Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003425

Physical Location & Seq

Genomic Coordinates Reverse (-)

19013899 .. 19016081

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0214600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTGGTTTTCATTTTTTTCTTGCTATCCTAGGCCTAGTGCTCTTGCCAACACTATGCACCTCTCAAGATACATTTACACGCTCCAGAGCAACCTATTATGGTAGCCCTGATTGCTATGGAACCCCAACTGGAGCTTGTGGCTATGGAGAATATGGAAGGACCGTAAATGATGGTCAAGTATCTGCAGTTGCTAGGCTCTACAGAAATGGCACTGGCTGTGGTGGATGTTACCAGGTTAGATGCACATACCCTTCACATTGCAGTAATGATGGGGTGAATGCGGTGGTGACTGACTACGGCGAAGGAGACAGAACTGACTTCATCTTCAGCCCTAGAGCCTATGCAAAGTTGGCAAACAACCCAGCTTCAACGGAGGTTTTATTTGATTATGGTGTGGTTGATATAGAATTCAGAAGAATCCCTTGCCGGTATTCTACACCCAACCTGGTTTTCAAGGTCCATGAACATAGCAAATTTCCTGAATACTTGGCTATAGTCGTTCAATATGTAGCTGGCCGGAATGATATCACAGCTGTTGAGTTCTGGCAGGAGGATTGCAAACAATGGATCAGCATGCGTAGAGCATATGGAGCAGTATGGGACACTCCAACCCCACCTAGGCGTTCCATTGACATGAGGTTCCAAGTGAGTGGCAGCTCAGGGATCAAATGGGTGCAGGCATCCAACGCCATCCCTGCTGATTGGAAGGCCGGGGCTGCCTATACATCAGCCATTCAGCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000166 GO:0000209 GO:0000278 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036094 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045786 GO:0045862 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051726 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903047 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

249

Amino Acids

27.58

Weight (kDa)

