Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006282.1

Orthogroup ID

OG0003425

Physical Location & Seq

Genomic Coordinates Forward (+)

134056 .. 135478

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006282.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atggcagaaattggagaaagctctggtgcaaagccctctggtgaaatctgggccaagcttgttccttccgactcgagatttccggatgttgagatcagagatcttgttctgactcaagatacccctcagagtcaagatattgaattacgaggaacccccgatcagtcttctgccactatacaaaataagagttcaaatgcaatacttgttgatggagctgtgatccaatccgaagagagtactgttatcagatctggaagtgaaattattacaggtcttgagagagaagggtgtttaagctacagattcaatgtgttgcttggtcctgaaacttgtcagaagatgctgaagattagtgtggatgctgagcatgcaaatgtactctgtccccaatgtcgagcagttgtgcaatttgttggaagaaaccacttcctgcataacattgccgatgaaatactgaatgtggattcttcactgagacgctccaacgaagacactgcagttttagattcctatgcaacagtacgatcaaatctggtaataaagtcgggaaaggggctgcttgggaaaagggttcgttcagcagtgcaagatgaagctgatagtgtagagcttccctgccctcaatgcagtaatcaatttggtgggtttctctgcaaccgaagcactacccatctgcaatgtcaagcatgtggaggaatgatgccttcacgaaccaatacaagtgtacctcaacactgtatagggtgtgataggtcattttgcggtgcatattggcatgctcaaggcattgcacaaagtgcttctcaccacatatgcagtcgcgatactttcaaaccaatcacagaacgcaccatctctagaattcctacttcagcacatgaaaacaatcgccatgaacaagaaatcactatgaggtgtattgcacaaatgggaagaacattgcaggatgttattgccgaatggatggtaatgttcaataacagaacaattgatcgaactaacaggatgccactgaagcatgccgagctgataacttctgggacatatacatgcagtgattgttatgagaaactgatcgcattcctcttgtactggtttcgggtttcagtttctgcatctcatcttcccccagatgcatcaaaaagggaaaattgctggtatggatatgcatgtcgaacacagcaccataatgaagaccatgctcgtaaaaggaatcatgtatgccggccgactaggggagctaatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000166 GO:0000209 GO:0000278 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007049 GO:0007093 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016605 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022402 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036094 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045786 GO:0045862 GO:0045930 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051726 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903047 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4 zf-RING_2

Protein Analysis

417

Amino Acids

46.48

Weight (kDa)

