Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

25985370 .. 25988138

Gene Structure 2769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGCCGCCGCCGGAGGGGACCACTAGGGATGACACCATCAAGGAGTACATCAAAACCCTAGCCATGGTCGTCGGAAGTGAGGAAGAAGCGAGGATGAAGATCTACTCTGTTTCAACTAGGTGTTATTTTGCATTTGGTGCACTCGTGTCTGAAGAGCTTTCATACAAAATCAAGGAATTGCCAAAGGTCCGCTGGGTGCTTCCTGATTCGTACCTGGATGTTAAGAACAAAGATTACGGAGGCGAACCTTTTATTAATGGGGAAGCAGTACCATATGAACCCAAGTACCATGAGGAATGGATAAGAAACAACAGTCGGGCAAACGAGAGAAACAGGCGCAATGATAGACCTAGGAACTTTGACAATTCAAGGAACTTCGACAGGAGAAGGGAAAACATGCAGCGCAGAGATGGCCCGAATAGGGGTGCCCCTCCTTTTCCTAATCAACCAGGCCAGCATGGGCCTGGCATGGCCGGACCTCCTAGCAACATGAGTCCACCCAACAATATGCCTCCCCCACCTGTGGACAGGCCTCCAATGCCTCCCAACAACACGAGTGCACCAAACTACAACAATATGCCACAGGCAAGCAACAACTGGGGCGGAGGACAGCCGAACTATCAGATGCCGCCTCCAAACAACTACAATCAGGGTTCGCCTAACAACTATAATCAGATGCCTCCAAACAACAATATGCGACGGCCACCACCACCCCAAAACCACATGGGAGGACCGCCACCGCACATGGGAGGACAGCCACCACACATGGGAGGAGGGCAACCTGTGCCATCATGGTCTGATCCTGCACAATACCAAAATACCTACACACCAGAGAGAGATAATGGTGGTGGTCAAAACCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.68

Weight (kDa)

