Rh5AG218100

protein At3g15000, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
25695459 .. 25699104
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG218100.1

Sequence Viewer

Length: 1194 bp
ATGGCTACCCATTTCCTCTCTCGCTCCTTCCCCAAAACCCTAGCCCTCTCCTCCTTCCTCTCCCGCTCTCTTTCCACCGCCGCCACCACCGCCTCCACCCTCTCCTCCGCTCACTCCCGCTCCTCCCTCTCCCTCATCAGCCGCCTCCGCCCCCTCGCCGGCGCCATCGCCTTCCCGGGCAAGCTCTCTCCCGCCGCCATCCGTTTCTTCTCGGCCAACGCCACCACCTCCTCGCTCCGGGACCCGAACCCCAACTGGTCCAACCGGCCTCCCAAGGAGACTATCCTCCTCGATGGCTGCGACTTCGAGCACTGGCTCGTCGTCATGGAGCCGCCGCCGGAGGGGACCACTAGGGATGACACCATCAAGGAGTACATCAAAACCCTAGCCATGGTCGTCGGAAGTGAGGAAGAAGCGAGGATGAAGATCTACTCTGTTTCAACTAGGTGTTATTTTGCATTTGGTGCACTCGTGTCTGAAGAGCTTTCATACAAAATCAAGGAATTGCCAAAGGTCCGCTGGGTGCTTCCTGATTCGTACCTGGATGTTAAGAACAAAGATTACGGAGGTGAACCTTTTATTAATGGGGAAGCAGTACCATATGATCCCAAGTACCATGAGGAATGGATAAGAAACAACAGTCGGGCAAACGAGAGAAACAGGCGCAATGATAGACCTAGGAACTTTGACAATTCAAGGAACTTCGACAGGAGAAGGGAAAACATGCAGCGCAGAGATGGCCCGAATAGGGGTGCCCCTCCTTTTCCTAATCAACCAGGCCAGCATGGGCCTGGCATGGCCGGACCTCCTAGCAACATGAGTCCACCCAACAATATGCCTCCCCCACCTGTGGACAGGCCTCCAATGCCTCCCAACAACACGAGTGCACCAAACTACAACAATATGCCACAGGCAAGCAACAACTGGGGCGGAGGACAGCCGAACTATCAGATGCCGCCTCCAAACAACTACAATCAGGGTTCGCCTAACAACTATAATCAGATGCCTCCAAACAACAATATGCGACGGCCACCACCACCCCAAAACCACATGGGAGGACCGCCACCGCACATGGGAGGACAGCCACCACACATGGGAGGAGGGCAACCTGTGCCATCATGGTCTGATCCTGCACAATACCAAAATACCTACACACCAGAGAGAGATAATGGTGGTGGTCAAAACCGTTATTGA

Protein Analysis

397

Amino Acids

44.28

Weight (kDa)

