGGCTGGCCAGATTATACAGAGGGATGGGTGGGTGACTATGGTGCGTGAGAACCGGGTTTTAAAGGTGGATATGGACAAGATGAGATCTAGAGTTGGAGAGCTCGAACAAGAATTTAGTAAAATAAAGCAAGAGATGAAAAAGGTGTCCAAATCACATAGTTCCCTCAGTTCGCCTCGTGTGGTTGCCAGGAGAATTGGGTGCAATCTTCTTTCACGACCTTCAGATGATAAACCAGTGACCATTGGAAGTACCGGGCCCTCCCCAAGAGCATCAGTTGAGCAGGCACGTTTTTCCTGCCATTCTAGACACAAGAAAAGTTTTTCATTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000166 GO:0000209 GO:0000278 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036094 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045786 GO:0045862 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051726 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903047 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4 zf-RING_2

Protein Analysis

632

Amino Acids

71.17

Weight (kDa)

8.42

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 210 - 470 1.1e-88 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccI GTMKAC 1 cut(s) 796
AciI CCGC 4 cut(s) 268, 314, 1208, 1439
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 1 cut(s) 1570
AcsI RAATTY 4 cut(s) 212, 251, 1001, 1676
AcuI CTGAAG 2 cut(s) 1203, 1770
AfaI GTAC 3 cut(s) 305, 511, 1816
AfiI CCNNNNNNNGG 2 cut(s) 767, 1163
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 9 cut(s) 285, 326, 428, 641, 1076, 1142, 1281, 1327, 1457
AjnI CCWGG 7 cut(s) 217, 565, 760, 765, 800, 1237, 1751
AluBI AGCT 9 cut(s) 105, 248, 555, 618, 1189, 1200, 1499, 1559, 1666
AluI AGCT 9 cut(s) 105, 248, 555, 618, 1189, 1200, 1499, 1559, 1666
Alw21I GWGCWC 1 cut(s) 1668
Alw26I GTCTC 2 cut(s) 670, 1043
AlwI GGATC 1 cut(s) 509
AlwNI CAGNNNCTG 2 cut(s) 1046, 1544
AoxI GGCC 5 cut(s) 223, 533, 763, 1570, 1820
ApaI GGGCCC 1 cut(s) 1824
ApeKI GCWGC 2 cut(s) 245, 311
ApoI RAATTY 4 cut(s) 212, 251, 1001, 1676
AseI ATTAAT 2 cut(s) 594, 938
Asp700I GAANNNNTTC 2 cut(s) 462, 720
AspLEI GCGC 1 cut(s) 1333
AspS9I GGNCC 6 cut(s) 224, 534, 1166, 1541, 1820, 1821
AsuC2I CCSGG 2 cut(s) 1619, 1819
AsuHPI GGTGA 2 cut(s) 511, 1609
AsuII TTCGAA 1 cut(s) 613
AvaII GGWCC 2 cut(s) 1166, 1541
BaeGI GKGCMC 3 cut(s) 1414, 1534, 1824
BalI TGGCCA 1 cut(s) 1572
BanII GRGCYC 2 cut(s) 1668, 1824
BauI CACGAG 1 cut(s) 1740
BbsI GAAGAC 2 cut(s) 648, 1013
Bbv12I GWGCWC 1 cut(s) 1668
BbvI GCAGC 2 cut(s) 257, 323
BccI CCATC 8 cut(s) 117, 496, 768, 1010, 1165, 1289, 1558, 1583
BciT130I CCWGG 7 cut(s) 219, 567, 762, 767, 802, 1239, 1753
BcnI CCSGG 2 cut(s) 1619, 1819
BcoDI GTCTC 2 cut(s) 670, 1043
BfaI CTAG 7 cut(s) 12, 519, 725, 839, 1496, 1653, 1869
BfmI CTRYAG 2 cut(s) 198, 1536
BfuAI ACCTGC 1 cut(s) 968
