Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000573.1

Orthogroup ID

OG0005677

Physical Location & Seq

Genomic Coordinates Reverse (-)

184387 .. 185858

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000573.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgactttcttggcgacccaatgtgtcgtcgcctcaatcccaacatacccagtttctaatcatcagcccaaacggtgccgcccccagagaatccaatcgaaatcggacagaatcccagttgttaaaacccaacagtcgagctttccaactactcgggaatcgagaagagagtctgagtgtgagtgcttcaatctgtacaaggagctagttccttaccggcaagcttggtcttggcagaagagcattgtcaaggagaaaaaggctctgattgagaggaaggaggactgcccggactcgctgttcgttcttcagcatcctcctgtttatacaatgggcaccggtagctcagaagagttcctcaattttgacctcaaggatgctccatttgatgttcatcggaccgaacgcggcggtgaggttacatatcacggtcctggtcagatagtaatgtaccccattatgaatctccgaaatcacaaaatggatcttcattggtacctcaggtcacttgaggaggtgatcattcgcgctctttcaaagacattttcaatcaaggcatctcgacttgagggcttaactggtgtttggcatggaaacctgaaactggcagccattggtatacgagtgtctcactggatagcttatcacggtttggcactgaacgtaaccacagatttaactccttttcgttggatagtaccgtgtggtttacaaaactatcaggttggaagcattagagggttgttgggggagtttgattcatttgacaatagtagtagaaaacagctaccagatcctgatgatgtccagctacttgatattgcttgtaaatctttgatcaatgagttttcagaagtttttcaggtcaacatttctaattgctggtgtgaaacagatcttaacactcttgaacattttcatttccaatctgttcctagagggagtaggtcatgtcaccaaacagaatttgtgagcaacaacagtaagggcaatggtgtcaacctcagaaaccctgccattagcgttcaaattgtcacgaccgcccttaagcccgtttcttttctagcacaaaagtatagaacacttgtttcgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0010467 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00785 ko01100 map00785 map01100

Pfam Domains

Protein Families

BPL_LplA_LipB

Protein Analysis

365

Amino Acids

41.68

Weight (kDa)