9.49

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 102 - 193 1e-37 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 161, 752
AccBSI CCGCTC 3 cut(s) 66, 110, 120
AclWI GGATC 2 cut(s) 599, 1121
AcoI YGGCCR 3 cut(s) 213, 798, 1028
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 4 cut(s) 374, 539, 597, 614
AfiI CCNNNNNNNGG 9 cut(s) 158, 237, 341, 391, 748, 749, 850, 1073, 1094
AgsI TTSAA 2 cut(s) 441, 696
AjnI CCWGG 3 cut(s) 540, 775, 790
AluBI AGCT 2 cut(s) 184, 484
AluI AGCT 2 cut(s) 184, 484
Alw21I GWGCWC 3 cut(s) 312, 469, 889
Alw26I GTCTC 1 cut(s) 272
Alw44I GTGCAC 2 cut(s) 465, 885
AlwI GGATC 2 cut(s) 599, 1121
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 8 cut(s) 213, 266, 739, 778, 788, 798, 857, 1028
ApaLI GTGCAC 2 cut(s) 465, 885
ApeKI GCWGC 2 cut(s) 297, 727
AseI ATTAAT 1 cut(s) 582
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 3 cut(s) 164, 666, 732
AspS9I GGNCC 8 cut(s) 241, 258, 345, 514, 740, 788, 803, 1058
AsuC2I CCSGG 3 cut(s) 176, 177, 239
AsuHPI GGTGA 1 cut(s) 581
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 6 cut(s) 241, 258, 345, 514, 803, 1058
AvrII CCTAGG 1 cut(s) 677
BaeGI GKGCMC 3 cut(s) 469, 757, 889
BanI GGYRCC 2 cut(s) 161, 752
BauI CACGAG 2 cut(s) 470, 880
Bbv12I GWGCWC 3 cut(s) 312, 469, 889
BbvI GCAGC 2 cut(s) 284, 739
BccI CCATC 6 cut(s) 173, 206, 287, 371, 731, 1123
BceAI ACGGC 1 cut(s) 1043
BciT130I CCWGG 3 cut(s) 542, 777, 792
BcnI CCSGG 3 cut(s) 176, 177, 239
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 6 cut(s) 41, 351, 386, 444, 678, 810
BfoI RGCGCY 1 cut(s) 165
BglII AGATCT 1 cut(s) 426
BisI GCNGC 8 cut(s) 81, 142, 195, 298, 332, 335, 728, 956
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 8 cut(s) 82, 143, 196, 299, 333, 336, 729, 957
Bme1390I CCNGG 6 cut(s) 176, 177, 239, 542, 777, 792
Bme18I GGWCC 6 cut(s) 241, 258, 345, 514, 803, 1058
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 8 cut(s) 241, 258, 345, 514, 740, 788, 803, 1058
BmiI GGNNCC 6 cut(s) 163, 242, 243, 330, 346, 754
BmrFI CCNGG 6 cut(s) 176, 177, 239, 542, 777, 792
BmrI ACTGGG 1 cut(s) 934
BmsI GCATC 2 cut(s) 942, 993
BmuI ACTGGG 1 cut(s) 934
BpuMI CCSGG 3 cut(s) 176, 177, 239
BsaBI GATNNNNATC 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 175, 273, 390, 677
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 9 cut(s) 158, 237, 341, 391, 748, 749, 850, 1073, 1094
Bse118I RCCGGY 2 cut(s) 158, 264
Bse1I ACTGG 3 cut(s) 260, 317, 929
Bse3DI GCAATG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 3 cut(s) 542, 777, 792
BseDI CCNNGG 4 cut(s) 175, 273, 390, 677
BseGI GGATG 4 cut(s) 198, 361, 426, 550
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 9 cut(s) 158, 237, 341, 391, 748, 749, 850, 1073, 1094
BseMI GCAATG 1 cut(s) 673
BseNI ACTGG 3 cut(s) 260, 317, 929
BseRI GAGGAG 6 cut(s) 40, 94, 112, 220, 278, 1113
BseSI GKGCMC 3 cut(s) 469, 757, 889
BseXI GCAGC 2 cut(s) 284, 739
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 8 cut(s) 215, 268, 741, 780, 790, 800, 859, 1030
BshNI GGYRCC 2 cut(s) 161, 752
BsiHKAI GWGCWC 3 cut(s) 312, 469, 889
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 6 cut(s) 159, 176, 238, 265, 338, 801
BslFI GGGAC 2 cut(s) 254, 358
BslI CCNNNNNNNGG 9 cut(s) 158, 237, 341, 391, 748, 749, 850, 1073, 1094
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 254, 358
BsnI GGCC 8 cut(s) 215, 268, 741, 780, 790, 800, 859, 1030
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 4 cut(s) 312, 469, 757, 889
Bsp143I GATC 3 cut(s) 426, 604, 1126
Bsp19I CCATGG 1 cut(s) 390