BglII AGATCT 1 cut(s) 1649
BisI GCNGC 3 cut(s) 246, 312, 1439
BlsI GCNGC 3 cut(s) 247, 313, 1440
Bme1390I CCNGG 9 cut(s) 219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
Bme18I GGWCC 2 cut(s) 1166, 1541
BmgT120I GGNCC 6 cut(s) 224, 534, 1166, 1541, 1820, 1821
BmiI GGNNCC 3 cut(s) 949, 1167, 1822
BmrFI CCNGG 9 cut(s) 219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
BmsI GCATC 8 cut(s) 585, 1033, 1142, 1342, 1393, 1427, 1467, 1844
BpiI GAAGAC 2 cut(s) 648, 1013
BplI GAGNNNNNCTC 2 cut(s) 1477, 1509
BpmI CTGGAG 2 cut(s) 621, 1113
Bpu14I TTCGAA 1 cut(s) 613
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 1619, 1819
BsaJI CCNNGG 4 cut(s) 217, 766, 800, 1337
Bsc4I CCNNNNNNNGG 2 cut(s) 767, 1163
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 7 cut(s) 53, 407, 604, 951, 1002, 1149, 1799
Bse3DI GCAATG 4 cut(s) 49, 696, 831, 1203
BseBI CCWGG 7 cut(s) 219, 567, 762, 767, 802, 1239, 1753
BseDI CCNNGG 4 cut(s) 217, 766, 800, 1337
BseGI GGATG 4 cut(s) 576, 1333, 1418, 1594
BseLI CCNNNNNNNGG 2 cut(s) 767, 1163
BseMI GCAATG 4 cut(s) 49, 696, 831, 1203
BseMII CTCAG 6 cut(s) 15, 426, 670, 1038, 1551, 1744
BseNI ACTGG 7 cut(s) 53, 407, 604, 951, 1002, 1149, 1799
BseSI GKGCMC 3 cut(s) 1414, 1534, 1824
BseXI GCAGC 2 cut(s) 257, 323
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 5 cut(s) 225, 535, 765, 1572, 1822
BsiHKAI GWGCWC 1 cut(s) 1668
BsiSI CCGG 4 cut(s) 63, 907, 1618, 1818
BslFI GGGAC 1 cut(s) 1179
BslI CCNNNNNNNGG 2 cut(s) 767, 1163
BsmAI GTCTC 2 cut(s) 670, 1043
BsmFI GGGAC 1 cut(s) 1179
BsnI GGCC 5 cut(s) 225, 535, 765, 1572, 1822
Bsp119I TTCGAA 1 cut(s) 613
Bsp120I GGGCCC 1 cut(s) 1820
Bsp1286I GDGCHC 4 cut(s) 1414, 1534, 1668, 1824
Bsp143I GATC 4 cut(s) 240, 514, 841, 1649
BspACI CCGC 4 cut(s) 268, 314, 1208, 1439
BspANI GGCC 5 cut(s) 225, 535, 765, 1572, 1822
BspCNI CTCAG 6 cut(s) 16, 427, 669, 1039, 1552, 1743
BspLI GGNNCC 3 cut(s) 949, 1167, 1822
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 2 cut(s) 429, 1272
BspT104I TTCGAA 1 cut(s) 613
BsrDI GCAATG 4 cut(s) 49, 696, 831, 1203
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 7 cut(s) 53, 407, 604, 951, 1002, 1149, 1799
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 4 cut(s) 217, 766, 800, 1337
BssMI GATC 4 cut(s) 240, 514, 841, 1649
BssNAI GTATAC 1 cut(s) 797
BssSI CACGAG 1 cut(s) 1740
BssT1I CCWWGG 1 cut(s) 1337
Bst1107I GTATAC 1 cut(s) 797
Bst2BI CACGAG 1 cut(s) 1740
Bst2UI CCWGG 7 cut(s) 219, 567, 762, 767, 802, 1239, 1753
Bst4CI ACNGT 7 cut(s) 85, 98, 202, 308, 413, 808, 1072
Bst6I CTCTTC 4 cut(s) 159, 429, 974, 1272
