Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009062

Physical Location & Seq

Genomic Coordinates Forward (+)

5050195 .. 5052455

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCGACGCATACCATTTCTCGATCCATTCTTTGCCGACCGGCGAAATCTCTTTCGTTTCTGTTCACGCGATCCTTTGCTTCATCTGCTCCTCTCGCCAAATCTCCGGCGTCTTCTCTGCTCAGCCGGTCCCGTCCTCTGGTCGCCGCTTTTTCCTCCGTTTTCCGTGGCGGCCTTGTGTCTGTCAAAGGTCTCTCGACGCAGGCTACATCGTCTTCTCTGAACGACCCGAATCCCAACTGGTCGAACAGGCCACCTAAGGAGACGATCCTGCTCGATGGTTGCGATTTCGAGCACTGGCTTGTCGTCGTGGAGCCACCTCAGGGTGAGCCTACTAGAGATGAAATCATTGATAGCTACATCAAAACCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGGATGAAGATCTACTCGGTTTCAACTAGGTGCTACTATGCTTTTGGGGCACTTGTGTCAGAAGATCTTTCTCACAAGTTAAAAGAGTTGTCAAATGTGCGCTGGGTTCTTCCTGACTCTTACCTGGATGTGAGGAACAAAGACTATGGAGGGGAACCTTTCATCGATGGGAAGGCTGTTCCTTATGATCCTAAGTACCACGAGGAGTGGATAAGGAACAATGCTAGAGCAAATGAAAGGAACAGACGCAATGACCGTCCTCGCAACAATGATAGAAGCAGAAACTTTGAGAGGAGAAGAGAGAACATGGCAGGAGGCCCTCCTCCTCAACGTCCTCCCATGGGAGGCCCTCCTCCTCCTCCGCACATCGGTGGCTCTGCACCTCCTCCGCCTCATATGGGTGGCTCTGCACCTCCTCCACCTCACATGGGGCAGAACTATGGACCACCACCACCAAACAACATGGGAGGACCAAGGCATCCACCACCTTATGGAGCACCACCGCAAAACAACATGGGAGGACCGAGGCCACCTCAGAACTATGGAGGAACACCACCTCCCAACTATGGAGGAGCACCACCAGCAAACAACATGGGAGGAGCACCACCACCAAACTATGGAGGAGGACCACCACCTCAATATGGAGCAGTACCACCACCTCAATACGGAGGAGCACCCCCACAGAACAACAACTACCAGCAGCAGGGTAGTGGAATGCAGCAGCCACAGTACCAGAACAACTACCCACCTAACCGGGATGGCAGTGGCAACCCCTACCAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

42.87

Weight (kDa)

9.38

Isoelectric Point (pI)

