RchiOBHm_Chr6g0294461

Plastidial lipoyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005677
Physical Location & Seq
Reverse (-)
56771446 .. 56773381
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26428

Sequence Viewer

Length: 954 bp
ATGACTTTCTTGGCGACCCAATGTGTCGTCGCCTCAATCCCAGCATACCCAGTTTGTAATCATCAGCCCAAACCTCCTGGGTGCCTCTCCCAGAGAATCCAATCGAAATCGGACAGAATCCCAGTTGTTAAAACCCAACAGTCGAGCTTTCCAACTAGTCAGGAATCGAGAAGAGAGTCTGAGTGTGAGTGCTTCAATCTGTACAAGGAGCTAGTTCCTTACAGGCAAGCTTGGTCTTGGCAGAAGGGCATTGTCAAGGAGAAAAAGGCTCTGATTGAGAGGAACGAGGACTGCCCGGACTCGCTGTTCGTTCTTCAGCATCCTCCTGTTTATACAATGGGCACCGGTAGCTCAGAAAAGTTCCTCAATTTTGACCTCAACGATGCTCCATTTGATGTTCACCGGACCGAACGCGGCGGCGAGGTTACATATCATGGCCCTGGTCAGATAGTAATGTACCCCATTATAAATCTCCGGAACCACAAAATGGATCTTCATTGGTACCTCAGGTCACTTGAGGAGGTGATCATTCGCGCTCTTTCAAAGACATTTTCGATCAAGGCATCTCGACTTGAGGGCTTAACTGGTGTTTGGCATGGAAACCAGAAACTGGCAGCCATTGGTATACGAGTGTCTCAGTGGATAGCTTATCACGGTTTGGCACTGAACGTAACCACAGATTTAACTCCTTTTCGTTGGATAGTACCGTGTGGTTTACAAAACTATCAGGTCGGAAGCATTAGAGGGTTGTTAGGGGAGTTTGAGTCATTTGACGATAGTAGTAGAAAACAGCTACCAGATCCTGATGATGGCCAGCTACTTAATATTGCTTGTAAATCTTTGATCAATGAGTTTTCAGAAGTATTTCAGGTTGGAATCAATTATGAAACCATCTCGAGGTTAGAGTTTTTAGAAAGTGAACCTGTAAAGTCTCTAAAAGAGGAAGTAATTTAG

Protein Analysis

317

Amino Acids

36.06

Weight (kDa)