7.52

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	63 - 136	4.7e-09	Lytic transglycolase
Expansin_C	PF01357	152 - 233	3.7e-21	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47570 AT1G47570 AT1G47570
fragaria_vesca	FvH4_3g38370 FvH4_3g38370 FvH4_3g38370
malus_domestica	MD00G1120300.v1.1 MD00G1120800.v1.1 MD03G1072300.v1.1 MD11G1077300.v1.1 MD11G1077500.v1.1 MD11G1077800.v1.1 MD11G1078400.v1.1 MD11G1078600.v1.1
prunus_persica	Prupe.6G059200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157061 RchiOBHm_Chr2g0157071 RchiOBHm_Chr5g0068971
rosa_laevigata	RLG00000036026
rosa_multiflora	Rmu_sc0000853.1_g000001 Rmu_sc0006282.1_g000033
rosa_roxburghii	Rroxscaffold_1G00011750
rosa_rugosa	Rorug05G0395200 Rorug05G0395300.1 Rorug05G0395400 Rorug07G0214500.1 Rorug07G0214600
rosa_samantha	Rh2BG537300 Rh2DG546100 Rh5BG471000 Rh5CG493600 Rh5DG483700 Rh7BG348000
rosa_wichuraiana	Rw0G006150 Rw2G043230 Rw5G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	578, 674
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	2 cut(s)	410, 476
AcuI	CTGAAG	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	3 cut(s)	372, 457, 506
AjnI	CCWGG	2 cut(s)	234, 447
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	6 cut(s)	137, 368, 515, 536, 660, 742
AluI	AGCT	6 cut(s)	137, 368, 515, 536, 660, 742
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	578, 674
AoxI	GGCC	3 cut(s)	34, 517, 711
ApeKI	GCWGC	2 cut(s)	657, 719
ApoI	RAATTY	2 cut(s)	410, 476
AspA2I	CCTAGG	2 cut(s)	31, 620
AspS9I	GGNCC	2 cut(s)	162, 460
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	2 cut(s)	289, 301
AvaII	GGWCC	2 cut(s)	162, 460
AvrII	CCTAGG	2 cut(s)	31, 620
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	669, 706
BccI	CCATC	3 cut(s)	167, 266, 701
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	236, 449
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	5 cut(s)	32, 38, 195, 336, 621
BfmI	CTRYAG	3 cut(s)	186, 202, 495
BisI	GCNGC	2 cut(s)	658, 720
BlnI	CCTAGG	2 cut(s)	31, 620
BlsI	GCNGC	2 cut(s)	659, 721
Bme1390I	CCNGG	3 cut(s)	236, 449, 715
Bme18I	GGWCC	2 cut(s)	162, 460
BmgT120I	GGNCC	2 cut(s)	162, 460
BmiI	GGNNCC	2 cut(s)	124, 644
BmrFI	CCNGG	3 cut(s)	236, 449, 715
BmsI	GCATC	2 cut(s)	233, 692
BpmI	CTGGAG	2 cut(s)	70, 153
Bpu10I	CCTNAGC	1 cut(s)	661
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	31, 620, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	2 cut(s)	136, 220
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	236, 449
BseDI	CCNNGG	3 cut(s)	31, 620, 714
BseGI	GGATG	3 cut(s)	233, 683, 693
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	675
BseNI	ACTGG	2 cut(s)	136, 220
BseXI	GCAGC	2 cut(s)	669, 706
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	3 cut(s)	36, 519, 713
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	430, 520, 714
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	617
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	3 cut(s)	36, 519, 713
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	570, 666
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	3 cut(s)	36, 519, 713
BspCNI	CTCAG	1 cut(s)	674
BspLI	GGNNCC	2 cut(s)	124, 644
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	578, 674
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	136, 220
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	3 cut(s)	31, 620, 714
BssMI	GATC	2 cut(s)	570, 666
BssT1I	CCWWGG	2 cut(s)	31, 620
Bst2UI	CCWGG	2 cut(s)	236, 449
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	517, 578, 681
BstDEI	CTNAG	1 cut(s)	661
BstF5I	GGATG	3 cut(s)	233, 683, 693
BstKTI	GATC	2 cut(s)	573, 669
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	570, 666
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 353, 593, 689, 698, 719
BstNI	CCWGG	2 cut(s)	236, 449
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	3 cut(s)	234, 447, 713
BstSFI	CTRYAG	3 cut(s)	186, 202, 495
BstV1I	GCAGC	2 cut(s)	669, 706
BstXI	CCANNNNNNTGG	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	36, 519, 713
BtsCI	GGATG	3 cut(s)	233, 683, 693
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	517, 578, 681
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	162, 460
CsiI	ACCWGGT	2 cut(s)	234, 447
CviAII	CATG	3 cut(s)	464, 577, 637
DdeI	CTNAG	1 cut(s)	661
DpnI	GATC	2 cut(s)	572, 668
DpnII	GATC	2 cut(s)	570, 666
EaeI	YGGCCR	1 cut(s)	517
Eco130I	CCWWGG	2 cut(s)	31, 620
Eco147I	AGGCCT	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	162, 460
Eco57I	CTGAAG	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	410
EcoRII	CCWGG	2 cut(s)	234, 447
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	31, 620
ErhI	CCWWGG	2 cut(s)	31, 620
FaeI	CATG	3 cut(s)	467, 580, 640
FalI	AAGNNNNNCTT	2 cut(s)	409, 441
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	3 cut(s)	463, 576, 636
FauNDI	CATATG	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	658, 720
FokI	GGATG	3 cut(s)	240, 670, 680
Fsp4HI	GCNGC	2 cut(s)	658, 720
FspBI	CTAG	5 cut(s)	32, 38, 195, 336, 621
GluI	GCNGC	2 cut(s)	658, 720
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	2 cut(s)	70, 153
HaeIII	GGCC	3 cut(s)	36, 519, 713
HapII	CCGG	3 cut(s)	430, 520, 714
Hin1II	CATG	3 cut(s)	467, 580, 640
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	3 cut(s)	430, 520, 714
HphI	GGTGA	2 cut(s)	289, 301
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	3 cut(s)	68, 87, 482
HpyAV	CCTTC	4 cut(s)	153, 264, 299, 703
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	7 cut(s)	60, 188, 246, 264, 347, 561, 679
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 353, 593, 689, 698, 719
HpyF3I	CTNAG	1 cut(s)	661
Hsp92II	CATG	3 cut(s)	467, 580, 640
Kzo9I	GATC	2 cut(s)	570, 666
LmnI	GCTCC	3 cut(s)	89, 134, 593
Lsp1109I	GCAGC	2 cut(s)	669, 706
LweI	GCATC	2 cut(s)	233, 692
MabI	ACCWGGT	2 cut(s)	234, 447
MaeI	CTAG	5 cut(s)	32, 38, 195, 336, 621
MaeIII	GTNAC	2 cut(s)	230, 289
MalI	GATC	2 cut(s)	572, 668
MboI	GATC	2 cut(s)	570, 666
MboII	GAAGA	2 cut(s)	319, 429
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	3 cut(s)	410, 476, 745
MmeI	TCCRAC	2 cut(s)	635, 711
MnlI	CCTC	4 cut(s)	73, 370, 547, 633
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	3 cut(s)	430, 520, 714
MspR9I	CCNGG	3 cut(s)	236, 449, 715
Mva1269I	GAATGC	1 cut(s)	286
MvaI	CCWGG	2 cut(s)	236, 449
MwoI	GCNNNNNNNGC	6 cut(s)	114, 353, 593, 689, 698, 719
NciI	CCSGG	1 cut(s)	715
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	2 cut(s)	570, 666
NlaIII	CATG	3 cut(s)	467, 580, 640
NlaIV	GGNNCC	2 cut(s)	124, 644
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	36
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	2 cut(s)	659, 721
Psp6I	CCWGG	2 cut(s)	234, 447
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	2 cut(s)	234, 447
PspN4I	GGNNCC	2 cut(s)	124, 644
PspPI	GGNCC	2 cut(s)	162, 460
PstI	CTGCAG	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	635
SatI	GCNGC	2 cut(s)	658, 720
Sau3AI	GATC	2 cut(s)	570, 666
Sau96I	GGNCC	2 cut(s)	162, 460
ScrFI	CCNGG	3 cut(s)	236, 449, 715
SduI	GDGCHC	1 cut(s)	45
SexAI	ACCWGGT	2 cut(s)	234, 447
SfaNI	GCATC	2 cut(s)	233, 692
SfcI	CTRYAG	3 cut(s)	186, 202, 495
SinI	GGWCC	2 cut(s)	162, 460
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	3 cut(s)	410, 476, 745
SseBI	AGGCCT	1 cut(s)	36
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	5 cut(s)	32, 38, 195, 336, 621
StuI	AGGCCT	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	234, 447, 713
StyI	CCWWGG	2 cut(s)	31, 620
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	3 cut(s)	410, 476, 745
TfiI	GAWTC	1 cut(s)	420
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	657, 719
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	313, 480
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	162, 460
XapI	RAATTY	2 cut(s)	410, 476
XceI	RCATGY	1 cut(s)	580
XmaJI	CCTAGG	2 cut(s)	31, 620
XspI	CTAG	5 cut(s)	32, 38, 195, 336, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.