66.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	97 - 188	3.9e-37	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53260 AT1G53260 AT3G15000
fragaria_vesca	FvH4_3g18600
malus_domestica	MD03G1240700.v1.1 MD11G1260100.v1.1
prunus_persica	Prupe.4G168200_v2.0.a1
pyrus_communis	pycom03g18720 pycom11g22960
rosa_chinensis	RchiOBHm_Chr5g0031431
rosa_laevigata	RLG00000033306
rosa_multiflora	Rmu_co8400365.1_g000001 Rmu_sc0002426.1_g000011 Rmu_sc0014478.1_g000008 Rmu_sc0014478.1_g000009
rosa_roxburghii	Rroxscaffold_1G00048920
rosa_rugosa	Rorug05G0125300
rosa_samantha	Rh5AG218100 Rh5BG217700 Rh5CG241400 Rh5DG223000
rosa_wichuraiana	Rw5G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	893, 1019
AccII	CGCG	1 cut(s)	70
AciI	CCGC	5 cut(s)	147, 171, 764, 791, 905
AclWI	GGATC	4 cut(s)	18, 66, 262, 584
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	3 cut(s)	599, 1053, 1133
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	2 cut(s)	525, 1179
AleI	CACNNNNGTG	1 cut(s)	771
AloI	GAACNNNNNNTCC	2 cut(s)	943, 975
AluBI	AGCT	3 cut(s)	357, 374, 401
AluI	AGCT	3 cut(s)	357, 374, 401
Alw21I	GWGCWC	5 cut(s)	297, 901, 979, 1006, 1078
Alw26I	GTCTC	2 cut(s)	197, 257
AlwI	GGATC	4 cut(s)	18, 66, 262, 584
AoxI	GGCC	5 cut(s)	172, 251, 718, 748, 929
ApeKI	GCWGC	3 cut(s)	1102, 1120, 1123
AspLEI	GCGC	1 cut(s)	504
AspS9I	GGNCC	7 cut(s)	129, 719, 749, 845, 872, 923, 1028
AsuC2I	CCSGG	1 cut(s)	1157
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	5 cut(s)	129, 845, 872, 923, 1028
AxyI	CCTNAGG	2 cut(s)	258, 321
BaeGI	GKGCMC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	3 cut(s)	105, 207, 399
Bbv12I	GWGCWC	5 cut(s)	297, 901, 979, 1006, 1078
BbvI	GCAGC	3 cut(s)	1114, 1132, 1135
BccI	CCATC	3 cut(s)	272, 563, 1154
BciT130I	CCWGG	2 cut(s)	527, 1181
BcnI	CCSGG	1 cut(s)	1157
BcoDI	GTCTC	2 cut(s)	197, 257
BfaI	CTAG	5 cut(s)	336, 371, 402, 429, 627
BglII	AGATCT	2 cut(s)	411, 466
BisI	GCNGC	5 cut(s)	147, 172, 1103, 1121, 1124
BlpI	GCTNAGC	1 cut(s)	122
BlsI	GCNGC	5 cut(s)	148, 173, 1104, 1122, 1125
Bme1390I	CCNGG	3 cut(s)	527, 1157, 1181
Bme18I	GGWCC	5 cut(s)	129, 845, 872, 923, 1028
BmgT120I	GGNCC	7 cut(s)	129, 719, 749, 845, 872, 923, 1028
BmiI	GGNNCC	3 cut(s)	131, 315, 558
BmrFI	CCNGG	3 cut(s)	527, 1157, 1181
BmsI	GCATC	1 cut(s)	889
BpiI	GAAGAC	3 cut(s)	105, 207, 399
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
Bpu1102I	GCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	1157
Bsa29I	ATCGAT	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	5 cut(s)	166, 741, 875, 926, 1180
BsaXI	ACNNNNNCTCC	2 cut(s)	943, 973
Bse118I	RCCGGY	2 cut(s)	40, 126
Bse1I	ACTGG	2 cut(s)	245, 302
Bse21I	CCTNAGG	2 cut(s)	258, 321
Bse3DI	GCAATG	1 cut(s)	658
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	527, 1181
BseCI	ATCGAT	1 cut(s)	567
BseDI	CCNNGG	5 cut(s)	166, 741, 875, 926, 1180
BseGI	GGATG	4 cut(s)	411, 535, 880, 1165
BseJI	GATNNNNATC	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	4 cut(s)	136, 335, 389, 950
BseNI	ACTGG	2 cut(s)	245, 302
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	3 cut(s)	1114, 1132, 1135
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	2 cut(s)	765, 795
Bsh1236I	CGCG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	41
BshFI	GGCC	5 cut(s)	174, 253, 720, 750, 931
BshVI	ATCGAT	1 cut(s)	567
BsiEI	CGRYCG	1 cut(s)	41
BsiHKAI	GWGCWC	5 cut(s)	297, 901, 979, 1006, 1078
BsiSI	CCGG	4 cut(s)	41, 107, 127, 1156
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	197, 257
