Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004706.1

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Forward (+)

1747 .. 2971

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004706.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgactttcttggcgacccaatgtgttgttgcctcaatcccaacatacccagtttctaatcatcagcccaaacggtgcctctcccagagaatccaatcgaaatcggacagaatcccagttgttaaaacccaacagttgagctttccaactacttgggaatcgagaagagagtctgagtgtgagtgcttcaatctgtacaaggaactagttccttaccggcaagcttggttttggcagaagagcattgtcaaggagaaaaaggctctgattgagaggaatcaggactgcccggactcgctgtttgttcttcagcatcctcctgtttatacaatgggcaccggtagctcagaagagttcctcaattttgacctcaaggatactccatttgatgttcatcggaccgaacgcggcggtgaggttacatatcacggtcctggtcagatagtaatgtaccccattatgaatctccgaaatcacaaaatggatcttcattggtacctcaggtcacttgaggaggtgatcattcgcgctctttcaaagacattttcaatcaaggcatctcgacttgagggcttaactggtgtttggcatggaaaccagaaactggcagccattggtatacgagtgtctcactggatagcttatcacggtttggcactgaacgtaaccacagatttaactccttttggttggatagtaccgtgtggtttacaaaactatcaggttggaagcattagagggttgttgggggagtttgattcatttgacaatagtagtagaaaacagctaccagatcctgatgatggccagcttcttgatattgcttgtaaatctttgatcaatgagttttcagaagtttttcaggttggaatcaattatgaaaccatctcgaggttagagtttttagaaagtgaactggtaaagcctctaaaagaggaagtaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

315

Amino Acids

36.16

Weight (kDa)