6.27

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LplA-B_cat PF21948 74 - 257 2.4e-39 Lipoyl protein ligase A/B catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc65I GGTACC 1 cut(s) 501
AccB1I GGYRCC 3 cut(s) 81, 341, 501
AccB7I CCANNNNNTGG 2 cut(s) 487, 610
AccI GTMKAC 1 cut(s) 625
AccII CGCG 2 cut(s) 414, 534
AccIII TCCGGA 1 cut(s) 474
AciI CCGC 2 cut(s) 414, 417
AclWI GGATC 2 cut(s) 498, 794
AcoI YGGCCR 1 cut(s) 811
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 4 cut(s) 203, 458, 503, 705
AfiI CCNNNNNNNGG 4 cut(s) 487, 610, 809, 897
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 2 cut(s) 196, 543
AhlI ACTAGT 1 cut(s) 155
AjnI CCWGG 2 cut(s) 76, 439
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
AluBI AGCT 7 cut(s) 147, 211, 230, 351, 647, 793, 817
AluI AGCT 7 cut(s) 147, 211, 230, 351, 647, 793, 817
Alw26I GTCTC 2 cut(s) 639, 936
AlwI GGATC 2 cut(s) 498, 794
AlwNI CAGNNNCTG 2 cut(s) 610, 803
Ama87I CYCGRG 1 cut(s) 895
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 2 cut(s) 436, 811
ApeKI GCWGC 1 cut(s) 614
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 864
Asp718I GGTACC 1 cut(s) 501
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 405, 437
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 392, 535
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 1 cut(s) 405
AxyI CCTNAGG 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 344
BalI TGGCCA 1 cut(s) 813
BanI GGYRCC 3 cut(s) 81, 341, 501
BbvI GCAGC 1 cut(s) 626
BccI CCATC 2 cut(s) 803, 899
BciT130I CCWGG 2 cut(s) 78, 441
BclI TGATCA 2 cut(s) 525, 843
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 639, 936
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 2 cut(s) 156, 212
BisI GCNGC 3 cut(s) 415, 418, 615
BlsI GCNGC 3 cut(s) 416, 419, 616
Bme1390I CCNGG 3 cut(s) 78, 296, 441
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 895
BmgT120I GGNCC 2 cut(s) 405, 437
BmiI GGNNCC 4 cut(s) 83, 343, 479, 503
BmrFI CCNGG 3 cut(s) 78, 296, 441
BmrI ACTGGG 2 cut(s) 44, 116
BmsI GCATC 3 cut(s) 328, 373, 572
BmuI ACTGGG 2 cut(s) 44, 116
BpuEI CTTGAG 2 cut(s) 536, 593
BpuMI CCSGG 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 77, 439
BsaWI WCCGGW 3 cut(s) 344, 402, 474
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 4 cut(s) 487, 610, 809, 897
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 4 cut(s) 50, 122, 589, 615
Bse21I CCTNAGG 1 cut(s) 506
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 2 cut(s) 78, 441
BseDI CCNNGG 2 cut(s) 77, 439
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 4 cut(s) 487, 610, 809, 897
BseMII CTCAG 4 cut(s) 171, 366, 520, 650
BseNI ACTGG 4 cut(s) 50, 122, 589, 615
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 40
Bsh1236I CGCG 2 cut(s) 414, 534
BshFI GGCC 2 cut(s) 438, 813
BshNI GGYRCC 3 cut(s) 81, 341, 501
BshTI ACCGGT 1 cut(s) 344
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 4 cut(s) 296, 345, 403, 475
BslI CCNNNNNNNGG 4 cut(s) 487, 610, 809, 897
BsmAI GTCTC 2 cut(s) 639, 936
BsnI GGCC 2 cut(s) 438, 813
BsoBI CYCGRG 1 cut(s) 895
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 474
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 5 cut(s) 490, 525, 555, 799, 843