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	1122
BsnI	GGCC	5 cut(s)	174, 253, 720, 750, 931
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	6 cut(s)	297, 454, 901, 979, 1006, 1078
Bsp143I	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
Bsp1720I	GCTNAGC	1 cut(s)	122
Bsp19I	CCATGG	1 cut(s)	741
BspACI	CCGC	5 cut(s)	147, 171, 764, 791, 905
BspANI	GGCC	5 cut(s)	174, 253, 720, 750, 931
BspCNI	CTCAG	4 cut(s)	135, 334, 388, 949
BspDI	ATCGAT	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	131, 315, 558
BspPI	GGATC	4 cut(s)	18, 66, 262, 584
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	658
BsrFI	RCCGGY	2 cut(s)	40, 126
BsrI	ACTGG	2 cut(s)	245, 302
BssAI	RCCGGY	2 cut(s)	40, 126
BssECI	CCNNGG	5 cut(s)	166, 741, 875, 926, 1180
BssMI	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
BssNI	GRCGYC	1 cut(s)	110
BssSI	CACGAG	1 cut(s)	602
BssT1I	CCWWGG	2 cut(s)	741, 875
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	527, 1181
Bst4CI	ACNGT	2 cut(s)	659, 1131
Bst6I	CTCTTC	1 cut(s)	694
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	6 cut(s)	122, 258, 321, 375, 594, 936
BstDSI	CCRYGG	2 cut(s)	166, 741
BstF5I	GGATG	4 cut(s)	411, 535, 880, 1165
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	6 cut(s)	26, 74, 270, 414, 469, 592
BstMAI	GTCTC	2 cut(s)	197, 257
BstMBI	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 449, 983
BstNI	CCWGG	2 cut(s)	527, 1181
BstSCI	CCNGG	3 cut(s)	525, 1155, 1179
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	3 cut(s)	1114, 1132, 1135
BstV2I	GAAGAC	3 cut(s)	105, 207, 399
BstX2I	RGATCY	2 cut(s)	411, 466
BstYI	RGATCY	2 cut(s)	411, 466
Bsu15I	ATCGAT	1 cut(s)	567
Bsu36I	CCTNAGG	2 cut(s)	258, 321
BsuRI	GGCC	5 cut(s)	174, 253, 720, 750, 931
BsuTUI	ATCGAT	1 cut(s)	567
BtgI	CCRYGG	2 cut(s)	166, 741
BtsCI	GGATG	4 cut(s)	411, 535, 880, 1165
BtsI	GCAGTG	2 cut(s)	394, 1171
BtsIMutI	CAGTG	3 cut(s)	295, 394, 1171
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	2 cut(s)	40, 126
Cfr13I	GGNCC	7 cut(s)	129, 719, 749, 845, 872, 923, 1028
ClaI	ATCGAT	1 cut(s)	567
CseI	GACGC	4 cut(s)	16, 99, 208, 657
Csp6I	GTAC	3 cut(s)	598, 1052, 1132
CviAII	CATG	6 cut(s)	709, 742, 829, 865, 916, 994
CviQI	GTAC	3 cut(s)	598, 1052, 1132
DdeI	CTNAG	6 cut(s)	122, 258, 321, 375, 594, 936
DpnI	GATC	6 cut(s)	25, 73, 269, 413, 468, 591
DpnII	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
EciI	GGCGGA	1 cut(s)	780
Eco130I	CCWWGG	2 cut(s)	741, 875
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	5 cut(s)	129, 845, 872, 923, 1028
Eco81I	CCTNAGG	2 cut(s)	258, 321
EcoO109I	RGGNCCY	2 cut(s)	719, 749
EcoRII	CCWGG	2 cut(s)	525, 1179
EcoT14I	CCWWGG	2 cut(s)	741, 875
ErhI	CCWWGG	2 cut(s)	741, 875
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	6 cut(s)	712, 745, 832, 868, 919, 997
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	6 cut(s)	708, 741, 828, 864, 915, 993
FauNDI	CATATG	1 cut(s)	798
Fnu4HI	GCNGC	5 cut(s)	147, 172, 1103, 1121, 1124
FokI	GGATG	4 cut(s)	418, 542, 867, 1172
Fsp4HI	GCNGC	5 cut(s)	147, 172, 1103, 1121, 1124
FspBI	CTAG	5 cut(s)	336, 371, 402, 429, 627
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	5 cut(s)	147, 172, 1103, 1121, 1124
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	5 cut(s)	174, 253, 720, 750, 931
HapII	CCGG	4 cut(s)	41, 107, 127, 1156
HgaI	GACGC	4 cut(s)	16, 99, 208, 657
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	6 cut(s)	712, 745, 832, 868, 919, 997
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	232, 518
