Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Reverse (-)

19859267 .. 19860976

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGATTTACTCTGTGTCGCACAAATGCTACTTTGCTTTTGGAGCTCTTGTTTCAGAAGATCTTTCACATAAGATCAAAGAGTTGCCTAAGGTTAAGTGGGTTCTTCCTGATTCCTACTTGGATGGGAAGAATAAAGACTATGGAGGAGAACCTTTCATTGATGGAAAGGCTGTTCCTTATGACCCAAAGTATCATGAAGAATGGATAAGAAACAATGCTAATGCAACTAATGAAAACAGACGCCCTCGCAGGCCTCGCAACTCGGATGGAGGCAGGAACGATAGGGGAAACCAAGACACGGGTTACAGACGTCCACCACCAAACCAAGGTATGGGAGGTGCTCCACCTCCACCGCCTCACATAGGCAACAACCCAAACATGCCTCCTCATATACAACCACCTAACATGAACCAGAACTACAGAGGTCCTCCTCCACCACCAAACATGAACCAGAACTATCAGGGACCACCAGCACCAAACATGAACCAGAACTATCAGGGACCTCCACCATCAAACATGGGTCAGAACTACCAGGGACCACCACCGCCAAACATGAACCAGAGCTATCAGGGACCTCCACCGCCAAACATGAACCAGAGCTATCAGGGACCTCCACCGTCGAACATGGGCCAGAACTACAGGGGACCTTCACTGCCGCCACCAAACATGAGTCAGAATTACGAGGGACCACCACCACCGAACATGAATGGAGGATGGTCTGGAAACTACCAGCAGAACGGTGGATACCAACAACAAGGTCAGGGTGGTGGAATGCAGCAACAGCCTTACCCACCCAATAGGAACCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.11

Weight (kDa)

