Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8400365.1

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 883

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8400365.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

gacccgaaccccaactggtccaaccggcctcccaaggagactatcctcctcgatggctgcgacttcgagcactggctcgtcgtcatggagccgccgccggaggggaccactagggatgacaccatcaaggagtacatcaaaaccctagccatggtcgtcggaagtgaggaagaagcgaggatgaagatctactctgtttcaactaggtgttattttgcatttggtgcactcgtgtctgaagagctttcatacaaaatcaaggaattgccaaaggtccgctgggtgcttcctgattcgtacctggatgttaagaacaaagattatggaggtaagaacttgcttgttacttcaactctcatttgcaaacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

14.11

Weight (kDa)

5.41

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 95, 277
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	2 cut(s)	134, 299
AfiI	CCNNNNNNNGG	2 cut(s)	101, 151
AgsI	TTSAA	2 cut(s)	201, 351
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw21I	GWGCWC	2 cut(s)	72, 229
Alw26I	GTCTC	1 cut(s)	32
Alw44I	GTGCAC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	18, 105, 274
AvaII	GGWCC	3 cut(s)	18, 105, 274
BaeGI	GKGCMC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	72, 229
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	47, 131
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	3 cut(s)	111, 146, 204
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	58, 92, 95
BlsI	GCNGC	3 cut(s)	59, 93, 96
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	3 cut(s)	18, 105, 274
BmgT120I	GGNCC	3 cut(s)	18, 105, 274
BmiI	GGNNCC	2 cut(s)	90, 106
BmrFI	CCNGG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	33, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 151
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	20, 77
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	33, 150
BseGI	GGATG	3 cut(s)	121, 186, 310
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	101, 151
BseNI	ACTGG	2 cut(s)	20, 77
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	72, 229
BsiSI	CCGG	2 cut(s)	25, 98
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	101, 151
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	72, 229
Bsp143I	GATC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	3 cut(s)	92, 95, 277
BspANI	GGCC	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	90, 106
BspQI	GCTCTTC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	2 cut(s)	20, 77
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	2 cut(s)	33, 150
BssMI	GATC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	2 cut(s)	33, 150
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	121, 186, 310
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	121, 186, 310
BtsIMutI	CAGTG	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	18, 105, 274
Csp6I	GTAC	2 cut(s)	133, 298
CviAII	CATG	2 cut(s)	85, 151
CviJI	RGCY	6 cut(s)	28, 57, 76, 91, 149, 244
CviKI_1	RGCY	6 cut(s)	28, 57, 76, 91, 149, 244
CviQI	GTAC	2 cut(s)	133, 298
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	33, 150
Eco47I	GGWCC	3 cut(s)	18, 105, 274
Eco57I	CTGAAG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	2 cut(s)	33, 150
ErhI	CCWWGG	2 cut(s)	33, 150
FaeI	CATG	2 cut(s)	88, 154
FaiI	YATR	4 cut(s)	86, 152, 250, 324
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	84, 150
Fnu4HI	GCNGC	3 cut(s)	58, 92, 95
FokI	GGATG	3 cut(s)	128, 193, 317
Fsp4HI	GCNGC	3 cut(s)	58, 92, 95
FspBI	CTAG	3 cut(s)	111, 146, 204
GluI	GCNGC	3 cut(s)	58, 92, 95
GsaI	CCCAGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	2 cut(s)	25, 98
Hin1II	CATG	2 cut(s)	88, 154
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	25, 98
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	161, 238
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	2 cut(s)	83, 161
HpyCH4V	TGCA	3 cut(s)	218, 227, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	88, 154
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	7 cut(s)	38, 58, 111, 265, 287, 303, 314
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	3 cut(s)	111, 146, 204
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	3 cut(s)	182, 196, 251
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	72, 229
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	45, 139
MnlI	CCTC	7 cut(s)	39, 56, 59, 94, 160, 171, 320
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	2 cut(s)	25, 98
MspR9I	CCNGG	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	2 cut(s)	88, 154
NlaIV	GGNNCC	2 cut(s)	90, 106
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	59, 93, 96
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	90, 106
PspPI	GGNCC	3 cut(s)	18, 105, 274
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	134, 299
RsaNI	GTAC	2 cut(s)	133, 298
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	58, 92, 95
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	3 cut(s)	18, 105, 274
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	72, 229
SetI	ASST	5 cut(s)	209, 246, 276, 303, 331
SinI	GGWCC	3 cut(s)	18, 105, 274
Sse9I	AATT	1 cut(s)	263
SsiI	CCGC	3 cut(s)	92, 95, 277
SspMI	CTAG	3 cut(s)	111, 146, 204
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	33, 150
TaqI	TCGA	2 cut(s)	51, 66
TasI	AATT	1 cut(s)	263
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	2 cut(s)	94, 97
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	197, 237
TspRI	CASTG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	3 cut(s)	18, 105, 274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	276
XspI	CTAG	3 cut(s)	111, 146, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.