AT1G47578

Plastidial lipoyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005677
Physical Location & Seq
Forward (+)
17484348 .. 17485470
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47578.1

Sequence Viewer

Length: 843 bp
ATGGTTTTTTCCGTTGCAACAAGCTCTGTTACGAACCCAAAGCTCCATCATCACCACCATCTTAGTGACTTCAACAGAAACAGAGTATCTACATCTCTCAAGATAATGAACTCGAAGAATCACACAAACCCAAGAAAGTGTGAGTGTTTTGATCTCTACGATCAATTAATTCCATACAAGAAAGCTTGGTCATGGCAAAAAAGCATTCTCAATGAGAAAAAAGCTTTGATTGATAAAAACCAAGAGTGTTCAGATTCATTAATTATACTACAACATCCTTCTGTTTACACAATGGGAACTGGAAGCTCAGAGAATTATCTCAATTTCGACATAAAGAATGCTCCTTTCGATGTTTATAGAACAGAACGTGGTGGTGAAGTTACTTATCATGGTCCTGGTCAGCTAGTTATGTATCCTATAATCAATCTACGGAATCACAAAATGGATCTTCATTGGTACTTAAGGAAGCTTGAGGAAGTAGTTATTCGTGTTCTTTCTTCGGCTTTCGCCATCAATGCTTCTCGTCTCGACGGTTTTACTGGAGTTTGGGTTGGCAACAAAAAAATGGCGGCGATAGGTATTCGTGTGTCGAAATGGATGACATATCATGGTCTAGCTCTTAATGTTACAACAGATTTAACACCCTTTAACTCCATAGTTCCATGTGGGATAAGGAACCGTGGGGTTGGAAGCGTAAAGGGTTTGATTGAGGATGGAGAACATTATAATAAGCTTGAAGATTTGCAGTTGTTAGATATAGCTCATGAGTCGTTACTAAAGGAATTCTCTGAAGTTTTTCAGCTTCAGATGGAAAAGCAAACAGTATTCAAATTGGAATGCTGA

Protein Analysis

280

Amino Acids

32.08

Weight (kDa)