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 992, 1570, 1848
BstDEI CTNAG 7 cut(s) 24, 435, 656, 1047, 1442, 1560, 1730
BstF5I GGATG 4 cut(s) 576, 1333, 1418, 1594
BstHHI GCGC 1 cut(s) 1333
BstKTI GATC 4 cut(s) 243, 517, 844, 1652
BstMAI GTCTC 2 cut(s) 670, 1043
BstMBI GATC 4 cut(s) 240, 514, 841, 1649
BstMWI GCNNNNNNNGC 4 cut(s) 1214, 1297, 1339, 1565
BstNI CCWGG 7 cut(s) 219, 567, 762, 767, 802, 1239, 1753
BstNSI RCATGY 2 cut(s) 235, 1410
BstSCI CCNGG 9 cut(s) 217, 565, 760, 765, 800, 1237, 1617, 1751, 1817
BstSFI CTRYAG 2 cut(s) 198, 1536
BstSLI GKGCMC 3 cut(s) 1414, 1534, 1824
BstV1I GCAGC 2 cut(s) 257, 323
BstV2I GAAGAC 2 cut(s) 648, 1013
BstX2I RGATCY 1 cut(s) 1649
BstYI RGATCY 1 cut(s) 1649
BstZ17I GTATAC 1 cut(s) 797
BsuRI GGCC 5 cut(s) 225, 535, 765, 1572, 1822
BtsCI GGATG 4 cut(s) 576, 1333, 1418, 1594
BtsIMutI CAGTG 3 cut(s) 664, 1068, 1806
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 3 cut(s) 992, 1570, 1848
CaiI CAGNNNCTG 2 cut(s) 1046, 1544
CfoI GCGC 1 cut(s) 1333
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 6 cut(s) 224, 534, 1166, 1541, 1820, 1821
Csp6I GTAC 3 cut(s) 304, 510, 1815
CviAII CATG 7 cut(s) 182, 232, 538, 1096, 1292, 1407, 1415
CviQI GTAC 3 cut(s) 304, 510, 1815
DdeI CTNAG 7 cut(s) 24, 435, 656, 1047, 1442, 1560, 1730
DpnI GATC 4 cut(s) 242, 516, 843, 1651
DpnII GATC 4 cut(s) 240, 514, 841, 1649
DraI TTTAAA 1 cut(s) 1626
EaeI YGGCCR 1 cut(s) 1570
Eam1104I CTCTTC 4 cut(s) 159, 429, 974, 1272
EarI CTCTTC 4 cut(s) 159, 429, 974, 1272
Ecl136II GAGCTC 1 cut(s) 1666
Eco130I CCWWGG 1 cut(s) 1337
Eco24I GRGCYC 2 cut(s) 1668, 1824
Eco47I GGWCC 2 cut(s) 1166, 1541
Eco53kI GAGCTC 1 cut(s) 1666
Eco57I CTGAAG 2 cut(s) 1203, 1770
EcoICRI GAGCTC 1 cut(s) 1666
EcoO109I RGGNCCY 2 cut(s) 1541, 1821
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 7 cut(s) 217, 565, 760, 765, 800, 1237, 1751
EcoT14I CCWWGG 1 cut(s) 1337
EcoT22I ATGCAT 3 cut(s) 1408, 1420, 1482
EcoT38I GRGCYC 2 cut(s) 1668, 1824
ErhI CCWWGG 1 cut(s) 1337
FaeI CATG 7 cut(s) 185, 235, 541, 1099, 1295, 1410, 1418
FaqI GGGAC 1 cut(s) 1179
FatI CATG 7 cut(s) 181, 231, 537, 1095, 1291, 1406, 1414
FauI CCCGC 1 cut(s) 261
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 3 cut(s) 246, 312, 1439
FokI GGATG 4 cut(s) 563, 1320, 1405, 1601
FriOI GRGCYC 2 cut(s) 1668, 1824
Fsp4HI GCNGC 3 cut(s) 246, 312, 1439
FspBI CTAG 7 cut(s) 12, 519, 725, 839, 1496, 1653, 1869
GlaI GCGC 1 cut(s) 1332
GluI GCNGC 3 cut(s) 246, 312, 1439
GsuI CTGGAG 2 cut(s) 621, 1113
HaeIII GGCC 5 cut(s) 225, 535, 765, 1572, 1822