HpaII	CCGG	4 cut(s)	41, 107, 127, 1156
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	222, 378, 463, 939
Hpy188III	TCNNGA	3 cut(s)	21, 196, 515
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	10, 202, 311
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	659, 1131
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	3 cut(s)	782, 812, 1120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 449, 983
HpyF3I	CTNAG	6 cut(s)	122, 258, 321, 375, 594, 936
HpySE526I	ACGT	1 cut(s)	733
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	6 cut(s)	712, 745, 832, 868, 919, 997
HspAI	GCGC	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
LmnI	GCTCC	7 cut(s)	94, 313, 896, 974, 1001, 1046, 1073
Lsp1109I	GCAGC	3 cut(s)	1114, 1132, 1135
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	5 cut(s)	336, 371, 402, 429, 627
MaeII	ACGT	1 cut(s)	733
MalI	GATC	6 cut(s)	25, 73, 269, 413, 468, 591
MboI	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
MboII	GAAGA	7 cut(s)	105, 207, 404, 421, 476, 503, 711
MflI	RGATCY	2 cut(s)	411, 466
MhlI	GDGCHC	6 cut(s)	297, 454, 901, 979, 1006, 1078
MlyI	GAGTC	1 cut(s)	512
MseI	TTAA	2 cut(s)	482, 1186
MslI	CAYNNNNRTG	2 cut(s)	771, 801
MspI	CCGG	4 cut(s)	41, 107, 127, 1156
MspR9I	CCNGG	3 cut(s)	527, 1157, 1181
Mva1269I	GAATGC	1 cut(s)	1122
MvaI	CCWGG	2 cut(s)	527, 1181
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 449, 983
NciI	CCSGG	1 cut(s)	1157
NcoI	CCATGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	798
NdeII	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
NlaIII	CATG	6 cut(s)	712, 745, 832, 868, 919, 997
NlaIV	GGNNCC	3 cut(s)	131, 315, 558
OliI	CACNNNNGTG	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	2 cut(s)	282, 655
PctI	GAATGC	1 cut(s)	1122
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	2 cut(s)	893, 1019
PkrI	GCNGC	5 cut(s)	148, 173, 1104, 1122, 1125
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	525, 1179
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	2 cut(s)	525, 1179
PspN4I	GGNNCC	3 cut(s)	131, 315, 558
PspPI	GGNCC	7 cut(s)	129, 719, 749, 845, 872, 923, 1028
PsrI	GAACNNNNNNTAC	2 cut(s)	1079, 1111
PsuI	RGATCY	2 cut(s)	411, 466
RsaI	GTAC	3 cut(s)	599, 1053, 1133
RsaNI	GTAC	3 cut(s)	598, 1052, 1132
RseI	CAYNNNNRTG	2 cut(s)	771, 801
SaqAI	TTAA	2 cut(s)	482, 1186
SatI	GCNGC	5 cut(s)	147, 172, 1103, 1121, 1124
Sau3AI	GATC	6 cut(s)	23, 71, 267, 411, 466, 589
Sau96I	GGNCC	7 cut(s)	129, 719, 749, 845, 872, 923, 1028
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	3 cut(s)	527, 1157, 1181
SduI	GDGCHC	6 cut(s)	297, 454, 901, 979, 1006, 1078
SfaNI	GCATC	1 cut(s)	889
SinI	GGWCC	5 cut(s)	129, 845, 872, 923, 1028
SmiMI	CAYNNNNRTG	2 cut(s)	771, 801
SsiI	CCGC	5 cut(s)	147, 171, 764, 791, 905
SspMI	CTAG	5 cut(s)	336, 371, 402, 429, 627
StyD4I	CCNGG	3 cut(s)	525, 1155, 1179
StyI	CCWWGG	2 cut(s)	741, 875
TaaI	ACNGT	2 cut(s)	659, 1131
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	6 cut(s)	22, 197, 245, 276, 291, 567
TaqII	GACCGA	1 cut(s)	940
TauI	GCSGC	2 cut(s)	149, 174
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	482, 1186
Tru9I	TTAA	2 cut(s)	482, 1186
TscAI	CASTG	3 cut(s)	302, 394, 1171
TseI	GCWGC	3 cut(s)	1102, 1120, 1123
TspDTI	ATGAA	5 cut(s)	72, 357, 422, 553, 651
TspGWI	ACGGA	3 cut(s)	148, 155, 1083
TspRI	CASTG	3 cut(s)	302, 394, 1171
Van91I	CCANNNNNTGG	2 cut(s)	893, 1019
VpaK11BI	GGWCC	5 cut(s)	129, 845, 872, 923, 1028
XspI	CTAG	5 cut(s)	336, 371, 402, 429, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.