Rorug05G0429500

Plastidial lipoyltransferase 2-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
59735409 .. 59741686
6278 bp
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UTR
Exon/CDS
Intron
Rorug05G0429500.1

Sequence Viewer

Length: 567 bp
ATGGACTTAAAATTTGCATCATCTAAAAGTATAAGTTATATCCTTACTGTGGACACTGTGACTGTAAAAAATTGTGGGGGTAGTGTTCCAACTGTTTCATTTCTTGTTATGAACTTCCTTTGGTCGCTGAGTAAACCTTTTGCTATATCATCATTTGCTGAAGAAAGAAACCTGATCCTAGAAGCATTGTCTCCTAAGTTATATGTTTGCCTTGTGGCATTCAAAGCTGTTCACTGTTTGTACACCCACTCATTCATCAGTGATGCACCAGAGTATGCACCTGGTACACAGAAGTCGAATGTGTCAGGGGAAGTTATTAGGTGGAATAATGTTTCTGGCCCTGAGAAAATAGATGCTAAGAAGTACATAGAGTTACTTGAAGCAGAGATTGAGGAATTGAATAATGAAGTTGGTAGGAAATCTGCAAATGGACAAAATGAATTGTTGGAGTATCTCAAGTCTCTCGAGCCCCAAAATTTAAAGGAGTTGACTAGTACTGCTGGAGGACGATGTTGTGGTTGCAATGGATACATTCATCAAGCGGCTTTTGGCTGTTTCAGATCCTAG

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

5.95

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 169, 555
AcsI RAATTY 2 cut(s) 11, 475
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 4 cut(s) 242, 286, 365, 496
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 223, 380, 400
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Alw26I GTCTC 2 cut(s) 195, 465
AlwI GGATC 2 cut(s) 169, 555
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 2 cut(s) 11, 475
ArsI GACNNNNNNTTYG 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 464
BanII GRGCYC 1 cut(s) 471
BciT130I CCWGG 1 cut(s) 282
BciVI GTATCC 1 cut(s) 521
BcoDI GTCTC 2 cut(s) 195, 465
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 3 cut(s) 179, 492, 565
BfuI GTATCC 1 cut(s) 521
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 26, 253, 343
BpmI CTGGAG 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 119, 333
BshFI GGCC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 464
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 195, 465
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 471
Bsp1407I TGTACA 1 cut(s) 240
Bsp143I GATC 2 cut(s) 174, 560
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 2 cut(s) 120, 334
BspPI GGATC 2 cut(s) 169, 555
BsrDI GCAATG 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 240
BssMI GATC 2 cut(s) 174, 560
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 5 cut(s) 49, 58, 64, 94, 236
BstAUI TGTACA 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 128, 195, 342, 357
BstKTI GATC 2 cut(s) 177, 563
BstMAI GTCTC 2 cut(s) 195, 465
BstMBI GATC 2 cut(s) 174, 560
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuI GTATCC 1 cut(s) 521
BsuRI GGCC 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 54, 232, 265
Cfr13I GGNCC 1 cut(s) 338
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 4 cut(s) 241, 285, 364, 495
CviJI RGCY 5 cut(s) 227, 339, 469, 545, 552
CviKI_1 RGCY 5 cut(s) 227, 339, 469, 545, 552
CviQI GTAC 4 cut(s) 241, 285, 364, 495
DdeI CTNAG 4 cut(s) 128, 195, 342, 357
DpnI GATC 2 cut(s) 176, 562
DpnII GATC 2 cut(s) 174, 560
DraI TTTAAA 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 471
FaiI YATR 8 cut(s) 32, 39, 110, 146, 202, 204, 276, 368
Fnu4HI GCNGC 1 cut(s) 543
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 3 cut(s) 179, 492, 565
GluI GCNGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
Hpy166II GTNNAC 6 cut(s) 52, 134, 232, 243, 287, 489
Hpy188I TCNGA 1 cut(s) 560
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 6 cut(s) 52, 134, 232, 243, 287, 489
HpyCH4III ACNGT 5 cut(s) 49, 58, 64, 94, 236
HpyCH4V TGCA 5 cut(s) 17, 266, 278, 425, 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 128, 195, 342, 357
Kzo9I GATC 2 cut(s) 174, 560
LpnPI CCDG 8 cut(s) 185, 267, 282, 291, 294, 321, 354, 486
LweI GCATC 3 cut(s) 26, 253, 343
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 3 cut(s) 179, 492, 565
MaeIII GTNAC 2 cut(s) 58, 372
MalI GATC 2 cut(s) 176, 562
MboI GATC 2 cut(s) 174, 560
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 5 cut(s) 11, 70, 395, 440, 475
MmeI TCCRAC 2 cut(s) 113, 426
MnlI CCTC 2 cut(s) 385, 497
MseI TTAA 2 cut(s) 8, 479
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 2 cut(s) 174, 560
NmuCI GTSAC 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 464
PctI GAATGC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 544
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspPI GGNCC 1 cut(s) 338
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 4 cut(s) 242, 286, 365, 496
RsaNI GTAC 4 cut(s) 241, 285, 364, 495
SaqAI TTAA 2 cut(s) 8, 479
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 2 cut(s) 174, 560
Sau96I GGNCC 1 cut(s) 338
ScaI AGTACT 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 471
SetI ASST 5 cut(s) 139, 174, 229, 283, 323
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 3 cut(s) 26, 253, 343
Sfr274I CTCGAG 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 455, 464
SmoI CTYRAG 2 cut(s) 455, 464
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 5 cut(s) 11, 70, 395, 440, 475
SsiI CCGC 1 cut(s) 542
SspMI CTAG 3 cut(s) 179, 492, 565
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 5 cut(s) 49, 58, 64, 94, 236
TaqI TCGA 2 cut(s) 296, 465
TasI AATT 5 cut(s) 11, 70, 395, 440, 475
TatI WGTACW 3 cut(s) 240, 363, 494
TauI GCSGC 1 cut(s) 545
Tru1I TTAA 2 cut(s) 8, 479
Tru9I TTAA 2 cut(s) 8, 479
TscAI CASTG 3 cut(s) 61, 239, 265
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 6 cut(s) 87, 125, 244, 420, 453, 524
TspRI CASTG 3 cut(s) 61, 239, 265
XapI RAATTY 2 cut(s) 11, 475
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 3 cut(s) 179, 492, 565
ZrmI AGTACT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.