8.85

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 85	2.1e-32	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AciI	CCGC	7 cut(s)	8, 11, 193, 606, 632, 737, 743
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	2 cut(s)	474, 704
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	4 cut(s)	50, 215, 273, 290
AfiI	CCNNNNNNNGG	7 cut(s)	17, 67, 424, 425, 526, 749, 770
AgsI	TTSAA	2 cut(s)	117, 372
AjnI	CCWGG	3 cut(s)	216, 451, 466
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	2 cut(s)	145, 565
Alw44I	GTGCAC	2 cut(s)	141, 561
AlwI	GGATC	1 cut(s)	797
AoxI	GGCC	6 cut(s)	415, 454, 464, 474, 533, 704
ApaLI	GTGCAC	2 cut(s)	141, 561
ApeKI	GCWGC	1 cut(s)	403
AseI	ATTAAT	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	342, 408
AspS9I	GGNCC	6 cut(s)	21, 190, 416, 464, 479, 734
AvaII	GGWCC	4 cut(s)	21, 190, 479, 734
AvrII	CCTAGG	1 cut(s)	353
BaeGI	GKGCMC	3 cut(s)	145, 433, 565
BaeI	ACNNNNGTAYC	2 cut(s)	272, 305
BanI	GGYRCC	1 cut(s)	428
BauI	CACGAG	2 cut(s)	146, 556
Bbv12I	GWGCWC	2 cut(s)	145, 565
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	47, 407, 799
BceAI	ACGGC	1 cut(s)	719
BciT130I	CCWGG	3 cut(s)	218, 453, 468
BfaI	CTAG	5 cut(s)	27, 62, 120, 354, 486
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	4 cut(s)	8, 11, 404, 632
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	4 cut(s)	9, 12, 405, 633
Bme1390I	CCNGG	3 cut(s)	218, 453, 468
Bme18I	GGWCC	4 cut(s)	21, 190, 479, 734
BmgT120I	GGNCC	6 cut(s)	21, 190, 416, 464, 479, 734
BmiI	GGNNCC	3 cut(s)	6, 22, 430
BmrFI	CCNGG	3 cut(s)	218, 453, 468
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	618, 669
BmuI	ACTGGG	1 cut(s)	610
BsaBI	GATNNNNATC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	66, 353
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 67, 424, 425, 526, 749, 770
Bse1I	ACTGG	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	3 cut(s)	218, 453, 468
BseDI	CCNNGG	2 cut(s)	66, 353
BseGI	GGATG	3 cut(s)	37, 102, 226
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	7 cut(s)	17, 67, 424, 425, 526, 749, 770
BseMI	GCAATG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	605
BseRI	GAGGAG	1 cut(s)	789
BseSI	GKGCMC	3 cut(s)	145, 433, 565
BseXI	GCAGC	1 cut(s)	415
BseYI	CCCAGC	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	6 cut(s)	417, 456, 466, 476, 535, 706
BshNI	GGYRCC	1 cut(s)	428
BsiHKAI	GWGCWC	2 cut(s)	145, 565
BsiSI	CCGG	2 cut(s)	14, 477
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	7 cut(s)	17, 67, 424, 425, 526, 749, 770
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	6 cut(s)	417, 456, 466, 476, 535, 706
Bsp1286I	GDGCHC	3 cut(s)	145, 433, 565
Bsp143I	GATC	2 cut(s)	102, 802
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	7 cut(s)	8, 11, 193, 606, 632, 737, 743
BspANI	GGCC	6 cut(s)	417, 456, 466, 476, 535, 706
BspLI	GGNNCC	3 cut(s)	6, 22, 430
BspPI	GGATC	1 cut(s)	797
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	66, 353
BssMI	GATC	2 cut(s)	102, 802
BssSI	CACGAG	2 cut(s)	146, 556
BssT1I	CCWWGG	2 cut(s)	66, 353
Bst2BI	CACGAG	2 cut(s)	146, 556
Bst2UI	CCWGG	3 cut(s)	218, 453, 468
Bst4CI	ACNGT	2 cut(s)	317, 863
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	2 cut(s)	140, 787
BstC8I	GCNNGC	2 cut(s)	458, 592
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	37, 102, 226
BstHHI	GCGC	2 cut(s)	342, 408
BstKTI	GATC	2 cut(s)	105, 805
BstMBI	GATC	2 cut(s)	102, 802
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 414, 541, 787
BstNI	CCWGG	3 cut(s)	218, 453, 468
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	3 cut(s)	216, 451, 466
BstSLI	GKGCMC	3 cut(s)	145, 433, 565
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	6 cut(s)	417, 456, 466, 476, 535, 706
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	37, 102, 226
Cac8I	GCNNGC	2 cut(s)	458, 592
CfoI	GCGC	2 cut(s)	342, 408
Cfr13I	GGNCC	6 cut(s)	21, 190, 416, 464, 479, 734