HapII CCGG 4 cut(s) 63, 907, 1618, 1818
HhaI GCGC 1 cut(s) 1333
Hin1II CATG 7 cut(s) 185, 235, 541, 1099, 1295, 1410, 1418
Hin6I GCGC 1 cut(s) 1331
HinP1I GCGC 1 cut(s) 1331
HindIII AAGCTT 1 cut(s) 103
HpaII CCGG 4 cut(s) 63, 907, 1618, 1818
HphI GGTGA 2 cut(s) 511, 1609
Hpy166II GTNNAC 4 cut(s) 94, 304, 785, 797
Hpy8I GTNNAC 4 cut(s) 94, 304, 785, 797
HpyAV CCTTC 6 cut(s) 10, 32, 694, 1105, 1351, 1794
HpyCH4III ACNGT 7 cut(s) 85, 98, 202, 308, 413, 808, 1072
HpyCH4IV ACGT 2 cut(s) 154, 1852
HpyF10VI GCNNNNNNNGC 4 cut(s) 1214, 1297, 1339, 1565
HpyF3I CTNAG 7 cut(s) 24, 435, 656, 1047, 1442, 1560, 1730
HpySE526I ACGT 2 cut(s) 154, 1852
Hsp92II CATG 7 cut(s) 185, 235, 541, 1099, 1295, 1410, 1418
HspAI GCGC 1 cut(s) 1331
Kzo9I GATC 4 cut(s) 240, 514, 841, 1649
LguI GCTCTTC 2 cut(s) 429, 1272
LmnI GCTCC 3 cut(s) 602, 623, 947
Lsp1109I GCAGC 2 cut(s) 257, 323
LweI GCATC 8 cut(s) 585, 1033, 1142, 1342, 1393, 1427, 1467, 1844
MaeI CTAG 7 cut(s) 12, 519, 725, 839, 1496, 1653, 1869
MaeII ACGT 2 cut(s) 154, 1852
MaeIII GTNAC 5 cut(s) 808, 1114, 1308, 1597, 1801
MalI GATC 4 cut(s) 242, 516, 843, 1651
MboI GATC 4 cut(s) 240, 514, 841, 1649
MflI RGATCY 1 cut(s) 1649
MhlI GDGCHC 4 cut(s) 1414, 1534, 1668, 1824
MlsI TGGCCA 1 cut(s) 1572
MluCI AATT 7 cut(s) 212, 251, 275, 591, 1001, 1676, 1758
MluNI TGGCCA 1 cut(s) 1572
MlyI GAGTC 5 cut(s) 176, 571, 632, 672, 962
MmeI TCCRAC 3 cut(s) 348, 1111, 1639
Mox20I TGGCCA 1 cut(s) 1572
Mph1103I ATGCAT 3 cut(s) 1408, 1420, 1482
MroXI GAANNNNTTC 2 cut(s) 462, 720
MscI TGGCCA 1 cut(s) 1572
MseI TTAA 6 cut(s) 356, 594, 938, 1172, 1548, 1625
MslI CAYNNNNRTG 3 cut(s) 296, 542, 1509
Msp20I TGGCCA 1 cut(s) 1572
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 4 cut(s) 63, 907, 1618, 1818
MspR9I CCNGG 9 cut(s) 219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
MvaI CCWGG 7 cut(s) 219, 567, 762, 767, 802, 1239, 1753
MwoI GCNNNNNNNGC 4 cut(s) 1214, 1297, 1339, 1565
NciI CCSGG 2 cut(s) 1619, 1819
NdeII GATC 4 cut(s) 240, 514, 841, 1649
NlaIII CATG 7 cut(s) 185, 235, 541, 1099, 1295, 1410, 1418
NlaIV GGNNCC 3 cut(s) 949, 1167, 1822
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 3 cut(s) 1308, 1597, 1801
NsiI ATGCAT 3 cut(s) 1408, 1420, 1482
NspI RCATGY 2 cut(s) 235, 1410
NspV TTCGAA 1 cut(s) 613
PciI ACATGT 1 cut(s) 231
PciSI GCTCTTC 2 cut(s) 429, 1272
PdmI GAANNNNTTC 2 cut(s) 462, 720
PfeI GAWTC 5 cut(s) 190, 610, 1027, 1106, 1274
PkrI GCNGC 3 cut(s) 247, 313, 1440
PleI GAGTC 5 cut(s) 175, 570, 631, 672, 962
PpsI GAGTC 5 cut(s) 175, 570, 631, 672, 962
PpuMI RGGWCCY 1 cut(s) 1541
