Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

25014940 .. 25017832

Gene Structure 2893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31069

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCGACCCATTTCCTCTCTCGCTCCTTCCCCAAAACCCTAGCCCTCTCCTCCTTCCTCTCCCGCTCTCTTTCCACAGCCACCACCACCGCCTCCACCCTCTCCTCCGCTCACTCCCGCTCCTCCCTCTCCCTCATCAACCGCCTCCGCCCCCTCGCCGGCGCCGGCGCCATCGCCTTCCCTGGAAAGCTCTCTCCCGCCGCCATCCGTTGCTTCTCGGCCAACGCCACCACCTCCTCGCTCCGCGACCCCAACCCCAACTGGTCCAACCGGCCTCCCAAGGAGACTATCCTCCTCGATGGCTGCGACTTCGAGCACTGGCTCGTCGTCATGGAGCCGCCGCCGGAGGGGACCACTAGGGATGACACCATCAAGGAGTACATCAAAACCCTAGCCATGGTCGTCGGAAGTGAGGAAGAAGCGAGGATGAAGATCTACTCTGTTTCAACTAGGTGTTATTTTGCATTTGGTGCACTCGTGTCTGAAGAGCTTTCATACAAAATCAAGGAATTGCCAAAGGTCCGCTGGGTGCTTCCTGATTCGTACCTGGATGTTAAGAACAAAGATTACGGAGGCGAACCTTTTATTAATGGGGAAGCAGTACCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAACAGTCGGGCAAACGAGAGAAACAGACGCAATGATAGACCTAGGAACTTTGACAATTCAAGGAACTTCGACAGGAGAAGGGAAAACATGCAGCGCAGAGATGGCCCGAATAGGGGTGCCCCTCCTTTTCCTAATCAACCAGGCCAGCATGGGCCTGGCATGGCCGGACCTCCCAGCAACATGAGTCCACCCAACAATATGCCTCCCCCACCTGTGGACAGGCCTCCAATGCCTCCCAACAACACGAGTGCACCAAACTACAACAATATGCCACAGGCAAGCAACAACTGGGGTGGAGGACAGCCGAACTACAATCAGATGCCTCCAAACAACTACAATCAAGGGTCGCCTAACAACTATAATCAGATGCCTCCAAACAACAATATGCGAGGGCCACCACCACCCCAAAACCACATGGGAGGACCGCCACCACACATGGGAGGACAGCCACCACACATGGGAGGAGGGCAACCTGCGCCATCATGGTCTGATCCTGCACAATACCAAAATACCTACACACCAGAGAGAGATAATGGTGGTGGTCAAAACCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

44.31

Weight (kDa)

