Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

25133918 .. 25136562

Gene Structure 2645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG217700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGATCTACTCTGTTTCAACTAGGTGTTATTTTGCATTTGGTGCACTCGTGTCTGAAGAGCTTTCATACAAAATCAAGGAATTGCCAAAGGTCCGCTGGGTGCTTCCTGATTCGTACCTGGATGTTAAGAACAAAGATTACGGAGGCGAACCTTTTATTAATGGGGAAGCAGTACCATATGAACCCAAGTACCATGAGGAATGGATAAGAAACAACAGTCGGGCAAACGAGAGAAACAGGCGCAATGATAGACCTAGGAACTTTGACAATTCAAGGAACTTTGACAGGAGAAGGGAAAACATGCAGCGCAGAGATGGCCCGAATAGGGGTGCCCCTCCTTTTCCTAATCAACCAGGCCAGCATGAGCCTGGCATGGCCGGACCTCCCAGCAACATGAGTCCACCCAACAATTTGCCTCCCCCACCTGTGGACAGGCCTCCAATGCCTCCCAACAACACGAGTGCACCAAACTACAACAATATGCCACAGGCAAGCAACAACTGGGGCGGAGGACAGCCGAACTACAATCAGATGCCTCCAAACAACTACAATCTGGGGCCGCCTAACAACTATAATCAGATGCCTCCAAACAACAATATGCGACGGCCACCACCACCCCAAAACCACATGGGAGGACCGCCACCACACATGGGAGGACAGCCACCACACATGGGAGGAGGGCAACCTGCGCCATCATGGTCTGATCCTGCACAATACCAAAATACCTACACACCAGAGAGAGATAATGGTGGTGGTCAAAACCGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.14

Weight (kDa)