6.95

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47570 AT1G47570 AT1G47570
fragaria_vesca	FvH4_3g38370 FvH4_3g38370 FvH4_3g38370
malus_domestica	MD00G1120300.v1.1 MD00G1120800.v1.1 MD03G1072300.v1.1 MD11G1077300.v1.1 MD11G1077500.v1.1 MD11G1077800.v1.1 MD11G1078400.v1.1 MD11G1078600.v1.1
prunus_persica	Prupe.6G059200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0157061 RchiOBHm_Chr2g0157071 RchiOBHm_Chr5g0068971
rosa_laevigata	RLG00000036026
rosa_multiflora	Rmu_sc0000853.1_g000001 Rmu_sc0006282.1_g000033
rosa_roxburghii	Rroxscaffold_1G00011750
rosa_rugosa	Rorug05G0395200 Rorug05G0395300.1 Rorug05G0395400 Rorug07G0214500.1 Rorug07G0214600
rosa_samantha	Rh2BG537300 Rh2DG546100 Rh5BG471000 Rh5CG493600 Rh5DG483700 Rh7BG348000
rosa_wichuraiana	Rw0G006150 Rw2G043230 Rw5G042220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	825
AccIII	TCCGGA	1 cut(s)	82
AciI	CCGC	1 cut(s)	765
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	1229
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	3 cut(s)	368, 858, 1037
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	5 cut(s)	241, 381, 525, 729, 1094
AfiI	CCNNNNNNNGG	1 cut(s)	1238
AgsI	TTSAA	5 cut(s)	143, 195, 310, 835, 979
AluBI	AGCT	8 cut(s)	21, 58, 218, 300, 599, 613, 1030, 1244
AluI	AGCT	8 cut(s)	21, 58, 218, 300, 599, 613, 1030, 1244
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	73
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	2 cut(s)	51, 1229
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	1 cut(s)	864
AspS9I	GGNCC	2 cut(s)	51, 323
AsuHPI	GGTGA	2 cut(s)	53, 800
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	323
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BbsI	GAAGAC	3 cut(s)	159, 498, 1203
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	4 cut(s)	206, 681, 863, 961
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	1 cut(s)	472
BfaI	CTAG	2 cut(s)	861, 1236
BfmI	CTRYAG	2 cut(s)	301, 498
BglII	AGATCT	2 cut(s)	100, 251
BisI	GCNGC	1 cut(s)	560
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	561
BmcAI	AGTACT	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	51, 323
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	7 cut(s)	333, 352, 693, 999, 1126, 1127, 1148
BpiI	GAAGAC	3 cut(s)	159, 498, 1203
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	3 cut(s)	99, 299, 768
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	1 cut(s)	1233
Bsc4I	CCNNNNNNNGG	1 cut(s)	1238
Bse118I	RCCGGY	1 cut(s)	1227
Bse1I	ACTGG	1 cut(s)	1100
Bse3DI	GCAATG	4 cut(s)	441, 686, 789, 941
BseAI	TCCGGA	1 cut(s)	82
BseGI	GGATG	5 cut(s)	91, 367, 955, 972, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	1238
BseMI	GCAATG	4 cut(s)	441, 686, 789, 941
BseMII	CTCAG	3 cut(s)	140, 357, 467
BseNI	ACTGG	1 cut(s)	1100
BseX3I	CGGCCG	1 cut(s)	1229
BseXI	GCAGC	1 cut(s)	546
Bsh1236I	CGCG	1 cut(s)	825
Bsh1285I	CGRYCG	1 cut(s)	1232
BshFI	GGCC	2 cut(s)	53, 1231
BsiEI	CGRYCG	1 cut(s)	1232
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	83, 1228
BslFI	GGGAC	2 cut(s)	372, 1057
BslI	CCNNNNNNNGG	1 cut(s)	1238
BsmAI	GTCTC	1 cut(s)	472
BsmBI	CGTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	372, 1057
BsmI	GAATGC	1 cut(s)	1082
BsnI	GGCC	2 cut(s)	53, 1231
BsoBI	CYCGRG	1 cut(s)	73
Bsp13I	TCCGGA	1 cut(s)	82
Bsp143I	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
Bsp1720I	GCTNAGC	1 cut(s)	366
Bsp68I	TCGCGA	1 cut(s)	825
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	2 cut(s)	53, 1231
BspCNI	CTCAG	3 cut(s)	139, 358, 468
BspEI	TCCGGA	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	825
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	1 cut(s)	217
BsrDI	GCAATG	4 cut(s)	441, 686, 789, 941
BsrFI	RCCGGY	1 cut(s)	1227
BsrI	ACTGG	1 cut(s)	1100
BssAI	RCCGGY	1 cut(s)	1227
BssMI	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
Bst4CI	ACNGT	3 cut(s)	244, 523, 740
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	372, 780, 1023, 1229
BstDEI	CTNAG	3 cut(s)	126, 366, 476
BstF5I	GGATG	5 cut(s)	91, 367, 955, 972, 1014
BstFNI	CGCG	1 cut(s)	825
BstKTI	GATC	8 cut(s)	96, 103, 163, 225, 254, 530, 997, 1080
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
BstMCI	CGRYCG	1 cut(s)	1232
BstMWI	GCNNNNNNNGC	6 cut(s)	371, 627, 663, 800, 1018, 1027
BstNSI	RCATGY	6 cut(s)	374, 693, 782, 1025, 1056, 1176
BstSFI	CTRYAG	2 cut(s)	301, 498
BstUI	CGCG	1 cut(s)	825
BstV1I	GCAGC	1 cut(s)	546
BstV2I	GAAGAC	3 cut(s)	159, 498, 1203
BstX2I	RGATCY	2 cut(s)	100, 251
BstYI	RGATCY	2 cut(s)	100, 251
BstZI	CGGCCG	1 cut(s)	1229
BsuRI	GGCC	2 cut(s)	53, 1231
BtsCI	GGATG	5 cut(s)	91, 367, 955, 972, 1014
BtsI	GCAGTG	3 cut(s)	495, 591, 1063
BtsIMutI	CAGTG	6 cut(s)	473, 495, 591, 736, 1013, 1063
BtuMI	TCGCGA	1 cut(s)	825
Cac8I	GCNNGC	4 cut(s)	372, 780, 1023, 1229