9.34

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	104 - 195	1e-37	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1123
AccB1I	GGYRCC	3 cut(s)	161, 167, 758
AccBSI	CCGCTC	3 cut(s)	66, 110, 120
AccII	CGCG	1 cut(s)	246
AclWI	GGATC	2 cut(s)	605, 1127
AcoI	YGGCCR	2 cut(s)	219, 804
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	2 cut(s)	162, 168
AfaI	GTAC	4 cut(s)	380, 545, 603, 620
AfiI	CCNNNNNNNGG	8 cut(s)	158, 347, 397, 754, 755, 856, 1079, 1100
AgsI	TTSAA	2 cut(s)	447, 702
AjnI	CCWGG	4 cut(s)	181, 546, 781, 796
AluBI	AGCT	2 cut(s)	190, 490
AluI	AGCT	2 cut(s)	190, 490
Alw21I	GWGCWC	3 cut(s)	318, 475, 895
Alw26I	GTCTC	1 cut(s)	278
Alw44I	GTGCAC	2 cut(s)	471, 891
AlwI	GGATC	2 cut(s)	605, 1127
AoxI	GGCC	8 cut(s)	219, 272, 745, 784, 794, 804, 863, 1034
ApaLI	GTGCAC	2 cut(s)	471, 891
ApeKI	GCWGC	2 cut(s)	303, 733
AseI	ATTAAT	1 cut(s)	588
AspA2I	CCTAGG	1 cut(s)	683
AspLEI	GCGC	4 cut(s)	164, 170, 738, 1120
AspS9I	GGNCC	8 cut(s)	264, 351, 520, 746, 794, 809, 1034, 1064
AvaII	GGWCC	5 cut(s)	264, 351, 520, 809, 1064
AvrII	CCTAGG	1 cut(s)	683
BaeGI	GKGCMC	3 cut(s)	475, 763, 895
BanI	GGYRCC	3 cut(s)	161, 167, 758
BauI	CACGAG	2 cut(s)	476, 886
Bbv12I	GWGCWC	3 cut(s)	318, 475, 895
BbvI	GCAGC	2 cut(s)	290, 745
BccI	CCATC	6 cut(s)	179, 212, 293, 377, 737, 1129
BciT130I	CCWGG	4 cut(s)	183, 548, 783, 798
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	5 cut(s)	41, 357, 392, 450, 684
BfoI	RGCGCY	2 cut(s)	165, 171
BfuAI	ACCTGC	1 cut(s)	1123
BglII	AGATCT	1 cut(s)	432
BisI	GCNGC	5 cut(s)	201, 304, 338, 341, 734
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	5 cut(s)	202, 305, 339, 342, 735
Bme1390I	CCNGG	4 cut(s)	183, 548, 783, 798
Bme18I	GGWCC	5 cut(s)	264, 351, 520, 809, 1064
BmgT120I	GGNCC	8 cut(s)	264, 351, 520, 746, 794, 809, 1034, 1064
BmiI	GGNNCC	5 cut(s)	163, 169, 336, 352, 760
BmrFI	CCNGG	4 cut(s)	183, 548, 783, 798
BmrI	ACTGGG	1 cut(s)	940
BmsI	GCATC	2 cut(s)	951, 999
BmuI	ACTGGG	1 cut(s)	940
BsaBI	GATNNNNATC	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	162, 168
BsaJI	CCNNGG	4 cut(s)	181, 279, 396, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	8 cut(s)	158, 347, 397, 754, 755, 856, 1079, 1100
Bse118I	RCCGGY	3 cut(s)	158, 164, 270
Bse1I	ACTGG	3 cut(s)	266, 323, 935
Bse3DI	GCAATG	1 cut(s)	679
Bse8I	GATNNNNATC	1 cut(s)	431
BseBI	CCWGG	4 cut(s)	183, 548, 783, 798
BseDI	CCNNGG	4 cut(s)	181, 279, 396, 683
BseGI	GGATG	4 cut(s)	204, 367, 432, 556
BseJI	GATNNNNATC	1 cut(s)	431
BseLI	CCNNNNNNNGG	8 cut(s)	158, 347, 397, 754, 755, 856, 1079, 1100
BseMI	GCAATG	1 cut(s)	679
BseNI	ACTGG	3 cut(s)	266, 323, 935
BseRI	GAGGAG	6 cut(s)	40, 94, 112, 226, 284, 1119
BseSI	GKGCMC	3 cut(s)	475, 763, 895
BseXI	GCAGC	2 cut(s)	290, 745
BseYI	CCCAGC	2 cut(s)	525, 815
BsgI	GTGCAG	1 cut(s)	1122
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	8 cut(s)	221, 274, 747, 786, 796, 806, 865, 1036
BshNI	GGYRCC	3 cut(s)	161, 167, 758
BsiHKAI	GWGCWC	3 cut(s)	318, 475, 895
BsiSI	CCGG	5 cut(s)	159, 165, 271, 344, 807
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	8 cut(s)	158, 347, 397, 754, 755, 856, 1079, 1100
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	8 cut(s)	221, 274, 747, 786, 796, 806, 865, 1036
Bsp1286I	GDGCHC	4 cut(s)	318, 475, 763, 895
Bsp143I	GATC	3 cut(s)	432, 610, 1132
Bsp19I	CCATGG	1 cut(s)	396
BspANI	GGCC	8 cut(s)	221, 274, 747, 786, 796, 806, 865, 1036
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	5 cut(s)	163, 169, 336, 352, 760