BspANI GGCC 8 cut(s) 215, 268, 741, 780, 790, 800, 859, 1030
BspLI GGNNCC 6 cut(s) 163, 242, 243, 330, 346, 754
BspPI GGATC 2 cut(s) 599, 1121
BspQI GCTCTTC 1 cut(s) 474
BspT107I GGYRCC 2 cut(s) 161, 752
BsrBI CCGCTC 3 cut(s) 66, 110, 120
BsrDI GCAATG 1 cut(s) 673
BsrFI RCCGGY 2 cut(s) 158, 264
BsrI ACTGG 3 cut(s) 260, 317, 929
BssAI RCCGGY 2 cut(s) 158, 264
BssECI CCNNGG 4 cut(s) 175, 273, 390, 677
BssMI GATC 3 cut(s) 426, 604, 1126
BssNI GRCGYC 1 cut(s) 162
BssSI CACGAG 2 cut(s) 470, 880
BssT1I CCWWGG 3 cut(s) 273, 390, 677
Bst2BI CACGAG 2 cut(s) 470, 880
Bst2UI CCWGG 3 cut(s) 542, 777, 792
Bst4CI ACNGT 2 cut(s) 641, 1187
Bst6I CTCTTC 1 cut(s) 474
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 2 cut(s) 464, 1111
BstC8I GCNNGC 4 cut(s) 160, 182, 782, 916
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 4 cut(s) 198, 361, 426, 550
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 3 cut(s) 164, 666, 732
BstKTI GATC 3 cut(s) 429, 607, 1129
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 426, 604, 1126
BstMWI GCNNNNNNNGC 6 cut(s) 89, 147, 464, 738, 865, 1111
BstNI CCWGG 3 cut(s) 542, 777, 792
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 6 cut(s) 174, 175, 237, 540, 775, 790
BstSLI GKGCMC 3 cut(s) 469, 757, 889
BstV1I GCAGC 2 cut(s) 284, 739
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 8 cut(s) 215, 268, 741, 780, 790, 800, 859, 1030
BtgI CCRYGG 1 cut(s) 390
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 4 cut(s) 198, 361, 426, 550
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 4 cut(s) 160, 182, 782, 916
CfoI GCGC 3 cut(s) 164, 666, 732
Cfr10I RCCGGY 2 cut(s) 158, 264
Cfr13I GGNCC 8 cut(s) 241, 258, 345, 514, 740, 788, 803, 1058
Cfr9I CCCGGG 1 cut(s) 175
Csp6I GTAC 4 cut(s) 373, 538, 596, 613
CviQI GTAC 4 cut(s) 373, 538, 596, 613
DinI GGCGCC 1 cut(s) 163
DpnI GATC 3 cut(s) 428, 606, 1128
DpnII GATC 3 cut(s) 426, 604, 1126
EaeI YGGCCR 3 cut(s) 213, 798, 1028
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
EciI GGCGGA 2 cut(s) 137, 945
Eco130I CCWWGG 3 cut(s) 273, 390, 677
Eco147I AGGCCT 1 cut(s) 859
Eco47I GGWCC 6 cut(s) 241, 258, 345, 514, 803, 1058
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 540, 775, 790
EcoT14I CCWWGG 3 cut(s) 273, 390, 677
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 3 cut(s) 273, 390, 677
FaqI GGGAC 2 cut(s) 254, 358
FauI CCCGC 3 cut(s) 71, 125, 199
FauNDI CATATG 1 cut(s) 601
Fnu4HI GCNGC 8 cut(s) 81, 142, 195, 298, 332, 335, 728, 956
FokI GGATG 4 cut(s) 185, 368, 433, 557
Fsp4HI GCNGC 8 cut(s) 81, 142, 195, 298, 332, 335, 728, 956
FspBI CTAG 6 cut(s) 41, 351, 386, 444, 678, 810
GlaI GCGC 3 cut(s) 163, 665, 731
GluI GCNGC 8 cut(s) 81, 142, 195, 298, 332, 335, 728, 956
GsaI CCCAGC 1 cut(s) 523
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 8 cut(s) 215, 268, 741, 780, 790, 800, 859, 1030
HapII CCGG 6 cut(s) 159, 176, 238, 265, 338, 801
HhaI GCGC 3 cut(s) 164, 666, 732
Hin1I GRCGYC 1 cut(s) 162
Hin6I GCGC 3 cut(s) 162, 664, 730
HinP1I GCGC 3 cut(s) 162, 664, 730
HinfI GANTC 2 cut(s) 533, 820
HpaII CCGG 6 cut(s) 159, 176, 238, 265, 338, 801
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 5 cut(s) 467, 572, 824, 853, 887
Hpy188I TCNGA 5 cut(s) 401, 478, 951, 1002, 1126
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 5 cut(s) 467, 572, 824, 853, 887
Hpy99I CGWCG 3 cut(s) 323, 401, 1029
HpyAV CCTTC 4 cut(s) 37, 64, 181, 708
HpyCH4III ACNGT 2 cut(s) 641, 1187
HpyCH4V TGCA 5 cut(s) 458, 467, 727, 887, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 147, 464, 738, 865, 1111