9.4

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	1 - 53	9.2e-19	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	4 cut(s)	97, 510, 563, 641
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	2 cut(s)	378, 608
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	119, 177, 194
AfiI	CCNNNNNNNGG	5 cut(s)	328, 329, 430, 653, 674
AgsI	TTSAA	2 cut(s)	21, 276
AjnI	CCWGG	3 cut(s)	120, 355, 370
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	2 cut(s)	49, 469
Alw44I	GTGCAC	2 cut(s)	45, 465
AlwI	GGATC	1 cut(s)	701
AoxI	GGCC	6 cut(s)	319, 358, 378, 437, 560, 608
ApaLI	GTGCAC	2 cut(s)	45, 465
ApeKI	GCWGC	1 cut(s)	307
AseI	ATTAAT	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	246, 312, 694
AspS9I	GGNCC	5 cut(s)	94, 320, 383, 560, 638
AvaII	GGWCC	3 cut(s)	94, 383, 638
AvrII	CCTAGG	1 cut(s)	257
BaeGI	GKGCMC	3 cut(s)	49, 337, 469
BaeI	ACNNNNGTAYC	2 cut(s)	176, 209
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	2 cut(s)	50, 460
Bbv12I	GWGCWC	2 cut(s)	49, 469
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	311, 703
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	3 cut(s)	122, 357, 372
BfaI	CTAG	2 cut(s)	24, 258
BfuAI	ACCTGC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	2 cut(s)	308, 563
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	309, 564
Bme1390I	CCNGG	3 cut(s)	122, 357, 372
Bme18I	GGWCC	3 cut(s)	94, 383, 638
BmgT120I	GGNCC	5 cut(s)	94, 320, 383, 560, 638
BmiI	GGNNCC	2 cut(s)	334, 561
BmrFI	CCNGG	3 cut(s)	122, 357, 372
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	2 cut(s)	525, 573
BmuI	ACTGGG	1 cut(s)	514
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	5 cut(s)	328, 329, 430, 653, 674
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	3 cut(s)	122, 357, 372
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	5 cut(s)	328, 329, 430, 653, 674
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	3 cut(s)	49, 337, 469
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	2 cut(s)	99, 389
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	6 cut(s)	321, 360, 380, 439, 562, 610
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	49, 469
BsiSI	CCGG	1 cut(s)	381
BslI	CCNNNNNNNGG	5 cut(s)	328, 329, 430, 653, 674
BsnI	GGCC	6 cut(s)	321, 360, 380, 439, 562, 610
Bsp1286I	GDGCHC	3 cut(s)	49, 337, 469
Bsp143I	GATC	2 cut(s)	6, 706
BspACI	CCGC	4 cut(s)	97, 510, 563, 641
BspANI	GGCC	6 cut(s)	321, 360, 380, 439, 562, 610
BspLI	GGNNCC	2 cut(s)	334, 561
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	1 cut(s)	701
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	6, 706
BssSI	CACGAG	2 cut(s)	50, 460
BssT1I	CCWWGG	1 cut(s)	257
Bst2BI	CACGAG	2 cut(s)	50, 460
Bst2UI	CCWGG	3 cut(s)	122, 357, 372
Bst4CI	ACNGT	2 cut(s)	221, 767
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	362, 496
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	3 cut(s)	246, 312, 694
BstKTI	GATC	2 cut(s)	9, 709
BstMBI	GATC	2 cut(s)	6, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 318, 445, 691
BstNI	CCWGG	3 cut(s)	122, 357, 372
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	3 cut(s)	120, 355, 370
BstSLI	GKGCMC	3 cut(s)	49, 337, 469
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	6 cut(s)	321, 360, 380, 439, 562, 610
BtsCI	GGATG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	362, 496
CfoI	GCGC	3 cut(s)	246, 312, 694
Cfr13I	GGNCC	5 cut(s)	94, 320, 383, 560, 638
Csp6I	GTAC	3 cut(s)	118, 176, 193
CviAII	CATG	9 cut(s)	197, 304, 365, 376, 397, 631, 652, 673, 699
CviQI	GTAC	3 cut(s)	118, 176, 193
DpnI	GATC	2 cut(s)	8, 708
DpnII	GATC	2 cut(s)	6, 706
EaeI	YGGCCR	2 cut(s)	378, 608
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	439
Eco47I	GGWCC	3 cut(s)	94, 383, 638
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	120, 355, 370
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	9 cut(s)	200, 307, 368, 379, 400, 634, 655, 676, 702
FatI	CATG	9 cut(s)	196, 303, 364, 375, 396, 630, 651, 672, 698
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	308, 563
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	2 cut(s)	308, 563
FspBI	CTAG	2 cut(s)	24, 258
GlaI	GCGC	3 cut(s)	245, 311, 693
GluI	GCNGC	2 cut(s)	308, 563
GsaI	CCCAGC	2 cut(s)	103, 393
HaeIII	GGCC	6 cut(s)	321, 360, 380, 439, 562, 610
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	3 cut(s)	246, 312, 694
Hin1II	CATG	9 cut(s)	200, 307, 368, 379, 400, 634, 655, 676, 702
Hin6I	GCGC	3 cut(s)	244, 310, 692
HinP1I	GCGC	3 cut(s)	244, 310, 692
HinfI	GANTC	2 cut(s)	113, 400
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	4 cut(s)	47, 404, 433, 467
Hpy188I	TCNGA	4 cut(s)	58, 534, 582, 706
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	4 cut(s)	47, 404, 433, 467
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	2 cut(s)	221, 767
HpyCH4V	TGCA	5 cut(s)	38, 47, 307, 467, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 318, 445, 691
Hsp92II	CATG	9 cut(s)	200, 307, 368, 379, 400, 634, 655, 676, 702
HspAI	GCGC	3 cut(s)	244, 310, 692
Kzo9I	GATC	2 cut(s)	6, 706
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	525, 573
MaeI	CTAG	2 cut(s)	24, 258
MalI	GATC	2 cut(s)	8, 708
MboI	GATC	2 cut(s)	6, 706
MboII	GAAGA	2 cut(s)	16, 71
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	49, 337, 469
MluCI	AATT	3 cut(s)	83, 271, 412
MlyI	GAGTC	1 cut(s)	409
MseI	TTAA	2 cut(s)	129, 162
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	3 cut(s)	122, 357, 372
MvaI	CCWGG	3 cut(s)	122, 357, 372
MwoI	GCNNNNNNNGC	4 cut(s)	44, 318, 445, 691
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	6, 706
NlaIII	CATG	9 cut(s)	200, 307, 368, 379, 400, 634, 655, 676, 702
NlaIV	GGNNCC	2 cut(s)	334, 561
NspI	RCATGY	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	439
PciSI	GCTCTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	309, 564
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	120, 355, 370
PspFI	CCCAGC	2 cut(s)	99, 389
PspGI	CCWGG	3 cut(s)	120, 355, 370
PspN4I	GGNNCC	2 cut(s)	334, 561
PspPI	GGNCC	5 cut(s)	94, 320, 383, 560, 638
PsrI	GAACNNNNNNTAC	2 cut(s)	125, 157
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	3 cut(s)	119, 177, 194
RsaNI	GTAC	3 cut(s)	118, 176, 193
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	129, 162
SatI	GCNGC	2 cut(s)	308, 563
Sau3AI	GATC	2 cut(s)	6, 706
Sau96I	GGNCC	5 cut(s)	94, 320, 383, 560, 638
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	3 cut(s)	122, 357, 372
SduI	GDGCHC	3 cut(s)	49, 337, 469
SfaNI	GCATC	2 cut(s)	525, 573
SinI	GGWCC	3 cut(s)	94, 383, 638
Sse9I	AATT	3 cut(s)	83, 271, 412
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	4 cut(s)	97, 510, 563, 641
SspMI	CTAG	2 cut(s)	24, 258
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	3 cut(s)	120, 355, 370
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	221, 767
TasI	AATT	3 cut(s)	83, 271, 412
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	129, 162
Tru9I	TTAA	2 cut(s)	129, 162
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	17, 57, 198
TspGWI	ACGGA	1 cut(s)	159
VneI	GTGCAC	2 cut(s)	45, 465
VpaK11BI	GGWCC	3 cut(s)	94, 383, 638
VspI	ATTAAT	1 cut(s)	162
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	2 cut(s)	96, 368
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	2 cut(s)	24, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.