Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8046078.1

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 523

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8046078.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 328 bp

ctgattgagaggaatcaggactgcccggactcgctgtttgttcttcagcatcctcctgtttatacaatgggcaccggtagctcagaagagttcctcaattttgacctcaaggatgctccatttgatgttcatcggaccgaacgcggcggtgaggttacatatcacggtcctggtcagatagtaatgtaccccattatgaatctccgaaatcacaaaatggatcttcattggtacctcaggtcacttgaggaggtgatcattcgcgctctttcaaagacattttcaatcaaggcatctcgacttgagggcttaactggtgtttggcatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

109

Amino Acids

12.6

Weight (kDa)

6.05

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	231
AccB1I	GGYRCC	2 cut(s)	71, 231
AccII	CGCG	2 cut(s)	144, 264
AciI	CCGC	2 cut(s)	144, 147
AclWI	GGATC	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	188, 233
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	273, 285
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
AlwI	GGATC	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AsiGI	ACCGGT	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	135, 167
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	161, 265
AvaII	GGWCC	2 cut(s)	135, 167
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	71, 231
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	26, 171
Bme18I	GGWCC	2 cut(s)	135, 167
BmgT120I	GGNCC	2 cut(s)	135, 167
BmiI	GGNNCC	2 cut(s)	73, 233
BmrFI	CCNGG	2 cut(s)	26, 171
BmsI	GCATC	3 cut(s)	58, 103, 302
BpuEI	CTTGAG	3 cut(s)	92, 266, 323
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	319
Bse21I	CCTNAGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	49, 118
BseJI	GATNNNNATC	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	96, 250
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	144, 264
BshNI	GGYRCC	2 cut(s)	71, 231
BshTI	ACCGGT	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	26, 75
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	220, 255
BspACI	CCGC	2 cut(s)	144, 147
BspCNI	CTCAG	2 cut(s)	95, 249
BspFNI	CGCG	2 cut(s)	144, 264
BspLI	GGNNCC	2 cut(s)	73, 233
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	71, 231
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	2 cut(s)	220, 255
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	82, 236
BstF5I	GGATG	2 cut(s)	49, 118
BstFNI	CGCG	2 cut(s)	144, 264
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	223, 258
BstMBI	GATC	2 cut(s)	220, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	24, 169
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	2 cut(s)	144, 264
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	49, 118
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	135, 167
CpoI	CGGWCCG	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	187, 232
CspAI	ACCGGT	1 cut(s)	74
CspI	CGGWCCG	1 cut(s)	135
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	2 cut(s)	81, 309
CviKI_1	RGCY	2 cut(s)	81, 309
CviQI	GTAC	2 cut(s)	187, 232
DdeI	CTNAG	2 cut(s)	82, 236
DpnI	GATC	2 cut(s)	222, 257
DpnII	GATC	2 cut(s)	220, 255
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	135, 167
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	169
FaiI	YATR	4 cut(s)	63, 160, 197, 327
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	36, 125
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	145
HapII	CCGG	2 cut(s)	26, 75
HhaI	GCGC	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	3 cut(s)	13, 29, 199
HpaII	CCGG	2 cut(s)	26, 75
HphI	GGTGA	2 cut(s)	161, 265
Hpy188I	TCNGA	4 cut(s)	85, 135, 177, 206
Hpy188III	TCNNGA	2 cut(s)	17, 297
HpyCH4III	ACNGT	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	2 cut(s)	82, 236
HspAI	GCGC	1 cut(s)	264
KpnI	GGTACC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	220, 255
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	2, 39, 69, 88, 156, 183, 223, 300
LweI	GCATC	3 cut(s)	58, 103, 302
MaeIII	GTNAC	2 cut(s)	154, 240
MalI	GATC	2 cut(s)	222, 257
MboI	GATC	2 cut(s)	220, 255
MboII	GAAGA	3 cut(s)	35, 98, 215
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	9 cut(s)	3, 63, 104, 116, 145, 241, 244, 245, 298
MseI	TTAA	1 cut(s)	311
MspI	CCGG	2 cut(s)	26, 75
MspR9I	CCNGG	2 cut(s)	26, 171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	2 cut(s)	144, 264
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	2 cut(s)	220, 255
NlaIV	GGNNCC	2 cut(s)	73, 233
NmuCI	GTSAC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	13, 199
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	73, 233
PspPI	GGNCC	2 cut(s)	135, 167
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	188, 233
RsaNI	GTAC	2 cut(s)	187, 232
Rsr2I	CGGWCCG	1 cut(s)	135
RsrII	CGGWCCG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	220, 255
Sau96I	GGNCC	2 cut(s)	135, 167
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	26, 171
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	6 cut(s)	83, 108, 156, 237, 242, 255
SfaNI	GCATC	3 cut(s)	58, 103, 302
SinI	GGWCC	2 cut(s)	135, 167
SmlI	CTYRAG	3 cut(s)	107, 245, 302
SmoI	CTYRAG	3 cut(s)	107, 245, 302
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	144, 147
StyD4I	CCNGG	2 cut(s)	24, 169
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	298
TaqII	GACCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	13, 199
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	3 cut(s)	119, 212, 215
VpaK11BI	GGWCC	2 cut(s)	135, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.