8.68

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LplA-B_cat PF21948 59 - 236 3.8e-40 Lipoyl protein ligase A/B catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AciI CCGC 1 cut(s) 569
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 2 cut(s) 788, 810
AfaI GTAC 1 cut(s) 458
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 73, 737, 829
AjnI CCWGG 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 782
AseI ATTAAT 2 cut(s) 167, 260
Asp700I GAANNNNTTC 1 cut(s) 795
AspS9I GGNCC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 44, 386
AvaII GGWCC 1 cut(s) 392
BccI CCATC 5 cut(s) 54, 66, 518, 707, 802
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 404, 614
BfrI CTTAAG 1 cut(s) 460
BfuI GTATCC 1 cut(s) 423
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 83, 491
BsaJI CCNNGG 1 cut(s) 679
BsaXI ACNNNNNCTCC 2 cut(s) 534, 564
Bse1I ACTGG 2 cut(s) 304, 544
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 3 cut(s) 274, 603, 718
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 304, 544
BsmAI GTCTC 1 cut(s) 530
BsmBI CGTCTC 1 cut(s) 530
BsmI GAATGC 3 cut(s) 204, 343, 842
Bsp143I GATC 3 cut(s) 151, 160, 445
BspACI CCGC 1 cut(s) 569
BspCNI CTCAG 1 cut(s) 320
BspHI TCATGA 1 cut(s) 763
BspLI GGNNCC 1 cut(s) 677
BspPI GGATC 1 cut(s) 453
BspTI CTTAAG 1 cut(s) 460
BsrI ACTGG 2 cut(s) 304, 544
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 3 cut(s) 151, 160, 445
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 533, 680, 823
BstAFI CTTAAG 1 cut(s) 460
BstDEI CTNAG 2 cut(s) 62, 307
BstDSI CCRYGG 1 cut(s) 679
BstF5I GGATG 3 cut(s) 274, 603, 718
BstKTI GATC 3 cut(s) 154, 163, 448
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 3 cut(s) 151, 160, 445
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BsuI GTATCC 1 cut(s) 423
BtgI CCRYGG 1 cut(s) 679
BtsCI GGATG 3 cut(s) 274, 603, 718
CciI TCATGA 1 cut(s) 763
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 457
CviAII CATG 5 cut(s) 192, 389, 608, 663, 764
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 62, 307
DpnI GATC 3 cut(s) 153, 162, 447
DpnII GATC 3 cut(s) 151, 160, 445
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 788, 810
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 5 cut(s) 195, 392, 611, 666, 767
FatI CATG 5 cut(s) 191, 388, 607, 662, 763
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 3 cut(s) 261, 610, 725
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 2 cut(s) 404, 614
GluI GCNGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 561
Hin1II CATG 5 cut(s) 195, 392, 611, 666, 767
HindIII AAGCTT 4 cut(s) 183, 222, 467, 731
HinfI GANTC 4 cut(s) 118, 254, 433, 767
HphI GGTGA 2 cut(s) 44, 386
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 4 cut(s) 253, 310, 790, 807
Hpy188III TCNNGA 3 cut(s) 100, 527, 764
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 533, 680, 823
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 2 cut(s) 17, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 2 cut(s) 62, 307
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 195, 392, 611, 666, 767
Kzo9I GATC 3 cut(s) 151, 160, 445
LmnI GCTCC 2 cut(s) 48, 346
LpnPI CCDG 4 cut(s) 285, 381, 408, 525
MaeI CTAG 2 cut(s) 404, 614
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 5 cut(s) 28, 65, 379, 625, 771
MalI GATC 3 cut(s) 153, 162, 447
MboI GATC 3 cut(s) 151, 160, 445
MboII GAAGA 4 cut(s) 127, 440, 489, 749
MflI RGATCY 1 cut(s) 445
MluCI AATT 7 cut(s) 164, 168, 261, 313, 322, 782, 830
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 2 cut(s) 466, 703
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 6 cut(s) 167, 260, 461, 621, 638, 648
MslI CAYNNNNRTG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 460
MspR9I CCNGG 1 cut(s) 396
Mva1269I GAATGC 3 cut(s) 204, 343, 842
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 515
NdeII GATC 3 cut(s) 151, 160, 445
NlaIII CATG 5 cut(s) 195, 392, 611, 666, 767
NlaIV GGNNCC 1 cut(s) 677
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 763
PctI GAATGC 3 cut(s) 204, 343, 842
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 3 cut(s) 118, 254, 433
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
PshBI ATTAAT 2 cut(s) 167, 260
PsiI TTATAA 1 cut(s) 726
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 677
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 1 cut(s) 445
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 6 cut(s) 167, 260, 461, 621, 638, 648
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 3 cut(s) 151, 160, 445
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 1 cut(s) 396
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 3 cut(s) 98, 460, 470
SmoI CTYRAG 3 cut(s) 98, 460, 470
Sse9I AATT 7 cut(s) 164, 168, 261, 313, 322, 782, 830
SsiI CCGC 1 cut(s) 569
SspMI CTAG 2 cut(s) 404, 614
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 3 cut(s) 533, 680, 823
TaiI ACGT 1 cut(s) 370
TaqI TCGA 5 cut(s) 113, 327, 348, 528, 590
TasI AATT 7 cut(s) 164, 168, 261, 313, 322, 782, 830
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 3 cut(s) 118, 254, 433
Tru1I TTAA 6 cut(s) 167, 260, 461, 621, 638, 648
Tru9I TTAA 6 cut(s) 167, 260, 461, 621, 638, 648
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 122, 246, 440
TspGWI ACGGA 1 cut(s) 445
Vha464I CTTAAG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 392
VspI ATTAAT 2 cut(s) 167, 260
XapI RAATTY 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 2 cut(s) 404, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.