6.32

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	3 cut(s)	75, 335, 495
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	619
AccII	CGCG	2 cut(s)	408, 528
AciI	CCGC	2 cut(s)	408, 411
AclWI	GGATC	2 cut(s)	492, 788
AcoI	YGGCCR	1 cut(s)	805
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	4 cut(s)	197, 452, 497, 699
AfiI	CCNNNNNNNGG	3 cut(s)	604, 803, 891
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	190, 537, 549
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	141, 224, 345, 641, 787, 811
AluI	AGCT	6 cut(s)	141, 224, 345, 641, 787, 811
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	492, 788
AlwNI	CAGNNNCTG	2 cut(s)	604, 797
Ama87I	CYCGRG	1 cut(s)	889
AoxI	GGCC	1 cut(s)	805
ApeKI	GCWGC	1 cut(s)	608
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	207, 858
Asp718I	GGTACC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	399, 431
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	425, 529
AvaI	CYCGRG	1 cut(s)	889
AvaII	GGWCC	2 cut(s)	399, 431
AxyI	CCTNAGG	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	807
BanI	GGYRCC	3 cut(s)	75, 335, 495
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	2 cut(s)	797, 893
BciT130I	CCWGG	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	370
BclI	TGATCA	2 cut(s)	519, 837
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	633
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	409, 609
BlsI	GCNGC	2 cut(s)	410, 610
Bme1390I	CCNGG	2 cut(s)	290, 435
Bme18I	GGWCC	2 cut(s)	399, 431
BmeT110I	CYCGRG	1 cut(s)	889
BmgT120I	GGNCC	2 cut(s)	399, 431
BmiI	GGNNCC	3 cut(s)	77, 337, 497
BmrFI	CCNGG	2 cut(s)	290, 435
BmrI	ACTGGG	2 cut(s)	44, 110
BmsI	GCATC	2 cut(s)	322, 566
BmuI	ACTGGG	2 cut(s)	44, 110
BpuEI	CTTGAG	3 cut(s)	356, 530, 587
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 803, 891
Bse118I	RCCGGY	2 cut(s)	216, 338
Bse1I	ACTGG	6 cut(s)	50, 116, 583, 609, 638, 921
Bse21I	CCTNAGG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	604, 803, 891
BseMII	CTCAG	3 cut(s)	165, 360, 514
BseNI	ACTGG	6 cut(s)	50, 116, 583, 609, 638, 921
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	620
Bsh1236I	CGCG	2 cut(s)	408, 528
BshFI	GGCC	1 cut(s)	807
BshNI	GGYRCC	3 cut(s)	75, 335, 495
BshTI	ACCGGT	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	889
BsiSI	CCGG	3 cut(s)	217, 290, 339
BslI	CCNNNNNNNGG	3 cut(s)	604, 803, 891
BsmAI	GTCTC	1 cut(s)	633
BsnI	GGCC	1 cut(s)	807
BsoBI	CYCGRG	1 cut(s)	889
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	4 cut(s)	484, 519, 793, 837
BspACI	CCGC	2 cut(s)	408, 411
BspANI	GGCC	1 cut(s)	807
BspCNI	CTCAG	3 cut(s)	166, 359, 513
BspFNI	CGCG	2 cut(s)	408, 528
BspLI	GGNNCC	3 cut(s)	77, 337, 497
BspPI	GGATC	2 cut(s)	492, 788
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	3 cut(s)	75, 335, 495
BsrFI	RCCGGY	2 cut(s)	216, 338
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	6 cut(s)	50, 116, 583, 609, 638, 921
BssAI	RCCGGY	2 cut(s)	216, 338
BssMI	GATC	4 cut(s)	484, 519, 793, 837
BssNAI	GTATAC	1 cut(s)	620
Bst1107I	GTATAC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	5 cut(s)	75, 135, 431, 650, 702
Bst6I	CTCTTC	3 cut(s)	160, 233, 345
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	222, 809
BstDEI	CTNAG	3 cut(s)	174, 346, 500
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	408, 528
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	4 cut(s)	487, 522, 796, 840
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	4 cut(s)	484, 519, 793, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	288, 433
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	2 cut(s)	408, 528
BstV1I	GCAGC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	484, 793
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	2 cut(s)	484, 793
BstZ17I	GTATAC	1 cut(s)	620
Bsu36I	CCTNAGG	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	807
BtsCI	GGATG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	631, 656
Cac8I	GCNNGC	2 cut(s)	222, 809
CaiI	CAGNNNCTG	2 cut(s)	604, 797
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	2 cut(s)	216, 338
Cfr13I	GGNCC	2 cut(s)	399, 431
CpoI	CGGWCCG	1 cut(s)	399
Csp6I	GTAC	4 cut(s)	196, 451, 496, 698
CspAI	ACCGGT	1 cut(s)	338
CspI	CGGWCCG	1 cut(s)	399
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	4 cut(s)	196, 451, 496, 698
DdeI	CTNAG	3 cut(s)	174, 346, 500