8.74

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47578 AT4G31050
fragaria_vesca	FvH4_2g26090 FvH4_2g26090
malus_domestica	MD06G1010800.v1.1
prunus_persica	Prupe.5G012900_v2.0.a1 Prupe.5G012900_v2.0.a1
pyrus_communis	pycom16g25840
rosa_chinensis	RchiOBHm_Chr5g0074221 RchiOBHm_Chr6g0294461
rosa_laevigata	RLG00000011867 RLG00000036458
rosa_multiflora	Rmu_co8046078.1_g000001 Rmu_sc0000573.1_g000055 Rmu_sc0004706.1_g000002 Rmu_ssc0000248.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007250 Rroxscaffold_7G00173310
rosa_rugosa	Rorug05G0429500 Rorug06G0244800
rosa_samantha	Rh5DG520100 Rh5DG520400 Rh6AG357400 Rh6BG364300 Rh6CG371400 Rh6DG358200
rosa_wichuraiana	Rw5G045220 Rw6G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	495
AccB1I	GGYRCC	3 cut(s)	75, 335, 495
AccI	GTMKAC	1 cut(s)	619
AccII	CGCG	2 cut(s)	408, 528
AciI	CCGC	4 cut(s)	79, 408, 411, 1041
AclWI	GGATC	2 cut(s)	492, 788
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	4 cut(s)	197, 452, 497, 699
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	1 cut(s)	1046
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	5 cut(s)	190, 537, 549, 911, 1028
AjnI	CCWGG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	7 cut(s)	141, 205, 224, 345, 641, 787, 811
AluI	AGCT	7 cut(s)	141, 205, 224, 345, 641, 787, 811
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	2 cut(s)	492, 788
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	965
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	858, 915
Asp718I	GGTACC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	399, 431
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	425, 529, 947
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	399, 431
AxyI	CCTNAGG	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	3 cut(s)	75, 335, 495
BbvI	GCAGC	1 cut(s)	620
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	2 cut(s)	519, 837
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	3 cut(s)	206, 936, 1064
BfrI	CTTAAG	1 cut(s)	1046
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	3 cut(s)	79, 409, 609
BlsI	GCNGC	3 cut(s)	80, 410, 610
Bme1390I	CCNGG	2 cut(s)	290, 435
Bme18I	GGWCC	2 cut(s)	399, 431
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	399, 431
BmiI	GGNNCC	3 cut(s)	77, 337, 497
BmrFI	CCNGG	2 cut(s)	290, 435
BmrI	ACTGGG	2 cut(s)	44, 110
BmsI	GCATC	3 cut(s)	322, 367, 566
BmuI	ACTGGG	2 cut(s)	44, 110
BpuEI	CTTGAG	3 cut(s)	356, 530, 587
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	2 cut(s)	216, 338
Bse1I	ACTGG	5 cut(s)	50, 116, 583, 609, 638
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	997
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	313, 382
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	4 cut(s)	165, 360, 514, 1018
BseNI	ACTGG	5 cut(s)	50, 116, 583, 609, 638
BseRI	GAGGAG	1 cut(s)	527
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	620
Bsh1236I	CGCG	2 cut(s)	408, 528
Bsh1285I	CGRYCG	1 cut(s)	1041
BshNI	GGYRCC	3 cut(s)	75, 335, 495
BshTI	ACCGGT	1 cut(s)	338
BsiEI	CGRYCG	1 cut(s)	1041
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	217, 290, 339
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	633
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	484, 519, 793, 837, 895
BspACI	CCGC	4 cut(s)	79, 408, 411, 1041
BspCNI	CTCAG	4 cut(s)	166, 359, 513, 1017
BspFNI	CGCG	2 cut(s)	408, 528
BspLI	GGNNCC	3 cut(s)	77, 337, 497
BspPI	GGATC	2 cut(s)	492, 788
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	3 cut(s)	75, 335, 495
BspTI	CTTAAG	1 cut(s)	1046
BsrDI	GCAATG	1 cut(s)	997
BsrFI	RCCGGY	2 cut(s)	216, 338
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	5 cut(s)	50, 116, 583, 609, 638
BssAI	RCCGGY	2 cut(s)	216, 338
BssMI	GATC	5 cut(s)	484, 519, 793, 837, 895
BssNAI	GTATAC	1 cut(s)	620
Bst1107I	GTATAC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	6 cut(s)	75, 135, 431, 650, 702, 983
Bst6I	CTCTTC	3 cut(s)	160, 233, 345
BstAFI	CTTAAG	1 cut(s)	1046
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	4 cut(s)	174, 346, 500, 1004
BstF5I	GGATG	2 cut(s)	313, 382
BstFNI	CGCG	2 cut(s)	408, 528
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	5 cut(s)	487, 522, 796, 840, 898
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	5 cut(s)	484, 519, 793, 837, 895
BstMCI	CGRYCG	1 cut(s)	1041
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	288, 433
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	2 cut(s)	408, 528
BstV1I	GCAGC	1 cut(s)	620
BstX2I	RGATCY	3 cut(s)	484, 793, 895
BstYI	RGATCY	3 cut(s)	484, 793, 895
BstZ17I	GTATAC	1 cut(s)	620
Bsu36I	CCTNAGG	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	313, 382
BtsIMutI	CAGTG	2 cut(s)	631, 656
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	1 cut(s)	530
Cfr10I	RCCGGY	2 cut(s)	216, 338
Cfr13I	GGNCC	2 cut(s)	399, 431
CpoI	CGGWCCG	1 cut(s)	399