9.37

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 53	5.8e-18	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	4 cut(s)	356, 548, 584, 659
AcyI	GRCGYC	2 cut(s)	244, 313
AfiI	CCNNNNNNNGG	4 cut(s)	301, 329, 334, 365
AjnI	CCWGG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	3 cut(s)	47, 567, 603
AluI	AGCT	3 cut(s)	47, 567, 603
Alw21I	GWGCWC	2 cut(s)	49, 346
AoxI	GGCC	2 cut(s)	254, 631
ApeKI	GCWGC	1 cut(s)	778
AspS9I	GGNCC	9 cut(s)	428, 467, 503, 539, 575, 611, 631, 647, 689
AvaII	GGWCC	8 cut(s)	428, 467, 503, 539, 575, 611, 647, 689
AxyI	CCTNAGG	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	2 cut(s)	49, 346
BbvI	GCAGC	1 cut(s)	790
BccI	CCATC	5 cut(s)	119, 158, 263, 520, 711
BciT130I	CCWGG	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	740
BfmI	CTRYAG	2 cut(s)	421, 640
BfuI	GTATCC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	659, 779
BlsI	GCNGC	2 cut(s)	660, 780
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	8 cut(s)	428, 467, 503, 539, 575, 611, 647, 689
BmgT120I	GGNCC	9 cut(s)	428, 467, 503, 539, 575, 611, 631, 647, 689
BmiI	GGNNCC	8 cut(s)	468, 504, 540, 576, 612, 648, 690, 806
BmrFI	CCNGG	1 cut(s)	536
BsaHI	GRCGYC	2 cut(s)	244, 313
BsaJI	CCNNGG	2 cut(s)	328, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 329, 334, 365
Bse21I	CCTNAGG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	328, 535
BseGI	GGATG	3 cut(s)	130, 274, 722
BseLI	CCNNNNNNNGG	4 cut(s)	301, 329, 334, 365
BseRI	GAGGAG	3 cut(s)	162, 378, 423
BseXI	GCAGC	1 cut(s)	790
BshFI	GGCC	2 cut(s)	256, 633
BsiHKAI	GWGCWC	2 cut(s)	49, 346
BslFI	GGGAC	7 cut(s)	480, 516, 552, 588, 624, 660, 702
BslI	CCNNNNNNNGG	4 cut(s)	301, 329, 334, 365
BsmFI	GGGAC	7 cut(s)	480, 516, 552, 588, 624, 660, 702
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	256, 633
Bsp1286I	GDGCHC	2 cut(s)	49, 346
Bsp143I	GATC	2 cut(s)	61, 75
BspACI	CCGC	4 cut(s)	356, 548, 584, 659
BspANI	GGCC	2 cut(s)	256, 633
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	8 cut(s)	468, 504, 540, 576, 612, 648, 690, 806
BssECI	CCNNGG	2 cut(s)	328, 535
BssMI	GATC	2 cut(s)	61, 75
BssNI	GRCGYC	2 cut(s)	244, 313
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	2 cut(s)	621, 743
BstACI	GRCGYC	2 cut(s)	244, 313
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	90
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	130, 274, 722
BstKTI	GATC	2 cut(s)	64, 78
BstMBI	GATC	2 cut(s)	61, 75
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 258, 784
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	2 cut(s)	421, 640
BstV1I	GCAGC	1 cut(s)	790
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	2 cut(s)	256, 633
BtsCI	GGATG	3 cut(s)	130, 274, 722
BtsI	GCAGTG	1 cut(s)	653
BtsIMutI	CAGTG	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	254
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	9 cut(s)	428, 467, 503, 539, 575, 611, 631, 647, 689
CseI	GACGC	1 cut(s)	252
CviJI	RGCY	7 cut(s)	47, 173, 256, 567, 603, 633, 787
CviKI_1	RGCY	7 cut(s)	47, 173, 256, 567, 603, 633, 787
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	63, 77
DpnII	GATC	2 cut(s)	61, 75
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	8 cut(s)	428, 467, 503, 539, 575, 611, 647, 689
Eco53kI	GAGCTC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	47
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoO109I	RGGNCCY	5 cut(s)	428, 503, 575, 611, 647
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	328
FaqI	GGGAC	7 cut(s)	480, 516, 552, 588, 624, 660, 702
Fnu4HI	GCNGC	2 cut(s)	659, 779
FokI	GGATG	3 cut(s)	137, 281, 729
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	659, 779
GluI	GCNGC	2 cut(s)	659, 779
HaeIII	GGCC	2 cut(s)	256, 633
HgaI	GACGC	1 cut(s)	252
Hin1I	GRCGYC	2 cut(s)	244, 313
HinfI	GANTC	2 cut(s)	113, 673
Hpy166II	GTNNAC	1 cut(s)	317
Hpy188I	TCNGA	4 cut(s)	58, 268, 528, 678
Hpy188III	TCNNGA	3 cut(s)	110, 197, 723
Hpy8I	GTNNAC	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	1 cut(s)	660
HpyCH4III	ACNGT	2 cut(s)	621, 743
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	227, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 258, 784
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	313
Hsp92I	GRCGYC	2 cut(s)	244, 313
Kzo9I	GATC	2 cut(s)	61, 75
LmnI	GCTCC	2 cut(s)	44, 349
Lsp1109I	GCAGC	1 cut(s)	790
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	63, 77
MboI	GATC	2 cut(s)	61, 75
MboII	GAAGA	5 cut(s)	16, 71, 98, 142, 212
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	49, 346
MluCI	AATT	1 cut(s)	679
MlyI	GAGTC	1 cut(s)	682
MseI	TTAA	2 cut(s)	96, 814
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	44, 258, 784
NdeII	GATC	2 cut(s)	61, 75
NlaIV	GGNNCC	8 cut(s)	468, 504, 540, 576, 612, 648, 690, 806
NspI	RCATGY	1 cut(s)	385
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	660, 780
PleI	GAGTC	1 cut(s)	681
PpsI	GAGTC	1 cut(s)	681
PpuMI	RGGWCCY	5 cut(s)	428, 503, 575, 611, 647
Psp124BI	GAGCTC	1 cut(s)	49
Psp5II	RGGWCCY	5 cut(s)	428, 503, 575, 611, 647
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	8 cut(s)	468, 504, 540, 576, 612, 648, 690, 806
PspPI	GGNCC	9 cut(s)	428, 467, 503, 539, 575, 611, 631, 647, 689
PspPPI	RGGWCCY	5 cut(s)	428, 503, 575, 611, 647
PsrI	GAACNNNNNNTAC	4 cut(s)	404, 436, 731, 763
PsuI	RGATCY	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	96, 814
SatI	GCNGC	2 cut(s)	659, 779
Sau3AI	GATC	2 cut(s)	61, 75
Sau96I	GGNCC	9 cut(s)	428, 467, 503, 539, 575, 611, 631, 647, 689
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	49, 346
SfcI	CTRYAG	2 cut(s)	421, 640
SinI	GGWCC	8 cut(s)	428, 467, 503, 539, 575, 611, 647, 689
Sse9I	AATT	1 cut(s)	679
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	4 cut(s)	356, 548, 584, 659
SstI	GAGCTC	1 cut(s)	49
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	621, 743
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	623
TasI	AATT	1 cut(s)	679
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	96, 814
Tru9I	TTAA	2 cut(s)	96, 814
TscAI	CASTG	1 cut(s)	660
TseI	GCWGC	1 cut(s)	778
TspRI	CASTG	1 cut(s)	660
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	8 cut(s)	428, 467, 503, 539, 575, 611, 647, 689
XagI	CCTNNNNNAGG	1 cut(s)	363
XceI	RCATGY	1 cut(s)	385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	740
ZraI	GACGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.