Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Forward (+)

1373791 .. 1376833

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G012900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACTCTCACGGCAACTCATTGTGTCGCCTCAATCCCAACATACCCAATCTGCAAGCATCAACATAAACCTCCTCGATCTCTCTCCCGGCGGATCTTATCAAGATCAAATAGAGTCTCAAATGTTAAAATTCCGCAGTCGACCTCTTTAACCTTCGAGCCAAGAAACGAGTGTGAGTGCTTCAATCTGTACGAGCAGCAGGTTCCATATGAACAGGCGTGGGCTTGGCAGAAGAGCATAGTTAACGAGAAAAAAACTTTGATTCAGAGGAATGAGGATTGCTCGGACTCGCTGTTTGTTCTTCAGCACCGTCCTGTGTATACCTTGGGGACTGCTAGTTCAGAGCAGTTCCTTAATTTTGACGTCAAGGACTCACCTTTTGACATTTATCGAACCGAACGTGGCGGCGAGGTTACATATCATGGTCCTGGTCAGATAGTTATGTACCCCATTATGAATCTCCGAAATCACAAGATGGATCTTCATTGGTACCTCAGGTCACTTGAGGAGGTGATCATCCGTGCGCTTTCAAAGACATTTTGTATCAAGGCATCACGGCTTGAGGGCCTCACTGGTGTTTGGCATGGAACCCAGAAACTGGCAGCCATCGGAATACGAGTATTACAGTGGATAACGTATCATGGCTTAGCGTTGAATGTCACCACTGACTTAACCCCTTTTCATTCGATAGTGCCCTGCGGGTTACGAGACTATCAGGTTGGAAGTGTTAGAGGCTTGCTGAAGGAATTTCAGTCATCCACTGACTGCGAAAGAGCACGTCTACCTGATCCTGATGATGGCCAGCTACTTGATATTACTTGTAAATCTTTGATCAAAGAGTTTTCAGAAGTTTTCCAGGTTAGAATCAATTATGAAACCATCTCAAGGTTGGAGTTATTAGAAAGGAAACCTGTAAACCATTTGGAAGAGGAAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

314

Amino Acids

36.11

Weight (kDa)