BspACI CCGC 2 cut(s) 414, 417
BspANI GGCC 2 cut(s) 438, 813
BspCNI CTCAG 4 cut(s) 172, 365, 519, 649
BspEI TCCGGA 1 cut(s) 474
BspFNI CGCG 2 cut(s) 414, 534
BspLI GGNNCC 4 cut(s) 83, 343, 479, 503
BspPI GGATC 2 cut(s) 498, 794
BspT107I GGYRCC 3 cut(s) 81, 341, 501
BsrFI RCCGGY 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 4 cut(s) 50, 122, 589, 615
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 2 cut(s) 77, 439
BssMI GATC 5 cut(s) 490, 525, 555, 799, 843
BssNAI GTATAC 1 cut(s) 626
Bst1107I GTATAC 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 78, 441
Bst4CI ACNGT 3 cut(s) 141, 656, 708
Bst6I CTCTTC 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 228, 815
BstDEI CTNAG 4 cut(s) 180, 352, 506, 636
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 2 cut(s) 414, 534
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 5 cut(s) 493, 528, 558, 802, 846
BstMAI GTCTC 2 cut(s) 639, 936
BstMBI GATC 5 cut(s) 490, 525, 555, 799, 843
BstMWI GCNNNNNNNGC 1 cut(s) 348
BstNI CCWGG 2 cut(s) 78, 441
BstSCI CCNGG 3 cut(s) 76, 294, 439
BstSLI GKGCMC 1 cut(s) 344
BstUI CGCG 2 cut(s) 414, 534
BstV1I GCAGC 1 cut(s) 626
BstX2I RGATCY 2 cut(s) 490, 799
BstYI RGATCY 2 cut(s) 490, 799
BstZ17I GTATAC 1 cut(s) 626
Bsu36I CCTNAGG 1 cut(s) 506
BsuRI GGCC 2 cut(s) 438, 813
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 644, 662
Cac8I GCNNGC 2 cut(s) 228, 815
CaiI CAGNNNCTG 2 cut(s) 610, 803
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 405, 437
CpoI CGGWCCG 1 cut(s) 405
Csp6I GTAC 4 cut(s) 202, 457, 502, 704
CspAI ACCGGT 1 cut(s) 344
CspI CGGWCCG 1 cut(s) 405
CviAII CATG 2 cut(s) 434, 596
CviQI GTAC 4 cut(s) 202, 457, 502, 704
DdeI CTNAG 4 cut(s) 180, 352, 506, 636
DpnI GATC 5 cut(s) 492, 527, 557, 801, 845
DpnII GATC 5 cut(s) 490, 525, 555, 799, 843
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 506
Eco88I CYCGRG 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 76, 439
FaeI CATG 2 cut(s) 437, 599
FaiI YATR 8 cut(s) 46, 333, 430, 435, 467, 597, 626, 885
FatI CATG 2 cut(s) 433, 595
FbaI TGATCA 2 cut(s) 525, 843
FblI GTMKAC 1 cut(s) 625
Fnu4HI GCNGC 3 cut(s) 415, 418, 615
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 415, 418, 615
FspBI CTAG 2 cut(s) 156, 212
GlaI GCGC 1 cut(s) 535
GluI GCNGC 3 cut(s) 415, 418, 615
GsaI CCCAGC 1 cut(s) 44
HaeIII GGCC 2 cut(s) 438, 813
HapII CCGG 4 cut(s) 296, 345, 403, 475
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 437, 599
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 7 cut(s) 96, 117, 164, 176, 299, 764, 876
HpaII CCGG 4 cut(s) 296, 345, 403, 475
HphI GGTGA 2 cut(s) 392, 535
Hpy166II GTNNAC 4 cut(s) 400, 626, 716, 920
Hpy188I TCNGA 7 cut(s) 112, 181, 273, 355, 447, 734, 859
Hpy188III TCNNGA 6 cut(s) 161, 168, 475, 567, 803, 895
Hpy8I GTNNAC 4 cut(s) 400, 626, 716, 920
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 141, 656, 708
HpyCH4IV ACGT 1 cut(s) 669
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 4 cut(s) 180, 352, 506, 636
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 2 cut(s) 437, 599
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 474
KpnI GGTACC 1 cut(s) 505