PscI ACATGT 1 cut(s) 231
PshBI ATTAAT 2 cut(s) 594, 938
Psp124BI GAGCTC 1 cut(s) 1668
Psp5II RGGWCCY 1 cut(s) 1541
Psp6I CCWGG 7 cut(s) 217, 565, 760, 765, 800, 1237, 1751
PspGI CCWGG 7 cut(s) 217, 565, 760, 765, 800, 1237, 1751
PspN4I GGNNCC 3 cut(s) 949, 1167, 1822
PspOMI GGGCCC 1 cut(s) 1820
PspPI GGNCC 6 cut(s) 224, 534, 1166, 1541, 1820, 1821
PspPPI RGGWCCY 1 cut(s) 1541
PstNI CAGNNNCTG 2 cut(s) 1046, 1544
PsuI RGATCY 1 cut(s) 1649
RsaI GTAC 3 cut(s) 305, 511, 1816
RsaNI GTAC 3 cut(s) 304, 510, 1815
RseI CAYNNNNRTG 3 cut(s) 296, 542, 1509
SacI GAGCTC 1 cut(s) 1668
SapI GCTCTTC 2 cut(s) 429, 1272
SaqAI TTAA 6 cut(s) 356, 594, 938, 1172, 1548, 1625
SatI GCNGC 3 cut(s) 246, 312, 1439
Sau3AI GATC 4 cut(s) 240, 514, 841, 1649
Sau96I GGNCC 6 cut(s) 224, 534, 1166, 1541, 1820, 1821
SchI GAGTC 5 cut(s) 176, 571, 632, 672, 962
ScrFI CCNGG 9 cut(s) 219, 567, 762, 767, 802, 1239, 1619, 1753, 1819
SduI GDGCHC 4 cut(s) 1414, 1534, 1668, 1824
SfaNI GCATC 8 cut(s) 585, 1033, 1142, 1342, 1393, 1427, 1467, 1844
SfcI CTRYAG 2 cut(s) 198, 1536
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 2 cut(s) 1166, 1541
SmiMI CAYNNNNRTG 3 cut(s) 296, 542, 1509
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 7 cut(s) 212, 251, 275, 591, 1001, 1676, 1758
SsiI CCGC 4 cut(s) 268, 314, 1208, 1439
SspI AATATT 1 cut(s) 942
SspMI CTAG 7 cut(s) 12, 519, 725, 839, 1496, 1653, 1869
SstI GAGCTC 1 cut(s) 1668
StyD4I CCNGG 9 cut(s) 217, 565, 760, 765, 800, 1237, 1617, 1751, 1817
StyI CCWWGG 1 cut(s) 1337
TaaI ACNGT 7 cut(s) 85, 98, 202, 308, 413, 808, 1072
TaiI ACGT 2 cut(s) 157, 1855
TaqI TCGA 3 cut(s) 613, 1109, 1668
TaqII GACCGA 1 cut(s) 1296
TasI AATT 7 cut(s) 212, 251, 275, 591, 1001, 1676, 1758
TatI WGTACW 2 cut(s) 303, 509
TauI GCSGC 1 cut(s) 1441
TfiI GAWTC 5 cut(s) 190, 610, 1027, 1106, 1274
Tru1I TTAA 6 cut(s) 356, 594, 938, 1172, 1548, 1625
Tru9I TTAA 6 cut(s) 356, 594, 938, 1172, 1548, 1625
TscAI CASTG 3 cut(s) 664, 1075, 1806
TseFI GTSAC 3 cut(s) 1308, 1597, 1801
TseI GCWGC 2 cut(s) 245, 311
Tsp45I GTSAC 3 cut(s) 1308, 1597, 1801
TspDTI ATGAA 6 cut(s) 104, 177, 1084, 1443, 1715, 1878
TspGWI ACGGA 1 cut(s) 1093
TspRI CASTG 3 cut(s) 664, 1075, 1806
VpaK11BI GGWCC 2 cut(s) 1166, 1541
VspI ATTAAT 2 cut(s) 594, 938
XapI RAATTY 4 cut(s) 212, 251, 1001, 1676
XbaI TCTAGA 2 cut(s) 1652, 1868
XceI RCATGY 2 cut(s) 235, 1410
XmiI GTMKAC 1 cut(s) 796
XmnI GAANNNNTTC 2 cut(s) 462, 720
XspI CTAG 7 cut(s) 12, 519, 725, 839, 1496, 1653, 1869
Zsp2I ATGCAT 3 cut(s) 1408, 1420, 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.