Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

26110 .. 26511

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggccggacctcccagcaacatgagtccacccaacaatatgcctcccccacctgtggacaggcctccaatgcctcccaacaacacgagtgcacgaaactacaacaatatgccacaggcaagcaacaactggggcggaggacagccgaactacaatcagatgccgcctccaaacaactacaatcaggggtcgcctaacaactataatcagatgcctccaaacaacaatatgcgagggccaccacaaccccaaaaccacatgggaggaccgccaccgcacatgggaggacagccaccacacatgggaggagggcaacctgtgccatcatggtctgatcctgcacaataccaaaatacctacacaccagagagagataatggtggtggtcaaaaccgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.45

Weight (kDa)

8.12

Isoelectric Point (pI)

76.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	135, 164, 269, 275
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	55, 281, 302
Alw21I	GWGCWC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	3 cut(s)	3, 62, 236
ApaLI	GTGCAC	1 cut(s)	90
AspS9I	GGNCC	3 cut(s)	8, 236, 266
AvaII	GGWCC	2 cut(s)	8, 266
BaeGI	GKGCMC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	94
BccI	CCATC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	2 cut(s)	8, 266
BmgT120I	GGNCC	3 cut(s)	8, 236, 266
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	150, 201
BmuI	ACTGGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 281, 302
Bse1I	ACTGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	3 cut(s)	55, 281, 302
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	94
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	3 cut(s)	5, 64, 238
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	3 cut(s)	55, 281, 302
BsnI	GGCC	3 cut(s)	5, 64, 238
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	4 cut(s)	135, 164, 269, 275
BspANI	GGCC	3 cut(s)	5, 64, 238
BspPI	GGATC	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 319
BstSLI	GKGCMC	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	5, 64, 238
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	8, 236, 266
CviAII	CATG	5 cut(s)	22, 259, 280, 301, 327
CviJI	RGCY	5 cut(s)	5, 64, 145, 238, 292
CviKI_1	RGCY	5 cut(s)	5, 64, 145, 238, 292
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	8, 266
FaeI	CATG	5 cut(s)	25, 262, 283, 304, 330
FaiI	YATR	9 cut(s)	23, 41, 110, 204, 230, 260, 281, 302, 328
FatI	CATG	5 cut(s)	21, 258, 279, 300, 326
Fnu4HI	GCNGC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	164
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	5, 64, 238
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	5 cut(s)	25, 262, 283, 304, 330
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	3 cut(s)	29, 58, 92
Hpy188I	TCNGA	3 cut(s)	159, 210, 334
Hpy8I	GTNNAC	3 cut(s)	29, 58, 92
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4V	TGCA	2 cut(s)	92, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 319
Hsp92II	CATG	5 cut(s)	25, 262, 283, 304, 330
Kzo9I	GATC	1 cut(s)	334
LweI	GCATC	2 cut(s)	150, 201
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	34
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	70, 319
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	5 cut(s)	25, 262, 283, 304, 330
PceI	AGGCCT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	8, 236, 266
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	334
Sau96I	GGNCC	3 cut(s)	8, 236, 266
SchI	GAGTC	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	4 cut(s)	13, 55, 319, 359
SfaNI	GCATC	2 cut(s)	150, 201
SinI	GGWCC	2 cut(s)	8, 266
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	4 cut(s)	135, 164, 269, 275
StuI	AGGCCT	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	8, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.