Ksp22I TGATCA 2 cut(s) 525, 843
Kzo9I GATC 5 cut(s) 490, 525, 555, 799, 843
LmnI GCTCC 2 cut(s) 208, 391
Lsp1109I GCAGC 1 cut(s) 626
LweI GCATC 3 cut(s) 328, 373, 572
MaeI CTAG 2 cut(s) 156, 212
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 3 cut(s) 424, 510, 670
MalI GATC 5 cut(s) 492, 527, 557, 801, 845
MboI GATC 5 cut(s) 490, 525, 555, 799, 843
MboII GAAGA 3 cut(s) 183, 305, 485
MflI RGATCY 2 cut(s) 490, 799
MhlI GDGCHC 1 cut(s) 344
MlsI TGGCCA 1 cut(s) 813
MluCI AATT 3 cut(s) 367, 880, 948
MluNI TGGCCA 1 cut(s) 813
MlyI GAGTC 3 cut(s) 185, 293, 773
MmeI TCCRAC 4 cut(s) 176, 677, 712, 853
Mox20I TGGCCA 1 cut(s) 813
MroI TCCGGA 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 864
MscI TGGCCA 1 cut(s) 813
MseI TTAA 4 cut(s) 129, 581, 683, 822
Msp20I TGGCCA 1 cut(s) 813
MspI CCGG 4 cut(s) 296, 345, 403, 475
MspR9I CCNGG 3 cut(s) 78, 296, 441
MvaI CCWGG 2 cut(s) 78, 441
MvnI CGCG 2 cut(s) 414, 534
MwoI GCNNNNNNNGC 1 cut(s) 348
NciI CCSGG 1 cut(s) 296
NdeII GATC 5 cut(s) 490, 525, 555, 799, 843
NlaIII CATG 2 cut(s) 437, 599
NlaIV GGNNCC 4 cut(s) 83, 343, 479, 503
NmuCI GTSAC 1 cut(s) 510
PaeR7I CTCGAG 1 cut(s) 895
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 4 cut(s) 96, 117, 164, 876
PflMI CCANNNNNTGG 2 cut(s) 487, 610
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 3 cut(s) 416, 419, 616
PleI GAGTC 3 cut(s) 184, 293, 772
PpsI GAGTC 3 cut(s) 184, 293, 772
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 76, 439
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 76, 439
PspN4I GGNNCC 4 cut(s) 83, 343, 479, 503
PspPI GGNCC 2 cut(s) 405, 437
PstNI CAGNNNCTG 2 cut(s) 610, 803
PsuI RGATCY 2 cut(s) 490, 799
RsaI GTAC 4 cut(s) 203, 458, 503, 705
RsaNI GTAC 4 cut(s) 202, 457, 502, 704
Rsr2I CGGWCCG 1 cut(s) 405
RsrII CGGWCCG 1 cut(s) 405
SaqAI TTAA 4 cut(s) 129, 581, 683, 822
SatI GCNGC 3 cut(s) 415, 418, 615
Sau3AI GATC 5 cut(s) 490, 525, 555, 799, 843
Sau96I GGNCC 2 cut(s) 405, 437
SchI GAGTC 3 cut(s) 185, 293, 773
ScrFI CCNGG 3 cut(s) 78, 296, 441
SduI GDGCHC 1 cut(s) 344
SfaNI GCATC 3 cut(s) 328, 373, 572
Sfr274I CTCGAG 1 cut(s) 895
SinI GGWCC 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 895
SmlI CTYRAG 3 cut(s) 515, 572, 895
SmoI CTYRAG 3 cut(s) 515, 572, 895
SpeI ACTAGT 1 cut(s) 155
Sse9I AATT 3 cut(s) 367, 880, 948
SsiI CCGC 2 cut(s) 414, 417
SspI AATATT 1 cut(s) 826
SspMI CTAG 2 cut(s) 156, 212
StyD4I CCNGG 3 cut(s) 76, 294, 439
TaaI ACNGT 3 cut(s) 141, 656, 708
TaiI ACGT 1 cut(s) 672
TaqI TCGA 6 cut(s) 104, 143, 167, 554, 568, 896
TaqII GACCGA 1 cut(s) 422
TasI AATT 3 cut(s) 367, 880, 948
TatI WGTACW 1 cut(s) 201
TauI GCSGC 2 cut(s) 417, 420
TfiI GAWTC 4 cut(s) 96, 117, 164, 876
Tru1I TTAA 4 cut(s) 129, 581, 683, 822
Tru9I TTAA 4 cut(s) 129, 581, 683, 822
TscAI CASTG 2 cut(s) 644, 669
TseFI GTSAC 1 cut(s) 510
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 510
TspDTI ATGAA 2 cut(s) 485, 900
TspRI CASTG 2 cut(s) 644, 669
Van91I CCANNNNNTGG 2 cut(s) 487, 610
VpaK11BI GGWCC 1 cut(s) 405
XhoI CTCGAG 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 625
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 2 cut(s) 156, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.