CaiI	CAGNNNCTG	1 cut(s)	1115
Cfr10I	RCCGGY	1 cut(s)	1227
Cfr13I	GGNCC	2 cut(s)	51, 323
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	5 cut(s)	240, 380, 524, 728, 1093
CviQI	GTAC	5 cut(s)	240, 380, 524, 728, 1093
DdeI	CTNAG	3 cut(s)	126, 366, 476
DpnI	GATC	8 cut(s)	95, 102, 162, 224, 253, 529, 996, 1079
DpnII	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	1229
EagI	CGGCCG	1 cut(s)	1229
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EclXI	CGGCCG	1 cut(s)	1229
Eco47I	GGWCC	1 cut(s)	323
Eco52I	CGGCCG	1 cut(s)	1229
Eco57I	CTGAAG	3 cut(s)	368, 858, 1037
Eco88I	CYCGRG	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	864
EcoT22I	ATGCAT	2 cut(s)	1141, 1174
Esp3I	CGTCTC	1 cut(s)	472
FaqI	GGGAC	2 cut(s)	372, 1057
FauNDI	CATATG	1 cut(s)	815
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	5 cut(s)	98, 374, 962, 979, 1021
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	861, 1236
GluI	GCNGC	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	53, 1231
HapII	CCGG	2 cut(s)	83, 1228
HgaI	GACGC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	7 cut(s)	71, 112, 130, 306, 467, 509, 1216
HpaII	CCGG	2 cut(s)	83, 1228
HphI	GGTGA	2 cut(s)	53, 800
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	7 cut(s)	70, 98, 111, 129, 232, 251, 339
Hpy8I	GTNNAC	1 cut(s)	728
HpyAV	CCTTC	3 cut(s)	75, 281, 717
HpyCH4III	ACNGT	3 cut(s)	244, 523, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	371, 627, 663, 800, 1018, 1027
HpyF3I	CTNAG	3 cut(s)	126, 366, 476
Kpn2I	TCCGGA	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	1227
KroNI	GCCGGC	1 cut(s)	1229
Kzo9I	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
LmnI	GCTCC	3 cut(s)	215, 488, 1241
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	7 cut(s)	333, 352, 693, 999, 1126, 1127, 1148
MaeI	CTAG	2 cut(s)	861, 1236
MalI	GATC	8 cut(s)	95, 102, 162, 224, 253, 529, 996, 1079
MboI	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	2 cut(s)	100, 251
MluCI	AATT	8 cut(s)	9, 143, 264, 410, 638, 864, 990, 1153
MlyI	GAGTC	3 cut(s)	65, 106, 139
MmeI	TCCRAC	3 cut(s)	93, 397, 510
MnlI	CCTC	8 cut(s)	46, 135, 143, 633, 689, 741, 909, 1097
Mph1103I	ATGCAT	2 cut(s)	1141, 1174
MroI	TCCGGA	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	1227
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	3 cut(s)	375, 1051, 1191
MspI	CCGG	2 cut(s)	83, 1228
MunI	CAATTG	1 cut(s)	990
Mva1269I	GAATGC	1 cut(s)	1082
MvnI	CGCG	1 cut(s)	825
MwoI	GCNNNNNNNGC	6 cut(s)	371, 627, 663, 800, 1018, 1027
NaeI	GCCGGC	1 cut(s)	1229
NdeI	CATATG	1 cut(s)	815
NdeII	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
NgoMIV	GCCGGC	1 cut(s)	1227
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	1051
NruI	TCGCGA	1 cut(s)	825
NsiI	ATGCAT	2 cut(s)	1141, 1174
NspI	RCATGY	6 cut(s)	374, 693, 782, 1025, 1056, 1176
PaeI	GCATGC	3 cut(s)	374, 782, 1025
PaeR7I	CTCGAG	1 cut(s)	73
PctI	GAATGC	1 cut(s)	1082
PdiI	GCCGGC	1 cut(s)	1229
PfeI	GAWTC	4 cut(s)	306, 467, 509, 1216
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	3 cut(s)	65, 106, 138
PpsI	GAGTC	3 cut(s)	65, 106, 138
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	51, 323
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	2 cut(s)	100, 251
RruI	TCGCGA	1 cut(s)	825
RsaI	GTAC	5 cut(s)	241, 381, 525, 729, 1094
RsaNI	GTAC	5 cut(s)	240, 380, 524, 728, 1093
RseI	CAYNNNNRTG	3 cut(s)	375, 1051, 1191
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	8 cut(s)	93, 100, 160, 222, 251, 527, 994, 1077
Sau96I	GGNCC	2 cut(s)	51, 323
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	3 cut(s)	65, 106, 139
SfaNI	GCATC	7 cut(s)	333, 352, 693, 999, 1126, 1127, 1148
SfcI	CTRYAG	2 cut(s)	301, 498
Sfr274I	CTCGAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	3 cut(s)	375, 1051, 1191
SmlI	CTYRAG	4 cut(s)	73, 114, 278, 783
SmoI	CTYRAG	4 cut(s)	73, 114, 278, 783
SphI	GCATGC	3 cut(s)	374, 782, 1025
Sse9I	AATT	8 cut(s)	9, 143, 264, 410, 638, 864, 990, 1153
SsiI	CCGC	1 cut(s)	765
SspMI	CTAG	2 cut(s)	861, 1236
TaaI	ACNGT	3 cut(s)	244, 523, 740
TaqI	TCGA	4 cut(s)	74, 397, 997, 1177
TasI	AATT	8 cut(s)	9, 143, 264, 410, 638, 864, 990, 1153
TatI	WGTACW	3 cut(s)	239, 379, 1092
TfiI	GAWTC	4 cut(s)	306, 467, 509, 1216
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	6 cut(s)	480, 502, 591, 743, 1020, 1063
TseI	GCWGC	1 cut(s)	559
TspDTI	ATGAA	5 cut(s)	465, 609, 897, 912, 1209
TspRI	CASTG	6 cut(s)	480, 502, 591, 743, 1020, 1063
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	864
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	6 cut(s)	374, 693, 782, 1025, 1056, 1176
XhoI	CTCGAG	1 cut(s)	73
XspI	CTAG	2 cut(s)	861, 1236
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	2 cut(s)	1141, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.