7.61

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	366
Acc36I	ACCTGC	1 cut(s)	190
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccI	GTMKAC	3 cut(s)	140, 320, 781
AciI	CCGC	4 cut(s)	91, 134, 405, 699
AclWI	GGATC	3 cut(s)	101, 486, 782
AcoI	YGGCCR	1 cut(s)	799
AcsI	RAATTY	2 cut(s)	129, 746
AcuI	CTGAAG	2 cut(s)	287, 761
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	3 cut(s)	191, 446, 491
AfiI	CCNNNNNNNGG	3 cut(s)	598, 797, 885
AgsI	TTSAA	3 cut(s)	184, 531, 655
AjiI	CACGTC	1 cut(s)	779
AjnI	CCWGG	2 cut(s)	427, 855
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	1 cut(s)	805
AluI	AGCT	1 cut(s)	805
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	2 cut(s)	121, 702
AlwI	GGATC	3 cut(s)	101, 486, 782
AlwNI	CAGNNNCTG	1 cut(s)	598
AoxI	GGCC	2 cut(s)	565, 799
ApeKI	GCWGC	2 cut(s)	196, 602
ApoI	RAATTY	2 cut(s)	129, 746
ArsI	GACNNNNNNTTYG	4 cut(s)	278, 310, 362, 394
Asp718I	GGTACC	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	2 cut(s)	425, 565
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	3 cut(s)	366, 523, 652
AvaII	GGWCC	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	696
BalI	TGGCCA	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	778
BbvI	GCAGC	2 cut(s)	208, 614
BccI	CCATC	4 cut(s)	469, 614, 791, 887
BceAI	ACGGC	2 cut(s)	27, 572
BciT130I	CCWGG	2 cut(s)	429, 857
BclI	TGATCA	2 cut(s)	513, 831
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	121, 702
BfaI	CTAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	3 cut(s)	197, 406, 603
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	3 cut(s)	198, 407, 604
Bme1390I	CCNGG	3 cut(s)	88, 429, 857
Bme18I	GGWCC	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	425, 565
BmiI	GGNNCC	3 cut(s)	204, 491, 589
BmrFI	CCNGG	3 cut(s)	88, 429, 857
BmsI	GCATC	2 cut(s)	67, 560
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu1102I	GCTNAGC	1 cut(s)	646
BpuEI	CTTGAG	3 cut(s)	524, 581, 868
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	3 cut(s)	598, 797, 885
Bse1I	ACTGG	2 cut(s)	577, 603
Bse21I	CCTNAGG	1 cut(s)	494
BseBI	CCWGG	2 cut(s)	429, 857
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	516, 755
BseLI	CCNNNNNNNGG	3 cut(s)	598, 797, 885
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	2 cut(s)	577, 603
BseRI	GAGGAG	2 cut(s)	63, 521
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	2 cut(s)	208, 614
BshFI	GGCC	2 cut(s)	567, 801
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	778
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	3 cut(s)	598, 797, 885
BsmAI	GTCTC	2 cut(s)	121, 702
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	567, 801
Bsp1286I	GDGCHC	2 cut(s)	696, 778
Bsp143I	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
Bsp1720I	GCTNAGC	1 cut(s)	646
BspACI	CCGC	4 cut(s)	91, 134, 405, 699
BspANI	GGCC	2 cut(s)	567, 801
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	204, 491, 589
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	3 cut(s)	101, 486, 782
BspQI	GCTCTTC	1 cut(s)	227
BspT107I	GGYRCC	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	577, 603
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
BssNAI	GTATAC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	429, 857
Bst4CI	ACNGT	2 cut(s)	311, 627
Bst6I	CTCTTC	2 cut(s)	227, 921
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	3 cut(s)	56, 737, 803
BstDEI	CTNAG	2 cut(s)	494, 646
BstF5I	GGATG	2 cut(s)	516, 755
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	7 cut(s)	80, 96, 107, 481, 516, 790, 834
BstMAI	GTCTC	2 cut(s)	121, 702
BstMBI	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
BstNI	CCWGG	2 cut(s)	429, 857
BstSCI	CCNGG	3 cut(s)	86, 427, 855
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	208, 614
BstX2I	RGATCY	2 cut(s)	93, 478
BstYI	RGATCY	2 cut(s)	93, 478
BstZ17I	GTATAC	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	2 cut(s)	567, 801
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	516, 755
BtsIMutI	CAGTG	4 cut(s)	570, 632, 663, 759
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	56, 737, 803
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	425, 565
Csp6I	GTAC	3 cut(s)	190, 445, 490
CviAII	CATG	3 cut(s)	422, 584, 641
CviJI	RGCY	9 cut(s)	160, 224, 559, 567, 605, 645, 735, 801, 805
CviKI_1	RGCY	9 cut(s)	160, 224, 559, 567, 605, 645, 735, 801, 805
CviQI	GTAC	3 cut(s)	190, 445, 490
DdeI	CTNAG	2 cut(s)	494, 646
DpnI	GATC	7 cut(s)	79, 95, 106, 480, 515, 789, 833
DpnII	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
EaeI	YGGCCR	1 cut(s)	799
Eam1104I	CTCTTC	2 cut(s)	227, 921