DpnI	GATC	4 cut(s)	486, 521, 795, 839
DpnII	GATC	4 cut(s)	484, 519, 793, 837
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	160, 233, 345
EarI	CTCTTC	3 cut(s)	160, 233, 345
Eco47I	GGWCC	2 cut(s)	399, 431
Eco57I	CTGAAG	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	1 cut(s)	593
FaiI	YATR	7 cut(s)	46, 327, 424, 461, 591, 620, 879
FatI	CATG	1 cut(s)	589
FbaI	TGATCA	2 cut(s)	519, 837
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	409, 609
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	409, 609
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	2 cut(s)	409, 609
HaeIII	GGCC	1 cut(s)	807
HapII	CCGG	3 cut(s)	217, 290, 339
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	1 cut(s)	593
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	9 cut(s)	90, 111, 158, 170, 277, 293, 463, 758, 870
HpaII	CCGG	3 cut(s)	217, 290, 339
HphI	GGTGA	2 cut(s)	425, 529
Hpy166II	GTNNAC	3 cut(s)	620, 710, 914
Hpy188I	TCNGA	8 cut(s)	106, 175, 267, 349, 399, 441, 470, 853
Hpy188III	TCNNGA	6 cut(s)	162, 281, 561, 797, 815, 889
Hpy8I	GTNNAC	3 cut(s)	620, 710, 914
HpyCH4III	ACNGT	5 cut(s)	75, 135, 431, 650, 702
HpyCH4IV	ACGT	1 cut(s)	663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	3 cut(s)	174, 346, 500
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	1 cut(s)	593
HspAI	GCGC	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	499
Ksp22I	TGATCA	2 cut(s)	519, 837
Kzo9I	GATC	4 cut(s)	484, 519, 793, 837
LguI	GCTCTTC	1 cut(s)	233
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	2 cut(s)	322, 566
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	3 cut(s)	418, 504, 664
MalI	GATC	4 cut(s)	486, 521, 795, 839
MboI	GATC	4 cut(s)	484, 519, 793, 837
MboII	GAAGA	5 cut(s)	177, 250, 299, 362, 479
MflI	RGATCY	2 cut(s)	484, 793
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	3 cut(s)	361, 874, 942
MluNI	TGGCCA	1 cut(s)	807
MlyI	GAGTC	2 cut(s)	179, 287
MmeI	TCCRAC	4 cut(s)	170, 671, 706, 847
Mox20I	TGGCCA	1 cut(s)	807
MroXI	GAANNNNTTC	2 cut(s)	207, 858
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	3 cut(s)	123, 575, 677
Msp20I	TGGCCA	1 cut(s)	807
MspI	CCGG	3 cut(s)	217, 290, 339
MspR9I	CCNGG	2 cut(s)	290, 435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	2 cut(s)	408, 528
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	4 cut(s)	484, 519, 793, 837
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	3 cut(s)	77, 337, 497
NmuCI	GTSAC	1 cut(s)	504
PaeR7I	CTCGAG	1 cut(s)	889
PciSI	GCTCTTC	1 cut(s)	233
PdmI	GAANNNNTTC	2 cut(s)	207, 858
PfeI	GAWTC	7 cut(s)	90, 111, 158, 277, 463, 758, 870
PflMI	CCANNNNNTGG	1 cut(s)	604
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	2 cut(s)	410, 610
PleI	GAGTC	2 cut(s)	178, 287
PpsI	GAGTC	2 cut(s)	178, 287
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	77, 337, 497
PspPI	GGNCC	2 cut(s)	399, 431
PstNI	CAGNNNCTG	2 cut(s)	604, 797
PsuI	RGATCY	2 cut(s)	484, 793
RsaI	GTAC	4 cut(s)	197, 452, 497, 699
RsaNI	GTAC	4 cut(s)	196, 451, 496, 698
Rsr2I	CGGWCCG	1 cut(s)	399
RsrII	CGGWCCG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	123, 575, 677
SatI	GCNGC	2 cut(s)	409, 609
Sau3AI	GATC	4 cut(s)	484, 519, 793, 837
Sau96I	GGNCC	2 cut(s)	399, 431
SchI	GAGTC	2 cut(s)	179, 287
ScrFI	CCNGG	2 cut(s)	290, 435
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	322, 566
Sfr274I	CTCGAG	1 cut(s)	889
SinI	GGWCC	2 cut(s)	399, 431
SlaI	CTCGAG	1 cut(s)	889
SmlI	CTYRAG	4 cut(s)	371, 509, 566, 889
SmoI	CTYRAG	4 cut(s)	371, 509, 566, 889
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	3 cut(s)	361, 874, 942
SsiI	CCGC	2 cut(s)	408, 411
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	2 cut(s)	288, 433
TaaI	ACNGT	5 cut(s)	75, 135, 431, 650, 702
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	98, 161, 562, 890
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	3 cut(s)	361, 874, 942
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	7 cut(s)	90, 111, 158, 277, 463, 758, 870
Tru1I	TTAA	3 cut(s)	123, 575, 677
Tru9I	TTAA	3 cut(s)	123, 575, 677
TscAI	CASTG	2 cut(s)	638, 663
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	5 cut(s)	383, 476, 479, 750, 894
TspRI	CASTG	2 cut(s)	638, 663
Van91I	CCANNNNNTGG	1 cut(s)	604
VpaK11BI	GGWCC	2 cut(s)	399, 431
XhoI	CTCGAG	1 cut(s)	889
XmiI	GTMKAC	1 cut(s)	619
XmnI	GAANNNNTTC	2 cut(s)	207, 858
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.