Hsp92I GRCGYC 1 cut(s) 162
HspAI GCGC 3 cut(s) 162, 664, 730
KasI GGCGCC 1 cut(s) 161
KflI GGGWCCC 1 cut(s) 241
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 426, 604, 1126
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 4 cut(s) 29, 125, 240, 328
Lsp1109I GCAGC 2 cut(s) 284, 739
LweI GCATC 2 cut(s) 942, 993
MaeI CTAG 6 cut(s) 41, 351, 386, 444, 678, 810
MalI GATC 3 cut(s) 428, 606, 1128
MbiI CCGCTC 3 cut(s) 66, 110, 120
MboI GATC 3 cut(s) 426, 604, 1126
MboII GAAGA 4 cut(s) 199, 422, 436, 491
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 4 cut(s) 312, 469, 757, 889
MluCI AATT 2 cut(s) 503, 691
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 1 cut(s) 829
MmeI TCCRAC 2 cut(s) 285, 379
MreI CGCCGGCG 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 158
MseI TTAA 2 cut(s) 549, 582
MspA1I CMGCKG 1 cut(s) 519
MspI CCGG 6 cut(s) 159, 176, 238, 265, 338, 801
MspR9I CCNGG 6 cut(s) 176, 177, 239, 542, 777, 792
MvaI CCWGG 3 cut(s) 542, 777, 792
MwoI GCNNNNNNNGC 6 cut(s) 89, 147, 464, 738, 865, 1111
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 162
NciI CCSGG 3 cut(s) 176, 177, 239
NcoI CCATGG 1 cut(s) 390
NdeI CATATG 1 cut(s) 601
NdeII GATC 3 cut(s) 426, 604, 1126
NgoMIV GCCGGC 1 cut(s) 158
NlaIV GGNNCC 6 cut(s) 163, 242, 243, 330, 346, 754
NmeAIII GCCGAG 1 cut(s) 191
NspI RCATGY 1 cut(s) 727
PceI AGGCCT 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 8 cut(s) 82, 143, 196, 299, 333, 336, 729, 957
PleI GAGTC 1 cut(s) 828
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 828
PpuMI RGGWCCY 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 3 cut(s) 540, 775, 790
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 3 cut(s) 540, 775, 790
PspN4I GGNNCC 6 cut(s) 163, 242, 243, 330, 346, 754
PspPI GGNCC 8 cut(s) 241, 258, 345, 514, 740, 788, 803, 1058
PspPPI RGGWCCY 1 cut(s) 241
PsrI GAACNNNNNNTAC 2 cut(s) 545, 577
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 4 cut(s) 374, 539, 597, 614
RsaNI GTAC 4 cut(s) 373, 538, 596, 613
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 549, 582
SatI GCNGC 8 cut(s) 81, 142, 195, 298, 332, 335, 728, 956
Sau3AI GATC 3 cut(s) 426, 604, 1126
Sau96I GGNCC 8 cut(s) 241, 258, 345, 514, 740, 788, 803, 1058
SchI GAGTC 1 cut(s) 829
ScrFI CCNGG 6 cut(s) 176, 177, 239, 542, 777, 792
SduI GDGCHC 4 cut(s) 312, 469, 757, 889
SfaNI GCATC 2 cut(s) 942, 993
SfoI GGCGCC 1 cut(s) 163
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 6 cut(s) 241, 258, 345, 514, 803, 1058
SmaI CCCGGG 1 cut(s) 177
Sse9I AATT 2 cut(s) 503, 691
SseBI AGGCCT 1 cut(s) 859
SspDI GGCGCC 1 cut(s) 161
SspMI CTAG 6 cut(s) 41, 351, 386, 444, 678, 810
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 6 cut(s) 174, 175, 237, 540, 775, 790
StyI CCWWGG 3 cut(s) 273, 390, 677
TaaI ACNGT 2 cut(s) 641, 1187
TaqI TCGA 3 cut(s) 291, 306, 705
TasI AATT 2 cut(s) 503, 691
TatI WGTACW 1 cut(s) 372
TauI GCSGC 6 cut(s) 83, 144, 197, 334, 337, 958
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 2 cut(s) 549, 582
Tru9I TTAA 2 cut(s) 549, 582
TscAI CASTG 1 cut(s) 317
TseI GCWGC 2 cut(s) 297, 727
TspDTI ATGAA 2 cut(s) 437, 477
TspGWI ACGGA 2 cut(s) 191, 579
TspMI CCCGGG 1 cut(s) 175
TspRI CASTG 1 cut(s) 317
VneI GTGCAC 2 cut(s) 465, 885
VpaK11BI GGWCC 6 cut(s) 241, 258, 345, 514, 803, 1058
VspI ATTAAT 1 cut(s) 582
XceI RCATGY 1 cut(s) 727
XcmI CCANNNNNNNNNTGG 2 cut(s) 516, 788
XmaI CCCGGG 1 cut(s) 175
XmaJI CCTAGG 1 cut(s) 677
XspI CTAG 6 cut(s) 41, 351, 386, 444, 678, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.