BspMI	ACCTGC	1 cut(s)	1123
BspPI	GGATC	2 cut(s)	605, 1127
BspQI	GCTCTTC	1 cut(s)	480
BspT107I	GGYRCC	3 cut(s)	161, 167, 758
BsrBI	CCGCTC	3 cut(s)	66, 110, 120
BsrDI	GCAATG	1 cut(s)	679
BsrFI	RCCGGY	3 cut(s)	158, 164, 270
BsrI	ACTGG	3 cut(s)	266, 323, 935
BssAI	RCCGGY	3 cut(s)	158, 164, 270
BssECI	CCNNGG	4 cut(s)	181, 279, 396, 683
BssMI	GATC	3 cut(s)	432, 610, 1132
BssNI	GRCGYC	2 cut(s)	162, 168
BssSI	CACGAG	2 cut(s)	476, 886
BssT1I	CCWWGG	3 cut(s)	279, 396, 683
Bst2BI	CACGAG	2 cut(s)	476, 886
Bst2UI	CCWGG	4 cut(s)	183, 548, 783, 798
Bst4CI	ACNGT	2 cut(s)	647, 1193
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	2 cut(s)	162, 168
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	4 cut(s)	160, 166, 788, 922
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	4 cut(s)	204, 367, 432, 556
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	2 cut(s)	165, 171
BstHHI	GCGC	4 cut(s)	164, 170, 738, 1120
BstKTI	GATC	3 cut(s)	435, 613, 1135
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	432, 610, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 744, 871, 1117
BstNI	CCWGG	4 cut(s)	183, 548, 783, 798
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	4 cut(s)	181, 546, 781, 796
BstSLI	GKGCMC	3 cut(s)	475, 763, 895
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	290, 745
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	8 cut(s)	221, 274, 747, 786, 796, 806, 865, 1036
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	204, 367, 432, 556
BtsIMutI	CAGTG	1 cut(s)	316
BveI	ACCTGC	1 cut(s)	1123
Cac8I	GCNNGC	4 cut(s)	160, 166, 788, 922
CfoI	GCGC	4 cut(s)	164, 170, 738, 1120
Cfr10I	RCCGGY	3 cut(s)	158, 164, 270
Cfr13I	GGNCC	8 cut(s)	264, 351, 520, 746, 794, 809, 1034, 1064
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	4 cut(s)	379, 544, 602, 619
CspCI	CAANNNNNGTGG	2 cut(s)	916, 951
CviQI	GTAC	4 cut(s)	379, 544, 602, 619
DinI	GGCGCC	2 cut(s)	163, 169
DpnI	GATC	3 cut(s)	434, 612, 1134
DpnII	GATC	3 cut(s)	432, 610, 1132
EaeI	YGGCCR	2 cut(s)	219, 804
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	3 cut(s)	279, 396, 683
Eco147I	AGGCCT	1 cut(s)	865
Eco47I	GGWCC	5 cut(s)	264, 351, 520, 809, 1064
Eco57I	CTGAAG	1 cut(s)	504
EcoRII	CCWGG	4 cut(s)	181, 546, 781, 796
EcoT14I	CCWWGG	3 cut(s)	279, 396, 683
EgeI	GGCGCC	2 cut(s)	163, 169
EheI	GGCGCC	2 cut(s)	163, 169
ErhI	CCWWGG	3 cut(s)	279, 396, 683
FaqI	GGGAC	1 cut(s)	364
FauI	CCCGC	3 cut(s)	71, 125, 205
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	5 cut(s)	201, 304, 338, 341, 734
FokI	GGATG	4 cut(s)	191, 374, 439, 563
Fsp4HI	GCNGC	5 cut(s)	201, 304, 338, 341, 734
FspBI	CTAG	5 cut(s)	41, 357, 392, 450, 684
GlaI	GCGC	4 cut(s)	163, 169, 737, 1119
GluI	GCNGC	5 cut(s)	201, 304, 338, 341, 734
GsaI	CCCAGC	2 cut(s)	529, 819
HaeII	RGCGCY	2 cut(s)	165, 171
HaeIII	GGCC	8 cut(s)	221, 274, 747, 786, 796, 806, 865, 1036
HapII	CCGG	5 cut(s)	159, 165, 271, 344, 807
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	4 cut(s)	164, 170, 738, 1120
Hin1I	GRCGYC	2 cut(s)	162, 168
Hin6I	GCGC	4 cut(s)	162, 168, 736, 1118
HinP1I	GCGC	4 cut(s)	162, 168, 736, 1118
HinfI	GANTC	2 cut(s)	539, 826
HpaII	CCGG	5 cut(s)	159, 165, 271, 344, 807
Hpy166II	GTNNAC	4 cut(s)	473, 830, 859, 893
Hpy188I	TCNGA	5 cut(s)	407, 484, 960, 1008, 1132
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	4 cut(s)	473, 830, 859, 893
Hpy99I	CGWCG	2 cut(s)	329, 407
HpyAV	CCTTC	4 cut(s)	37, 64, 187, 714
HpyCH4III	ACNGT	2 cut(s)	647, 1193
