Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002426.1

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Reverse (-)

30021 .. 30491

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002426.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcagcgcagagatggcccgaataggggtgcccctccttttcctaatcaaccaggccagcatgggcctggcatggccggacctcccagcaacatgagtccacccaacaatatgcctcccccacctgtggacaggcctccaatgcctcccaacaacacgagtgcaccaaactacaacaatatgccacaggcaagcaacaactggggcggaggacagccgaactacaatcagatgcctccaaacaactacaatctggggccgcctaacaactataatcagatgcctccaaacaacaatatgcgacggccaccaccaccccaaaaccacatgggaggaccgccaccacacatgggaggacagccaccacacatgggaggagggcaacctgcgccatcatggtctgatcctgcacaataccaaaatacctacacaccagagagagataatggtggtggtcaaaaccgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.88

Weight (kDa)

9.59

Isoelectric Point (pI)

77.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	3 cut(s)	207, 260, 338
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	2 cut(s)	75, 305
AfiI	CCNNNNNNNGG	5 cut(s)	25, 26, 127, 350, 371
AjnI	CCWGG	2 cut(s)	52, 67
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	7 cut(s)	16, 55, 65, 75, 134, 257, 305
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	9, 391
AspS9I	GGNCC	5 cut(s)	17, 65, 80, 257, 335
AvaII	GGWCC	2 cut(s)	80, 335
BaeGI	GKGCMC	2 cut(s)	34, 166
BanI	GGYRCC	1 cut(s)	29
BauI	CACGAG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	8, 400
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	54, 69
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	5, 260
BlsI	GCNGC	2 cut(s)	6, 261
Bme1390I	CCNGG	2 cut(s)	54, 69
Bme18I	GGWCC	2 cut(s)	80, 335
BmgT120I	GGNCC	5 cut(s)	17, 65, 80, 257, 335
BmiI	GGNNCC	2 cut(s)	31, 258
BmrFI	CCNGG	2 cut(s)	54, 69
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	2 cut(s)	222, 270
BmuI	ACTGGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 26, 127, 350, 371
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	54, 69
BseLI	CCNNNNNNNGG	5 cut(s)	25, 26, 127, 350, 371
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	390
BseSI	GKGCMC	2 cut(s)	34, 166
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	86
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	7 cut(s)	18, 57, 67, 77, 136, 259, 307
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	5 cut(s)	25, 26, 127, 350, 371
BsnI	GGCC	7 cut(s)	18, 57, 67, 77, 136, 259, 307
Bsp1286I	GDGCHC	2 cut(s)	34, 166
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	3 cut(s)	207, 260, 338
BspANI	GGCC	7 cut(s)	18, 57, 67, 77, 136, 259, 307
BspLI	GGNNCC	2 cut(s)	31, 258
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	157
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	54, 69
Bst4CI	ACNGT	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	59, 193
BstHHI	GCGC	2 cut(s)	9, 391
BstKTI	GATC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 142, 388
BstNI	CCWGG	2 cut(s)	54, 69
BstSCI	CCNGG	2 cut(s)	52, 67
BstSLI	GKGCMC	2 cut(s)	34, 166
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	7 cut(s)	18, 57, 67, 77, 136, 259, 307
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	59, 193
CfoI	GCGC	2 cut(s)	9, 391
Cfr13I	GGNCC	5 cut(s)	17, 65, 80, 257, 335
CviAII	CATG	7 cut(s)	62, 73, 94, 328, 349, 370, 396
CviJI	RGCY	9 cut(s)	18, 57, 67, 77, 136, 217, 259, 307, 361
CviKI_1	RGCY	9 cut(s)	18, 57, 67, 77, 136, 217, 259, 307, 361
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	75, 305
EciI	GGCGGA	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	80, 335
EcoRII	CCWGG	2 cut(s)	52, 67
FaeI	CATG	7 cut(s)	65, 76, 97, 331, 352, 373, 399
FatI	CATG	7 cut(s)	61, 72, 93, 327, 348, 369, 395
Fnu4HI	GCNGC	2 cut(s)	5, 260
Fsp4HI	GCNGC	2 cut(s)	5, 260
GlaI	GCGC	2 cut(s)	8, 390
GluI	GCNGC	2 cut(s)	5, 260
GsaI	CCCAGC	1 cut(s)	90
HaeIII	GGCC	7 cut(s)	18, 57, 67, 77, 136, 259, 307
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	9, 391
Hin1II	CATG	7 cut(s)	65, 76, 97, 331, 352, 373, 399
Hin6I	GCGC	2 cut(s)	7, 389
HinP1I	GCGC	2 cut(s)	7, 389
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	3 cut(s)	101, 130, 164
Hpy188I	TCNGA	3 cut(s)	231, 279, 403
Hpy8I	GTNNAC	3 cut(s)	101, 130, 164
Hpy99I	CGWCG	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4V	TGCA	3 cut(s)	4, 164, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 142, 388
Hsp92II	CATG	7 cut(s)	65, 76, 97, 331, 352, 373, 399
HspAI	GCGC	2 cut(s)	7, 389
Kzo9I	GATC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	222, 270
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MhlI	GDGCHC	2 cut(s)	34, 166
MlyI	GAGTC	1 cut(s)	106
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	54, 69
MvaI	CCWGG	2 cut(s)	54, 69
MwoI	GCNNNNNNNGC	3 cut(s)	15, 142, 388
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	7 cut(s)	65, 76, 97, 331, 352, 373, 399
NlaIV	GGNNCC	2 cut(s)	31, 258
PceI	AGGCCT	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	6, 261
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	52, 67
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	2 cut(s)	52, 67
PspN4I	GGNNCC	2 cut(s)	31, 258
PspPI	GGNCC	5 cut(s)	17, 65, 80, 257, 335
SatI	GCNGC	2 cut(s)	5, 260
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	5 cut(s)	17, 65, 80, 257, 335
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	54, 69
SduI	GDGCHC	2 cut(s)	34, 166
SetI	ASST	4 cut(s)	85, 127, 388, 428
SfaNI	GCATC	2 cut(s)	222, 270
SinI	GGWCC	2 cut(s)	80, 335
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	3 cut(s)	207, 260, 338
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	52, 67
TaaI	ACNGT	1 cut(s)	464
TauI	GCSGC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	4
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	80, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.