Csp6I	GTAC	4 cut(s)	49, 214, 272, 289
CviQI	GTAC	4 cut(s)	49, 214, 272, 289
DpnI	GATC	2 cut(s)	104, 804
DpnII	GATC	2 cut(s)	102, 802
EaeI	YGGCCR	2 cut(s)	474, 704
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	621
Eco130I	CCWWGG	2 cut(s)	66, 353
Eco147I	AGGCCT	1 cut(s)	535
Eco47I	GGWCC	4 cut(s)	21, 190, 479, 734
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	3 cut(s)	216, 451, 466
EcoT14I	CCWWGG	2 cut(s)	66, 353
ErhI	CCWWGG	2 cut(s)	66, 353
FaqI	GGGAC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	8, 11, 404, 632
FokI	GGATG	3 cut(s)	44, 109, 233
Fsp4HI	GCNGC	4 cut(s)	8, 11, 404, 632
FspBI	CTAG	5 cut(s)	27, 62, 120, 354, 486
GlaI	GCGC	2 cut(s)	341, 407
GluI	GCNGC	4 cut(s)	8, 11, 404, 632
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	6 cut(s)	417, 456, 466, 476, 535, 706
HapII	CCGG	2 cut(s)	14, 477
HhaI	GCGC	2 cut(s)	342, 408
Hin6I	GCGC	2 cut(s)	340, 406
HinP1I	GCGC	2 cut(s)	340, 406
HinfI	GANTC	2 cut(s)	209, 496
HpaII	CCGG	2 cut(s)	14, 477
Hpy166II	GTNNAC	4 cut(s)	143, 500, 529, 563
Hpy188I	TCNGA	5 cut(s)	77, 154, 627, 678, 802
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	4 cut(s)	143, 500, 529, 563
Hpy99I	CGWCG	2 cut(s)	77, 705
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	2 cut(s)	317, 863
HpyCH4V	TGCA	5 cut(s)	134, 143, 403, 563, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 414, 541, 787
HspAI	GCGC	2 cut(s)	340, 406
Kzo9I	GATC	2 cut(s)	102, 802
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	618, 669
MaeI	CTAG	5 cut(s)	27, 62, 120, 354, 486
MalI	GATC	2 cut(s)	104, 804
MboI	GATC	2 cut(s)	102, 802
MboII	GAAGA	3 cut(s)	98, 112, 167
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	145, 433, 565
MluCI	AATT	2 cut(s)	179, 367
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	55
MseI	TTAA	2 cut(s)	225, 258
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	14, 477
MspR9I	CCNGG	3 cut(s)	218, 453, 468
MvaI	CCWGG	3 cut(s)	218, 453, 468
MwoI	GCNNNNNNNGC	4 cut(s)	140, 414, 541, 787
NcoI	CCATGG	1 cut(s)	66
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	102, 802
NlaIV	GGNNCC	3 cut(s)	6, 22, 430
NspI	RCATGY	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	4 cut(s)	9, 12, 405, 633
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PshBI	ATTAAT	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	216, 451, 466
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	3 cut(s)	216, 451, 466
PspN4I	GGNNCC	3 cut(s)	6, 22, 430
PspPI	GGNCC	6 cut(s)	21, 190, 416, 464, 479, 734
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	4 cut(s)	50, 215, 273, 290
RsaNI	GTAC	4 cut(s)	49, 214, 272, 289
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	225, 258
SatI	GCNGC	4 cut(s)	8, 11, 404, 632
Sau3AI	GATC	2 cut(s)	102, 802
Sau96I	GGNCC	6 cut(s)	21, 190, 416, 464, 479, 734
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	3 cut(s)	218, 453, 468
SduI	GDGCHC	3 cut(s)	145, 433, 565
SfaNI	GCATC	2 cut(s)	618, 669
SinI	GGWCC	4 cut(s)	21, 190, 479, 734
Sse9I	AATT	2 cut(s)	179, 367
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	7 cut(s)	8, 11, 193, 606, 632, 737, 743
SspMI	CTAG	5 cut(s)	27, 62, 120, 354, 486
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	3 cut(s)	216, 451, 466
StyI	CCWWGG	2 cut(s)	66, 353
TaaI	ACNGT	2 cut(s)	317, 863
TaqI	TCGA	1 cut(s)	381
TasI	AATT	2 cut(s)	179, 367
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	3 cut(s)	10, 13, 634
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	225, 258
Tru9I	TTAA	2 cut(s)	225, 258
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	113, 153, 294
TspGWI	ACGGA	1 cut(s)	255
VneI	GTGCAC	2 cut(s)	141, 561
VpaK11BI	GGWCC	4 cut(s)	21, 190, 479, 734
VspI	ATTAAT	1 cut(s)	258
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	192, 464
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	5 cut(s)	27, 62, 120, 354, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.