HpyCH4V	TGCA	5 cut(s)	464, 473, 733, 893, 1139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 744, 871, 1117
Hsp92I	GRCGYC	2 cut(s)	162, 168
HspAI	GCGC	4 cut(s)	162, 168, 736, 1118
KasI	GGCGCC	2 cut(s)	161, 167
KroI	GCCGGC	2 cut(s)	158, 164
KroNI	GCCGGC	2 cut(s)	160, 166
Kzo9I	GATC	3 cut(s)	432, 610, 1132
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	4 cut(s)	29, 125, 246, 334
Lsp1109I	GCAGC	2 cut(s)	290, 745
LweI	GCATC	2 cut(s)	951, 999
MaeI	CTAG	5 cut(s)	41, 357, 392, 450, 684
MalI	GATC	3 cut(s)	434, 612, 1134
MbiI	CCGCTC	3 cut(s)	66, 110, 120
MboI	GATC	3 cut(s)	432, 610, 1132
MboII	GAAGA	3 cut(s)	428, 442, 497
MflI	RGATCY	1 cut(s)	432
MhlI	GDGCHC	4 cut(s)	318, 475, 763, 895
MluCI	AATT	2 cut(s)	509, 697
Mly113I	GGCGCC	2 cut(s)	162, 168
MlyI	GAGTC	1 cut(s)	835
MmeI	TCCRAC	2 cut(s)	291, 385
MreI	CGCCGGCG	2 cut(s)	158, 164
MroNI	GCCGGC	2 cut(s)	158, 164
MseI	TTAA	2 cut(s)	555, 588
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	5 cut(s)	159, 165, 271, 344, 807
MspR9I	CCNGG	4 cut(s)	183, 548, 783, 798
MvaI	CCWGG	4 cut(s)	183, 548, 783, 798
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	4 cut(s)	470, 744, 871, 1117
NaeI	GCCGGC	2 cut(s)	160, 166
NarI	GGCGCC	2 cut(s)	162, 168
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	432, 610, 1132
NgoMIV	GCCGGC	2 cut(s)	158, 164
NlaIV	GGNNCC	5 cut(s)	163, 169, 336, 352, 760
NmeAIII	GCCGAG	1 cut(s)	197
NspI	RCATGY	1 cut(s)	733
PceI	AGGCCT	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	2 cut(s)	160, 166
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	5 cut(s)	202, 305, 339, 342, 735
PleI	GAGTC	1 cut(s)	834
PluTI	GGCGCC	2 cut(s)	165, 171
PpsI	GAGTC	1 cut(s)	834
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	4 cut(s)	181, 546, 781, 796
PspFI	CCCAGC	2 cut(s)	525, 815
PspGI	CCWGG	4 cut(s)	181, 546, 781, 796
PspN4I	GGNNCC	5 cut(s)	163, 169, 336, 352, 760
PspPI	GGNCC	8 cut(s)	264, 351, 520, 746, 794, 809, 1034, 1064
PsrI	GAACNNNNNNTAC	2 cut(s)	551, 583
PsuI	RGATCY	1 cut(s)	432
RsaI	GTAC	4 cut(s)	380, 545, 603, 620
RsaNI	GTAC	4 cut(s)	379, 544, 602, 619
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	555, 588
SatI	GCNGC	5 cut(s)	201, 304, 338, 341, 734
Sau3AI	GATC	3 cut(s)	432, 610, 1132
Sau96I	GGNCC	8 cut(s)	264, 351, 520, 746, 794, 809, 1034, 1064
SchI	GAGTC	1 cut(s)	835
ScrFI	CCNGG	4 cut(s)	183, 548, 783, 798
SduI	GDGCHC	4 cut(s)	318, 475, 763, 895
SfaNI	GCATC	2 cut(s)	951, 999
SfoI	GGCGCC	2 cut(s)	163, 169
SgrAI	CRCCGGYG	2 cut(s)	158, 164
SinI	GGWCC	5 cut(s)	264, 351, 520, 809, 1064
Sse9I	AATT	2 cut(s)	509, 697
SseBI	AGGCCT	1 cut(s)	865
SspDI	GGCGCC	2 cut(s)	161, 167
SspMI	CTAG	5 cut(s)	41, 357, 392, 450, 684
StuI	AGGCCT	1 cut(s)	865
StyD4I	CCNGG	4 cut(s)	181, 546, 781, 796
StyI	CCWWGG	3 cut(s)	279, 396, 683
TaaI	ACNGT	2 cut(s)	647, 1193
TaqI	TCGA	3 cut(s)	297, 312, 711
TasI	AATT	2 cut(s)	509, 697
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	3 cut(s)	203, 340, 343
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	555, 588
Tru9I	TTAA	2 cut(s)	555, 588
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	2 cut(s)	303, 733
TspDTI	ATGAA	2 cut(s)	443, 483
TspGWI	ACGGA	2 cut(s)	197, 585
TspRI	CASTG	1 cut(s)	323
VneI	GTGCAC	2 cut(s)	471, 891
VpaK11BI	GGWCC	5 cut(s)	264, 351, 520, 809, 1064
VspI	ATTAAT	1 cut(s)	588
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	2 cut(s)	522, 794
XmaJI	CCTAGG	1 cut(s)	683
XspI	CTAG	5 cut(s)	41, 357, 392, 450, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.