Csp6I	GTAC	4 cut(s)	196, 451, 496, 698
CspAI	ACCGGT	1 cut(s)	338
CspI	CGGWCCG	1 cut(s)	399
CviAII	CATG	2 cut(s)	590, 951
CviQI	GTAC	4 cut(s)	196, 451, 496, 698
DdeI	CTNAG	4 cut(s)	174, 346, 500, 1004
DpnI	GATC	5 cut(s)	486, 521, 795, 839, 897
DpnII	GATC	5 cut(s)	484, 519, 793, 837, 895
Eam1104I	CTCTTC	3 cut(s)	160, 233, 345
EarI	CTCTTC	3 cut(s)	160, 233, 345
Eco47I	GGWCC	2 cut(s)	399, 431
Eco57I	CTGAAG	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	433
FaeI	CATG	2 cut(s)	593, 954
FaiI	YATR	8 cut(s)	46, 327, 424, 461, 591, 620, 952, 1077
FatI	CATG	2 cut(s)	589, 950
FbaI	TGATCA	2 cut(s)	519, 837
FblI	GTMKAC	1 cut(s)	619
Fnu4HI	GCNGC	3 cut(s)	79, 409, 609
FokI	GGATG	2 cut(s)	300, 389
Fsp4HI	GCNGC	3 cut(s)	79, 409, 609
FspBI	CTAG	3 cut(s)	206, 936, 1064
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	3 cut(s)	79, 409, 609
HapII	CCGG	3 cut(s)	217, 290, 339
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	2 cut(s)	593, 954
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	2 cut(s)	868, 1000
HindII	GTYRAC	2 cut(s)	868, 1000
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	7 cut(s)	90, 111, 158, 170, 293, 463, 758
HpaII	CCGG	3 cut(s)	217, 290, 339
HphI	GGTGA	3 cut(s)	425, 529, 947
Hpy166II	GTNNAC	4 cut(s)	620, 710, 868, 1000
Hpy188I	TCNGA	9 cut(s)	106, 175, 267, 349, 399, 441, 470, 853, 1007
Hpy188III	TCNNGA	6 cut(s)	155, 162, 561, 797, 908, 1036
Hpy8I	GTNNAC	4 cut(s)	620, 710, 868, 1000
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	6 cut(s)	75, 135, 431, 650, 702, 983
HpyCH4IV	ACGT	1 cut(s)	663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	4 cut(s)	174, 346, 500, 1004
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	2 cut(s)	593, 954
HspAI	GCGC	1 cut(s)	528
KpnI	GGTACC	1 cut(s)	499
Ksp22I	TGATCA	2 cut(s)	519, 837
Kzo9I	GATC	5 cut(s)	484, 519, 793, 837, 895
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	202, 385
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	3 cut(s)	322, 367, 566
MaeI	CTAG	3 cut(s)	206, 936, 1064
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	5 cut(s)	418, 504, 664, 953, 1033
MalI	GATC	5 cut(s)	486, 521, 795, 839, 897
MboI	GATC	5 cut(s)	484, 519, 793, 837, 895
MboII	GAAGA	5 cut(s)	177, 250, 299, 362, 479
MflI	RGATCY	3 cut(s)	484, 793, 895
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	4 cut(s)	361, 877, 965, 1029
MlyI	GAGTC	2 cut(s)	179, 287
MmeI	TCCRAC	3 cut(s)	170, 671, 706
MroXI	GAANNNNTTC	2 cut(s)	858, 915
MseI	TTAA	5 cut(s)	123, 575, 677, 900, 1047
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	3 cut(s)	217, 290, 339
MspR9I	CCNGG	2 cut(s)	290, 435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	2 cut(s)	408, 528
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	5 cut(s)	484, 519, 793, 837, 895
NlaIII	CATG	2 cut(s)	593, 954
NlaIV	GGNNCC	3 cut(s)	77, 337, 497
NmuCI	GTSAC	3 cut(s)	504, 953, 1033
PciSI	GCTCTTC	1 cut(s)	233
PdmI	GAANNNNTTC	2 cut(s)	858, 915
PfeI	GAWTC	5 cut(s)	90, 111, 158, 463, 758
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	3 cut(s)	80, 410, 610
PleI	GAGTC	2 cut(s)	178, 287
PpsI	GAGTC	2 cut(s)	178, 287
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	3 cut(s)	77, 337, 497
PspPI	GGNCC	2 cut(s)	399, 431
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	3 cut(s)	484, 793, 895
RsaI	GTAC	4 cut(s)	197, 452, 497, 699
RsaNI	GTAC	4 cut(s)	196, 451, 496, 698
Rsr2I	CGGWCCG	1 cut(s)	399
RsrII	CGGWCCG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	5 cut(s)	123, 575, 677, 900, 1047
SatI	GCNGC	3 cut(s)	79, 409, 609
Sau3AI	GATC	5 cut(s)	484, 519, 793, 837, 895
Sau96I	GGNCC	2 cut(s)	399, 431
SchI	GAGTC	2 cut(s)	179, 287
ScrFI	CCNGG	2 cut(s)	290, 435
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	3 cut(s)	322, 367, 566
SinI	GGWCC	2 cut(s)	399, 431
SmlI	CTYRAG	4 cut(s)	371, 509, 566, 1046
SmoI	CTYRAG	4 cut(s)	371, 509, 566, 1046
Sse9I	AATT	4 cut(s)	361, 877, 965, 1029
SsiI	CCGC	4 cut(s)	79, 408, 411, 1041
SspMI	CTAG	3 cut(s)	206, 936, 1064
StyD4I	CCNGG	2 cut(s)	288, 433
TaaI	ACNGT	6 cut(s)	75, 135, 431, 650, 702, 983
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	98, 137, 161, 562
TaqII	GACCGA	1 cut(s)	416
TasI	AATT	4 cut(s)	361, 877, 965, 1029
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	81, 411
TfiI	GAWTC	5 cut(s)	90, 111, 158, 463, 758
Tru1I	TTAA	5 cut(s)	123, 575, 677, 900, 1047
Tru9I	TTAA	5 cut(s)	123, 575, 677, 900, 1047
TscAI	CASTG	2 cut(s)	638, 663
TseFI	GTSAC	3 cut(s)	504, 953, 1033
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	3 cut(s)	504, 953, 1033
TspDTI	ATGAA	5 cut(s)	383, 476, 479, 750, 908
TspRI	CASTG	2 cut(s)	638, 663
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	2 cut(s)	399, 431
XapI	RAATTY	1 cut(s)	965
XmiI	GTMKAC	1 cut(s)	619
XmnI	GAANNNNTTC	2 cut(s)	858, 915
XspI	CTAG	3 cut(s)	206, 936, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.