EarI	CTCTTC	2 cut(s)	227, 921
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	2 cut(s)	287, 761
Eco81I	CCTNAGG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	427, 855
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	3 cut(s)	425, 587, 644
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	3 cut(s)	421, 583, 640
FauI	CCCGC	1 cut(s)	692
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	2 cut(s)	513, 831
FblI	GTMKAC	3 cut(s)	140, 320, 781
Fnu4HI	GCNGC	3 cut(s)	197, 406, 603
FokI	GGATG	2 cut(s)	503, 742
Fsp4HI	GCNGC	3 cut(s)	197, 406, 603
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	3 cut(s)	197, 406, 603
HaeIII	GGCC	2 cut(s)	567, 801
HapII	CCGG	1 cut(s)	88
HhaI	GCGC	1 cut(s)	526
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	425, 587, 644
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	141, 244
HindII	GTYRAC	2 cut(s)	141, 244
HinfI	GANTC	7 cut(s)	4, 114, 262, 287, 371, 457, 864
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	366, 523, 652
Hpy166II	GTNNAC	5 cut(s)	141, 244, 321, 782, 916
Hpy188I	TCNGA	7 cut(s)	267, 286, 343, 435, 464, 611, 847
Hpy188III	TCNNGA	2 cut(s)	102, 791
Hpy8I	GTNNAC	5 cut(s)	141, 244, 321, 782, 916
HpyAV	CCTTC	2 cut(s)	163, 736
HpyCH4III	ACNGT	2 cut(s)	311, 627
HpyCH4IV	ACGT	4 cut(s)	363, 400, 635, 778
HpyCH4V	TGCA	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	494, 646
HpySE526I	ACGT	4 cut(s)	363, 400, 635, 778
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	425, 587, 644
HspAI	GCGC	1 cut(s)	524
KpnI	GGTACC	1 cut(s)	493
Ksp22I	TGATCA	2 cut(s)	513, 831
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
LguI	GCTCTTC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	208, 614
LweI	GCATC	2 cut(s)	67, 560
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	4 cut(s)	363, 400, 635, 778
MaeIII	GTNAC	4 cut(s)	412, 498, 658, 702
MalI	GATC	7 cut(s)	79, 95, 106, 480, 515, 789, 833
MboI	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
MboII	GAAGA	4 cut(s)	244, 293, 473, 938
MflI	RGATCY	2 cut(s)	93, 478
MhlI	GDGCHC	2 cut(s)	696, 778
MlsI	TGGCCA	1 cut(s)	801
MluCI	AATT	5 cut(s)	129, 355, 746, 868, 937
MluNI	TGGCCA	1 cut(s)	801
MlyI	GAGTC	3 cut(s)	123, 281, 365
MmeI	TCCRAC	2 cut(s)	700, 870
Mox20I	TGGCCA	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	801
MseI	TTAA	6 cut(s)	126, 149, 243, 354, 671, 940
Msp20I	TGGCCA	1 cut(s)	801
MspI	CCGG	1 cut(s)	88
MspR9I	CCNGG	3 cut(s)	88, 429, 857
MvaI	CCWGG	2 cut(s)	429, 857
NciI	CCSGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
NlaIII	CATG	3 cut(s)	425, 587, 644
NlaIV	GGNNCC	3 cut(s)	204, 491, 589
NmuCI	GTSAC	2 cut(s)	498, 658
PciSI	GCTCTTC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	262, 457, 864
PflMI	CCANNNNNTGG	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	198, 407, 604
PleI	GAGTC	3 cut(s)	122, 281, 365
PpsI	GAGTC	3 cut(s)	122, 281, 365
Psp6I	CCWGG	2 cut(s)	427, 855
PspGI	CCWGG	2 cut(s)	427, 855
PspN4I	GGNNCC	3 cut(s)	204, 491, 589
PspPI	GGNCC	2 cut(s)	425, 565
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	93, 478
RsaI	GTAC	3 cut(s)	191, 446, 491
RsaNI	GTAC	3 cut(s)	190, 445, 490
SalI	GTCGAC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	6 cut(s)	126, 149, 243, 354, 671, 940
SatI	GCNGC	3 cut(s)	197, 406, 603
Sau3AI	GATC	7 cut(s)	77, 93, 104, 478, 513, 787, 831
Sau96I	GGNCC	2 cut(s)	425, 565
SchI	GAGTC	3 cut(s)	123, 281, 365
ScrFI	CCNGG	3 cut(s)	88, 429, 857
SduI	GDGCHC	2 cut(s)	696, 778
SfaNI	GCATC	2 cut(s)	67, 560
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	3 cut(s)	503, 560, 883
SmoI	CTYRAG	3 cut(s)	503, 560, 883
Sse9I	AATT	5 cut(s)	129, 355, 746, 868, 937
SsiI	CCGC	4 cut(s)	91, 134, 405, 699
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	86, 427, 855
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	311, 627
TaiI	ACGT	4 cut(s)	366, 403, 638, 781
TaqI	TCGA	5 cut(s)	76, 140, 156, 391, 686
TasI	AATT	5 cut(s)	129, 355, 746, 868, 937
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	3 cut(s)	262, 457, 864
Tru1I	TTAA	6 cut(s)	126, 149, 243, 354, 671, 940
Tru9I	TTAA	6 cut(s)	126, 149, 243, 354, 671, 940
TscAI	CASTG	4 cut(s)	577, 632, 670, 766
TseFI	GTSAC	2 cut(s)	498, 658
TseI	GCWGC	2 cut(s)	196, 602
Tsp45I	GTSAC	2 cut(s)	498, 658
TspDTI	ATGAA	5 cut(s)	225, 470, 473, 671, 888
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	4 cut(s)	577, 632, 670, 766
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	129, 746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmiI	GTMKAC	3 cut(s)	140, 320, 781
XspI	CTAG	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.